RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 NISCHQ9Y2I1 1504 aa25.94■■□□□ 1.74
NEDD8-205ENST00000527046 CCDC180Q9P1Z9 1646 aa22.86■■□□□ 1.25
NEDD8-205ENST00000527046 ABCC9O60706 1549 aa22.18■■□□□ 1.14
NEDD8-205ENST00000527046 ZCCHC6Q5VYS8 1495 aaKnown RBP21.65■■□□□ 1.06
NEDD8-205ENST00000527046 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
NEDD8-205ENST00000527046 NACADO15069 1562 aa21.46■■□□□ 1.03
NEDD8-205ENST00000527046 DCAF1Q9Y4B6 1507 aa21.45■■□□□ 1.02
NEDD8-205ENST00000527046 MYO15BQ96JP2 1530 aa21.45■■□□□ 1.02
NEDD8-205ENST00000527046 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
NEDD8-205ENST00000527046 UNC13AQ9UPW8 1703 aa21.01■□□□□ 0.95
NEDD8-205ENST00000527046 SCRIBQ14160 1630 aa20.9■□□□□ 0.94
NEDD8-205ENST00000527046 BICRAQ9NZM4 1560 aa20.88■□□□□ 0.93
NEDD8-205ENST00000527046 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.92
NEDD8-205ENST00000527046 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
NEDD8-205ENST00000527046 DNAJC5BQ9UF47 199 aa20.32■□□□□ 0.84
NEDD8-205ENST00000527046 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
NEDD8-205ENST00000527046 EIF4G1Q04637 1599 aaKnown RBP20.22■□□□□ 0.83
NEDD8-205ENST00000527046 CC2D2AQ9P2K1 1620 aa20.08■□□□□ 0.8
NEDD8-205ENST00000527046 SMARCA4P51532 1647 aa20.04■□□□□ 0.8
NEDD8-205ENST00000527046 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
NEDD8-205ENST00000527046 BAZ1AQ9NRL2 1556 aaPredicted RBP20.02■□□□□ 0.8
NEDD8-205ENST00000527046 ATAD2BQ9ULI0 1458 aa19.91■□□□□ 0.78
NEDD8-205ENST00000527046 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
NEDD8-205ENST00000527046 PEG3Q9GZU2 1588 aa19.87■□□□□ 0.77
NEDD8-205ENST00000527046 NCAPD3P42695 1498 aa19.86■□□□□ 0.77
NEDD8-205ENST00000527046 SMARCA2P51531 1590 aa19.81■□□□□ 0.76
NEDD8-205ENST00000527046 WIZO95785 1651 aa19.81■□□□□ 0.76
NEDD8-205ENST00000527046 HMGXB3Q12766 1538 aa19.72■□□□□ 0.75
NEDD8-205ENST00000527046 BAZ1BQ9UIG0 1483 aaKnown RBP19.67■□□□□ 0.74
NEDD8-205ENST00000527046 TOP2AP11388 1531 aaKnown RBP19.56■□□□□ 0.72
NEDD8-205ENST00000527046 SUPT5HO00267 1087 aaKnown RBP19.52■□□□□ 0.72
NEDD8-205ENST00000527046 CCDC88BA6NC98 1476 aa19.39■□□□□ 0.69
NEDD8-205ENST00000527046 NESP48681 1621 aa19.33■□□□□ 0.68
NEDD8-205ENST00000527046 CADPSQ9ULU8 1353 aa19.27■□□□□ 0.68
NEDD8-205ENST00000527046 CFTRP13569 1480 aa19.22■□□□□ 0.67
NEDD8-205ENST00000527046 LAMC3Q9Y6N6 1575 aa19.22■□□□□ 0.67
NEDD8-205ENST00000527046 PDS5BQ9NTI5 1447 aa19.06■□□□□ 0.64
NEDD8-205ENST00000527046 KIF21AQ7Z4S6 1674 aa19.05■□□□□ 0.64
NEDD8-205ENST00000527046 FANCD2Q9BXW9 1451 aa19.03■□□□□ 0.64
NEDD8-205ENST00000527046 PRDM2Q13029 1718 aa19.02■□□□□ 0.63
NEDD8-205ENST00000527046 ERCC6Q03468 1493 aa18.98■□□□□ 0.63
NEDD8-205ENST00000527046 CEP164Q9UPV0 1460 aa18.93■□□□□ 0.62
NEDD8-205ENST00000527046 THOC2Q8NI27 1593 aaKnown RBP18.93■□□□□ 0.62
NEDD8-205ENST00000527046 URB2Q14146 1524 aaKnown RBP18.88■□□□□ 0.61
NEDD8-205ENST00000527046 MRC2Q9UBG0 1479 aa18.87■□□□□ 0.61
NEDD8-205ENST00000527046 WDR62O43379 1518 aa18.83■□□□□ 0.6
NEDD8-205ENST00000527046 TOPBP1Q92547 1522 aa18.77■□□□□ 0.6
NEDD8-205ENST00000527046 CUX1P39880 1505 aa18.75■□□□□ 0.59
NEDD8-205ENST00000527046 CUX2O14529 1486 aa18.75■□□□□ 0.59
NEDD8-205ENST00000527046 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
NEDD8-205ENST00000527046 DNMBPQ6XZF7 1577 aa18.73■□□□□ 0.59
NEDD8-205ENST00000527046 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
NEDD8-205ENST00000527046 SYNJ1O43426 1573 aa18.66■□□□□ 0.58
NEDD8-205ENST00000527046 POLA1P09884 1462 aaPredicted RBP18.63■□□□□ 0.57
NEDD8-205ENST00000527046 BIVM-ERCC5R4GMW8 1640 aa18.62■□□□□ 0.57
NEDD8-205ENST00000527046 TOP2BQ02880 1626 aa18.61■□□□□ 0.57
NEDD8-205ENST00000527046 FGD5Q6ZNL6 1462 aa18.61■□□□□ 0.57
NEDD8-205ENST00000527046 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.57
NEDD8-205ENST00000527046 TARBP1Q13395 1621 aaKnown RBP18.57■□□□□ 0.56
NEDD8-205ENST00000527046 SOGA1O94964 1423 aa18.55■□□□□ 0.56
NEDD8-205ENST00000527046 IFT140Q96RY7 1462 aa18.54■□□□□ 0.56
NEDD8-205ENST00000527046 ZNF608Q9ULD9 1512 aaPredicted RBP18.53■□□□□ 0.56
NEDD8-205ENST00000527046 WDR97A6NE52 1622 aa18.45■□□□□ 0.54
NEDD8-205ENST00000527046 ABCA10Q8WWZ4 1543 aa18.45■□□□□ 0.54
NEDD8-205ENST00000527046 CHIC1Q5VXU3 224 aa18.45■□□□□ 0.54
NEDD8-205ENST00000527046 AQRO60306 1485 aaKnown RBP eCLIP18.45■□□□□ 0.548e-8■■□□□ 11.9
NEDD8-205ENST00000527046 TDRD9Q8NDG6 1382 aaKnown RBP18.44■□□□□ 0.54
NEDD8-205ENST00000527046 TRIM41Q8WV44 630 aa18.39■□□□□ 0.53
NEDD8-205ENST00000527046 EIF4G3O43432 1585 aaKnown RBP18.38■□□□□ 0.53
NEDD8-205ENST00000527046 ABCA5Q8WWZ7 1642 aa18.34■□□□□ 0.53
NEDD8-205ENST00000527046 GAPVD1Q14C86 1478 aa18.32■□□□□ 0.52
NEDD8-205ENST00000527046 RUSC2Q8N2Y8 1516 aa18.31■□□□□ 0.52
NEDD8-205ENST00000527046 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
NEDD8-205ENST00000527046 IGF1RP08069 1367 aa18.25■□□□□ 0.51
NEDD8-205ENST00000527046 PBRM1Q86U86 1689 aa18.24■□□□□ 0.51
NEDD8-205ENST00000527046 KIF27Q86VH2 1401 aa18.23■□□□□ 0.51
NEDD8-205ENST00000527046 SNAPC4Q5SXM2 1469 aa18.21■□□□□ 0.51
NEDD8-205ENST00000527046 ERICH3Q5RHP9 1530 aa18.2■□□□□ 0.5
NEDD8-205ENST00000527046 MAGI1Q96QZ7 1491 aaPredicted RBP18.18■□□□□ 0.5
NEDD8-205ENST00000527046 ADAMTS12P58397 1594 aa18.13■□□□□ 0.49
NEDD8-205ENST00000527046 FHAD1B1AJZ9 1412 aa18.12■□□□□ 0.49
NEDD8-205ENST00000527046 SYNJ2O15056 1496 aa18.12■□□□□ 0.49
NEDD8-205ENST00000527046 CHD1O14646 1710 aa18.12■□□□□ 0.49
NEDD8-205ENST00000527046 CARMIL1Q5VZK9 1371 aa18.08■□□□□ 0.49
NEDD8-205ENST00000527046 FBLN2P98095 1184 aa18.07■□□□□ 0.48
NEDD8-205ENST00000527046 CHMP7Q8WUX9 453 aaPredicted RBP18.07■□□□□ 0.48
NEDD8-205ENST00000527046 CSRNP3Q8WYN3 585 aa18.07■□□□□ 0.48
NEDD8-205ENST00000527046 OSCARQ8IYS5 282 aa18.06■□□□□ 0.48
NEDD8-205ENST00000527046 GRIN2AQ12879 1464 aa18.06■□□□□ 0.48
NEDD8-205ENST00000527046 PRXQ9BXM0 1461 aa18.04■□□□□ 0.48
NEDD8-205ENST00000527046 CUL7Q14999 1698 aa18.03■□□□□ 0.48
NEDD8-205ENST00000527046 FAM9AQ8IZU1 332 aaPredicted RBP18.03■□□□□ 0.48
NEDD8-205ENST00000527046 EEA1Q15075 1411 aa18.03■□□□□ 0.48
NEDD8-205ENST00000527046 NUP160Q12769 1436 aa18■□□□□ 0.47
NEDD8-205ENST00000527046 DNAJC5Q9H3Z4 198 aa17.99■□□□□ 0.47
NEDD8-205ENST00000527046 CEP170Q5SW79 1584 aa17.99■□□□□ 0.47
NEDD8-205ENST00000527046 RAPGEF2Q9Y4G8 1499 aa17.97■□□□□ 0.47
NEDD8-205ENST00000527046 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
NEDD8-205ENST00000527046 KIF21BO75037 1637 aa17.87■□□□□ 0.45
NEDD8-205ENST00000527046 KIAA0586Q9BVV6 1533 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms