RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 NISCHQ9Y2I1 1504 aa25.93■■□□□ 1.74
NEDD8-202ENST00000396828 ABCC9O60706 1549 aa23.33■■□□□ 1.32
NEDD8-202ENST00000396828 CCDC180Q9P1Z9 1646 aa23.21■■□□□ 1.31
NEDD8-202ENST00000396828 RB1CC1Q8TDY2 1594 aa22.11■■□□□ 1.13
NEDD8-202ENST00000396828 DNAJC5BQ9UF47 199 aa21.99■■□□□ 1.11
NEDD8-202ENST00000396828 NACADO15069 1562 aa21.95■■□□□ 1.11
NEDD8-202ENST00000396828 DCAF8L2P0C7V8 631 aa21.93■■□□□ 1.1
NEDD8-202ENST00000396828 PABPN1Q86U42 306 aaKnown RBP eCLIP21.76■■□□□ 1.07
NEDD8-202ENST00000396828 UNC13AQ9UPW8 1703 aa21.71■■□□□ 1.07
NEDD8-202ENST00000396828 MYO15BQ96JP2 1530 aa21.62■■□□□ 1.05
NEDD8-202ENST00000396828 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
NEDD8-202ENST00000396828 ZCCHC6Q5VYS8 1495 aaKnown RBP21.48■■□□□ 1.03
NEDD8-202ENST00000396828 DCAF1Q9Y4B6 1507 aa21.36■■□□□ 1.01
NEDD8-202ENST00000396828 SCRIBQ14160 1630 aa21.22■□□□□ 0.99
NEDD8-202ENST00000396828 SHROOM4Q9ULL8 1493 aa21.1■□□□□ 0.97
NEDD8-202ENST00000396828 CC2D2AQ9P2K1 1620 aa21.05■□□□□ 0.96
NEDD8-202ENST00000396828 EIF4G1Q04637 1599 aaKnown RBP20.99■□□□□ 0.95
NEDD8-202ENST00000396828 CECR2Q9BXF3 1484 aa20.98■□□□□ 0.95
NEDD8-202ENST00000396828 NCAPD3P42695 1498 aa20.3■□□□□ 0.84
NEDD8-202ENST00000396828 ATAD2BQ9ULI0 1458 aa20.26■□□□□ 0.83
NEDD8-202ENST00000396828 SMARCA4P51532 1647 aa20.23■□□□□ 0.83
NEDD8-202ENST00000396828 SMARCA2P51531 1590 aa20.13■□□□□ 0.81
NEDD8-202ENST00000396828 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
NEDD8-202ENST00000396828 DNAJC5Q9H3Z4 198 aa20.09■□□□□ 0.81
NEDD8-202ENST00000396828 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.81
NEDD8-202ENST00000396828 ERCC6Q03468 1493 aa20.07■□□□□ 0.8
NEDD8-202ENST00000396828 NESP48681 1621 aa20.06■□□□□ 0.8
NEDD8-202ENST00000396828 BAZ1BQ9UIG0 1483 aaKnown RBP20.03■□□□□ 0.8
NEDD8-202ENST00000396828 MROH2BQ7Z745 1585 aa20.02■□□□□ 0.8
NEDD8-202ENST00000396828 PEG3Q9GZU2 1588 aa20.01■□□□□ 0.79
NEDD8-202ENST00000396828 CUX2O14529 1486 aa20.01■□□□□ 0.79
NEDD8-202ENST00000396828 LAMC3Q9Y6N6 1575 aa19.82■□□□□ 0.76
NEDD8-202ENST00000396828 THOC2Q8NI27 1593 aaKnown RBP19.81■□□□□ 0.76
NEDD8-202ENST00000396828 WIZO95785 1651 aa19.79■□□□□ 0.76
NEDD8-202ENST00000396828 KIF21AQ7Z4S6 1674 aa19.78■□□□□ 0.76
NEDD8-202ENST00000396828 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
NEDD8-202ENST00000396828 CADPSQ9ULU8 1353 aa19.69■□□□□ 0.74
NEDD8-202ENST00000396828 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
NEDD8-202ENST00000396828 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
NEDD8-202ENST00000396828 WDR62O43379 1518 aa19.51■□□□□ 0.71
NEDD8-202ENST00000396828 CFTRP13569 1480 aa19.47■□□□□ 0.71
NEDD8-202ENST00000396828 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
NEDD8-202ENST00000396828 TOP2AP11388 1531 aaKnown RBP19.46■□□□□ 0.71
NEDD8-202ENST00000396828 CEP164Q9UPV0 1460 aa19.46■□□□□ 0.71
NEDD8-202ENST00000396828 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
NEDD8-202ENST00000396828 CCDC88BA6NC98 1476 aa19.3■□□□□ 0.68
NEDD8-202ENST00000396828 TRIM41Q8WV44 630 aa19.24■□□□□ 0.67
NEDD8-202ENST00000396828 PRDM2Q13029 1718 aa19.23■□□□□ 0.67
NEDD8-202ENST00000396828 OSCARQ8IYS5 282 aa19.13■□□□□ 0.65
NEDD8-202ENST00000396828 ZNF608Q9ULD9 1512 aaPredicted RBP19.13■□□□□ 0.65
NEDD8-202ENST00000396828 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
NEDD8-202ENST00000396828 TOPBP1Q92547 1522 aa19.1■□□□□ 0.65
NEDD8-202ENST00000396828 IFT140Q96RY7 1462 aa19.06■□□□□ 0.64
NEDD8-202ENST00000396828 DNMBPQ6XZF7 1577 aa19.01■□□□□ 0.63
NEDD8-202ENST00000396828 EIF4G3O43432 1585 aaKnown RBP18.98■□□□□ 0.63
NEDD8-202ENST00000396828 ABCC8Q09428 1581 aa18.98■□□□□ 0.63
NEDD8-202ENST00000396828 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
NEDD8-202ENST00000396828 AQRO60306 1485 aaKnown RBP eCLIP18.95■□□□□ 0.628e-8■■□□□ 11.9
NEDD8-202ENST00000396828 RIMBP3CA6NJZ7 1639 aa18.92■□□□□ 0.62
NEDD8-202ENST00000396828 RIMBP3BA6NNM3 1639 aa18.92■□□□□ 0.62
NEDD8-202ENST00000396828 RIMBP3Q9UFD9 1639 aa18.92■□□□□ 0.62
NEDD8-202ENST00000396828 POLA1P09884 1462 aaPredicted RBP18.91■□□□□ 0.62
NEDD8-202ENST00000396828 CHIC1Q5VXU3 224 aa18.9■□□□□ 0.62
NEDD8-202ENST00000396828 RAD54L2Q9Y4B4 1467 aa18.9■□□□□ 0.62
NEDD8-202ENST00000396828 ARHGEF11O15085 1522 aa18.85■□□□□ 0.61
NEDD8-202ENST00000396828 CHD1O14646 1710 aa18.85■□□□□ 0.61
NEDD8-202ENST00000396828 TDRD9Q8NDG6 1382 aaKnown RBP18.82■□□□□ 0.6
NEDD8-202ENST00000396828 SOGA1O94964 1423 aa18.82■□□□□ 0.6
NEDD8-202ENST00000396828 CUX1P39880 1505 aa18.8■□□□□ 0.6
NEDD8-202ENST00000396828 FGD5Q6ZNL6 1462 aa18.8■□□□□ 0.6
NEDD8-202ENST00000396828 FBLN2P98095 1184 aa18.8■□□□□ 0.6
NEDD8-202ENST00000396828 CYB5RLQ6IPT4 315 aa18.74■□□□□ 0.59
NEDD8-202ENST00000396828 SUPT5HO00267 1087 aaKnown RBP18.73■□□□□ 0.59
NEDD8-202ENST00000396828 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
NEDD8-202ENST00000396828 ARAP1Q96P48 1450 aa18.68■□□□□ 0.58
NEDD8-202ENST00000396828 WDR97A6NE52 1622 aa18.66■□□□□ 0.58
NEDD8-202ENST00000396828 GRIN2BQ13224 1484 aa18.63■□□□□ 0.57
NEDD8-202ENST00000396828 CLASP1Q7Z460 1538 aa18.63■□□□□ 0.57
NEDD8-202ENST00000396828 CHMP7Q8WUX9 453 aaPredicted RBP18.62■□□□□ 0.57
NEDD8-202ENST00000396828 MAGI1Q96QZ7 1491 aaPredicted RBP18.61■□□□□ 0.57
NEDD8-202ENST00000396828 GAPVD1Q14C86 1478 aa18.58■□□□□ 0.57
NEDD8-202ENST00000396828 PBRM1Q86U86 1689 aa18.58■□□□□ 0.57
NEDD8-202ENST00000396828 SYNJ2O15056 1496 aa18.58■□□□□ 0.56
NEDD8-202ENST00000396828 SYNJ1O43426 1573 aa18.55■□□□□ 0.56
NEDD8-202ENST00000396828 ABCA10Q8WWZ4 1543 aa18.55■□□□□ 0.56
NEDD8-202ENST00000396828 ABCA5Q8WWZ7 1642 aa18.54■□□□□ 0.56
NEDD8-202ENST00000396828 TRHP20396 242 aaPredicted RBP18.5■□□□□ 0.55
NEDD8-202ENST00000396828 WRNQ14191 1432 aaPredicted RBP eCLIP18.46■□□□□ 0.55
NEDD8-202ENST00000396828 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
NEDD8-202ENST00000396828 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
NEDD8-202ENST00000396828 GRIN2AQ12879 1464 aa18.41■□□□□ 0.54
NEDD8-202ENST00000396828 ERCC6L2Q5T890 1561 aa18.41■□□□□ 0.54
NEDD8-202ENST00000396828 ADAMTS12P58397 1594 aa18.4■□□□□ 0.54
NEDD8-202ENST00000396828 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
NEDD8-202ENST00000396828 NUP160Q12769 1436 aa18.35■□□□□ 0.53
NEDD8-202ENST00000396828 FHAD1B1AJZ9 1412 aa18.32■□□□□ 0.52
NEDD8-202ENST00000396828 ERICH3Q5RHP9 1530 aa18.3■□□□□ 0.52
NEDD8-202ENST00000396828 SHROOM2Q13796 1616 aa18.27■□□□□ 0.52
NEDD8-202ENST00000396828 PRG4Q92954 1404 aaPredicted RBP18.19■□□□□ 0.5
NEDD8-202ENST00000396828 JPH4Q96JJ6 628 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms