RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 NISCHQ9Y2I1 1504 aa27.85■■■□□ 2.05
NEDD8-204ENST00000526430 ABCC9O60706 1549 aa25.93■■□□□ 1.74
NEDD8-204ENST00000526430 CCDC180Q9P1Z9 1646 aa25.48■■□□□ 1.67
NEDD8-204ENST00000526430 DNAJC5BQ9UF47 199 aa24.92■■□□□ 1.58
NEDD8-204ENST00000526430 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
NEDD8-204ENST00000526430 NACADO15069 1562 aa24.17■■□□□ 1.46
NEDD8-204ENST00000526430 UNC13AQ9UPW8 1703 aa24.09■■□□□ 1.45
NEDD8-204ENST00000526430 PABPN1Q86U42 306 aaKnown RBP eCLIP23.92■■□□□ 1.42
NEDD8-204ENST00000526430 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
NEDD8-204ENST00000526430 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
NEDD8-204ENST00000526430 DCAF8L2P0C7V8 631 aa23.55■■□□□ 1.36
NEDD8-204ENST00000526430 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
NEDD8-204ENST00000526430 CC2D2AQ9P2K1 1620 aa23.51■■□□□ 1.35
NEDD8-204ENST00000526430 DNAJC5Q9H3Z4 198 aa23.49■■□□□ 1.35
NEDD8-204ENST00000526430 CECR2Q9BXF3 1484 aa23.48■■□□□ 1.35
NEDD8-204ENST00000526430 EIF4G1Q04637 1599 aaKnown RBP23.28■■□□□ 1.32
NEDD8-204ENST00000526430 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
NEDD8-204ENST00000526430 SCRIBQ14160 1630 aa23■■□□□ 1.27
NEDD8-204ENST00000526430 ZCCHC6Q5VYS8 1495 aaKnown RBP22.95■■□□□ 1.26
NEDD8-204ENST00000526430 CUX2O14529 1486 aa22.78■■□□□ 1.24
NEDD8-204ENST00000526430 ERCC6Q03468 1493 aa22.47■■□□□ 1.19
NEDD8-204ENST00000526430 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
NEDD8-204ENST00000526430 THOC2Q8NI27 1593 aaKnown RBP22.15■■□□□ 1.14
NEDD8-204ENST00000526430 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
NEDD8-204ENST00000526430 NESP48681 1621 aa22.09■■□□□ 1.13
NEDD8-204ENST00000526430 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
NEDD8-204ENST00000526430 SMARCA2P51531 1590 aa22.04■■□□□ 1.12
NEDD8-204ENST00000526430 TRIM41Q8WV44 630 aa22.03■■□□□ 1.12
NEDD8-204ENST00000526430 LAMC3Q9Y6N6 1575 aa21.95■■□□□ 1.11
NEDD8-204ENST00000526430 SMARCA4P51532 1647 aa21.93■■□□□ 1.1
NEDD8-204ENST00000526430 KIF21AQ7Z4S6 1674 aa21.93■■□□□ 1.1
NEDD8-204ENST00000526430 BAZ1BQ9UIG0 1483 aaKnown RBP21.82■■□□□ 1.08
NEDD8-204ENST00000526430 PEG3Q9GZU2 1588 aa21.78■■□□□ 1.08
NEDD8-204ENST00000526430 PDS5BQ9NTI5 1447 aa21.75■■□□□ 1.07
NEDD8-204ENST00000526430 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
NEDD8-204ENST00000526430 WDR62O43379 1518 aa21.65■■□□□ 1.06
NEDD8-204ENST00000526430 MRC2Q9UBG0 1479 aa21.63■■□□□ 1.05
NEDD8-204ENST00000526430 CADPSQ9ULU8 1353 aa21.49■■□□□ 1.03
NEDD8-204ENST00000526430 OSCARQ8IYS5 282 aa21.48■■□□□ 1.03
NEDD8-204ENST00000526430 RIMBP3CA6NJZ7 1639 aa21.42■■□□□ 1.02
NEDD8-204ENST00000526430 RIMBP3BA6NNM3 1639 aa21.42■■□□□ 1.02
NEDD8-204ENST00000526430 RIMBP3Q9UFD9 1639 aa21.42■■□□□ 1.02
NEDD8-204ENST00000526430 MROH2BQ7Z745 1585 aa21.41■■□□□ 1.02
NEDD8-204ENST00000526430 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.02
NEDD8-204ENST00000526430 FANCD2Q9BXW9 1451 aa21.27■■□□□ 1
NEDD8-204ENST00000526430 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
NEDD8-204ENST00000526430 WIZO95785 1651 aa21.17■□□□□ 0.98
NEDD8-204ENST00000526430 URB2Q14146 1524 aaKnown RBP21.16■□□□□ 0.98
NEDD8-204ENST00000526430 CFTRP13569 1480 aa21.15■□□□□ 0.98
NEDD8-204ENST00000526430 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
NEDD8-204ENST00000526430 IFT140Q96RY7 1462 aa21■□□□□ 0.95
NEDD8-204ENST00000526430 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
NEDD8-204ENST00000526430 CYB5RLQ6IPT4 315 aa20.97■□□□□ 0.95
NEDD8-204ENST00000526430 CHD1O14646 1710 aa20.97■□□□□ 0.95
NEDD8-204ENST00000526430 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
NEDD8-204ENST00000526430 TRHP20396 242 aaPredicted RBP20.95■□□□□ 0.94
NEDD8-204ENST00000526430 EIF4G3O43432 1585 aaKnown RBP20.93■□□□□ 0.94
NEDD8-204ENST00000526430 AEBP2Q6ZN18 517 aaPredicted RBP20.9■□□□□ 0.94
NEDD8-204ENST00000526430 RSF1Q96T23 1441 aaPredicted RBP20.88■□□□□ 0.93
NEDD8-204ENST00000526430 TOP2AP11388 1531 aaKnown RBP20.86■□□□□ 0.93
NEDD8-204ENST00000526430 TOPBP1Q92547 1522 aa20.81■□□□□ 0.92
NEDD8-204ENST00000526430 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
NEDD8-204ENST00000526430 TARBP1Q13395 1621 aaKnown RBP20.75■□□□□ 0.91
NEDD8-204ENST00000526430 DNMBPQ6XZF7 1577 aa20.72■□□□□ 0.91
NEDD8-204ENST00000526430 CLASP1Q7Z460 1538 aa20.67■□□□□ 0.9
NEDD8-204ENST00000526430 AQRO60306 1485 aaKnown RBP eCLIP20.66■□□□□ 0.98e-8■■□□□ 11.9
NEDD8-204ENST00000526430 WDR97A6NE52 1622 aa20.57■□□□□ 0.88
NEDD8-204ENST00000526430 SYNJ1O43426 1573 aa20.57■□□□□ 0.88
NEDD8-204ENST00000526430 FBLN2P98095 1184 aa20.57■□□□□ 0.88
NEDD8-204ENST00000526430 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
NEDD8-204ENST00000526430 POLA1P09884 1462 aaPredicted RBP20.55■□□□□ 0.88
NEDD8-204ENST00000526430 SNAPC4Q5SXM2 1469 aa20.48■□□□□ 0.87
NEDD8-204ENST00000526430 MAGI1Q96QZ7 1491 aaPredicted RBP20.46■□□□□ 0.87
NEDD8-204ENST00000526430 GAPVD1Q14C86 1478 aa20.42■□□□□ 0.86
NEDD8-204ENST00000526430 RAD54L2Q9Y4B4 1467 aa20.41■□□□□ 0.86
NEDD8-204ENST00000526430 TDRD9Q8NDG6 1382 aaKnown RBP20.4■□□□□ 0.86
NEDD8-204ENST00000526430 SYNJ2O15056 1496 aa20.38■□□□□ 0.85
NEDD8-204ENST00000526430 SOGA1O94964 1423 aa20.37■□□□□ 0.85
NEDD8-204ENST00000526430 CHMP7Q8WUX9 453 aaPredicted RBP20.36■□□□□ 0.85
NEDD8-204ENST00000526430 KIF13AQ9H1H9 1805 aa20.34■□□□□ 0.85
NEDD8-204ENST00000526430 GRIN2BQ13224 1484 aa20.34■□□□□ 0.85
NEDD8-204ENST00000526430 PBRM1Q86U86 1689 aa20.34■□□□□ 0.85
NEDD8-204ENST00000526430 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
NEDD8-204ENST00000526430 ERCC6L2Q5T890 1561 aa20.21■□□□□ 0.83
NEDD8-204ENST00000526430 CUX1P39880 1505 aa20.18■□□□□ 0.82
NEDD8-204ENST00000526430 ABCA5Q8WWZ7 1642 aa20.16■□□□□ 0.82
NEDD8-204ENST00000526430 CEP170Q5SW79 1584 aa20.16■□□□□ 0.82
NEDD8-204ENST00000526430 SHROOM2Q13796 1616 aa20.16■□□□□ 0.82
NEDD8-204ENST00000526430 ILDR1Q86SU0 546 aaPredicted RBP20.11■□□□□ 0.81
NEDD8-204ENST00000526430 GRIN2AQ12879 1464 aa20.09■□□□□ 0.81
NEDD8-204ENST00000526430 NUP160Q12769 1436 aa20.07■□□□□ 0.8
NEDD8-204ENST00000526430 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
NEDD8-204ENST00000526430 ADAMTS12P58397 1594 aa20.04■□□□□ 0.8
NEDD8-204ENST00000526430 ABCC10Q5T3U5 1492 aa19.99■□□□□ 0.79
NEDD8-204ENST00000526430 KDM6BO15054 1643 aa19.98■□□□□ 0.79
NEDD8-204ENST00000526430 KDM4FA0A1W2PPD8 638 aa19.98■□□□□ 0.79
NEDD8-204ENST00000526430 DIP2BQ9P265 1576 aa19.98■□□□□ 0.79
NEDD8-204ENST00000526430 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
NEDD8-204ENST00000526430 TSPOAP1O95153 1857 aa19.9■□□□□ 0.78
NEDD8-204ENST00000526430 FAM69CQ0P6D2 419 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms