RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 NISCHQ9Y2I1 1504 aa25.46■■□□□ 1.67
ATL3-204ENST00000540699 CCDC180Q9P1Z9 1646 aa22.63■■□□□ 1.21
ATL3-204ENST00000540699 ABCC9O60706 1549 aa22.4■■□□□ 1.18
ATL3-204ENST00000540699 RB1CC1Q8TDY2 1594 aa21.36■■□□□ 1.01
ATL3-204ENST00000540699 ZCCHC6Q5VYS8 1495 aaKnown RBP21.26■□□□□ 0.99
ATL3-204ENST00000540699 NACADO15069 1562 aa21.2■□□□□ 0.98
ATL3-204ENST00000540699 DNAJC5BQ9UF47 199 aa21.18■□□□□ 0.98
ATL3-204ENST00000540699 MYO15BQ96JP2 1530 aa21.17■□□□□ 0.98
ATL3-204ENST00000540699 DCAF1Q9Y4B6 1507 aa21.13■□□□□ 0.97
ATL3-204ENST00000540699 DCAF8L2P0C7V8 631 aa20.99■□□□□ 0.95
ATL3-204ENST00000540699 UNC13AQ9UPW8 1703 aa20.97■□□□□ 0.95
ATL3-204ENST00000540699 PABPN1Q86U42 306 aaKnown RBP eCLIP20.8■□□□□ 0.92
ATL3-204ENST00000540699 BICRAQ9NZM4 1560 aa20.76■□□□□ 0.91
ATL3-204ENST00000540699 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
ATL3-204ENST00000540699 SHROOM4Q9ULL8 1493 aa20.48■□□□□ 0.87
ATL3-204ENST00000540699 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
ATL3-204ENST00000540699 EIF4G1Q04637 1599 aaKnown RBP20.23■□□□□ 0.83
ATL3-204ENST00000540699 CECR2Q9BXF3 1484 aa20.18■□□□□ 0.82
ATL3-204ENST00000540699 DNAJC5Q9H3Z4 198 aa19.91■□□□□ 0.78
ATL3-204ENST00000540699 SMARCA4P51532 1647 aa19.73■□□□□ 0.75
ATL3-204ENST00000540699 BAZ1AQ9NRL2 1556 aaPredicted RBP19.72■□□□□ 0.75
ATL3-204ENST00000540699 MROH2BQ7Z745 1585 aa19.6■□□□□ 0.73
ATL3-204ENST00000540699 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.73
ATL3-204ENST00000540699 SMARCA2P51531 1590 aa19.56■□□□□ 0.72
ATL3-204ENST00000540699 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
ATL3-204ENST00000540699 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
ATL3-204ENST00000540699 HMGXB3Q12766 1538 aa19.47■□□□□ 0.71
ATL3-204ENST00000540699 RSF1Q96T23 1441 aaPredicted RBP19.43■□□□□ 0.7
ATL3-204ENST00000540699 WIZO95785 1651 aa19.41■□□□□ 0.7
ATL3-204ENST00000540699 BAZ1BQ9UIG0 1483 aaKnown RBP19.37■□□□□ 0.69
ATL3-204ENST00000540699 CUX2O14529 1486 aa19.35■□□□□ 0.69
ATL3-204ENST00000540699 ERCC6Q03468 1493 aa19.34■□□□□ 0.69
ATL3-204ENST00000540699 NESP48681 1621 aa19.25■□□□□ 0.67
ATL3-204ENST00000540699 TOP2AP11388 1531 aaKnown RBP19.23■□□□□ 0.67
ATL3-204ENST00000540699 LAMC3Q9Y6N6 1575 aa19.15■□□□□ 0.66
ATL3-204ENST00000540699 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
ATL3-204ENST00000540699 KIF21AQ7Z4S6 1674 aa19.08■□□□□ 0.64
ATL3-204ENST00000540699 PDS5BQ9NTI5 1447 aa18.98■□□□□ 0.63
ATL3-204ENST00000540699 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
ATL3-204ENST00000540699 SUPT5HO00267 1087 aaKnown RBP18.93■□□□□ 0.62
ATL3-204ENST00000540699 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
ATL3-204ENST00000540699 CFTRP13569 1480 aa18.89■□□□□ 0.61
ATL3-204ENST00000540699 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
ATL3-204ENST00000540699 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
ATL3-204ENST00000540699 WDR62O43379 1518 aa18.83■□□□□ 0.6
ATL3-204ENST00000540699 CEP164Q9UPV0 1460 aa18.77■□□□□ 0.59
ATL3-204ENST00000540699 FANCD2Q9BXW9 1451 aa18.74■□□□□ 0.59
ATL3-204ENST00000540699 TRIM41Q8WV44 630 aa18.68■□□□□ 0.58
ATL3-204ENST00000540699 URB2Q14146 1524 aaKnown RBP18.6■□□□□ 0.57
ATL3-204ENST00000540699 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
ATL3-204ENST00000540699 DNMBPQ6XZF7 1577 aa18.47■□□□□ 0.55
ATL3-204ENST00000540699 TOPBP1Q92547 1522 aa18.45■□□□□ 0.54
ATL3-204ENST00000540699 OSCARQ8IYS5 282 aa18.44■□□□□ 0.54
ATL3-204ENST00000540699 IFT140Q96RY7 1462 aa18.39■□□□□ 0.53
ATL3-204ENST00000540699 CUX1P39880 1505 aa18.39■□□□□ 0.53
ATL3-204ENST00000540699 ZNF608Q9ULD9 1512 aaPredicted RBP18.37■□□□□ 0.53
ATL3-204ENST00000540699 BIVM-ERCC5R4GMW8 1640 aa18.32■□□□□ 0.52
ATL3-204ENST00000540699 EIF4G3O43432 1585 aaKnown RBP18.31■□□□□ 0.52
ATL3-204ENST00000540699 POLA1P09884 1462 aaPredicted RBP18.31■□□□□ 0.52
ATL3-204ENST00000540699 TOP2BQ02880 1626 aa18.31■□□□□ 0.52
ATL3-204ENST00000540699 WRNQ14191 1432 aaPredicted RBP eCLIP18.3■□□□□ 0.52
ATL3-204ENST00000540699 TARBP1Q13395 1621 aaKnown RBP18.29■□□□□ 0.52
ATL3-204ENST00000540699 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
ATL3-204ENST00000540699 FGD5Q6ZNL6 1462 aa18.27■□□□□ 0.52
ATL3-204ENST00000540699 RIMBP3CA6NJZ7 1639 aa18.25■□□□□ 0.51
ATL3-204ENST00000540699 RIMBP3BA6NNM3 1639 aa18.25■□□□□ 0.51
ATL3-204ENST00000540699 RIMBP3Q9UFD9 1639 aa18.25■□□□□ 0.51
ATL3-204ENST00000540699 WDR97A6NE52 1622 aa18.21■□□□□ 0.51
ATL3-204ENST00000540699 CHD1O14646 1710 aa18.2■□□□□ 0.5
ATL3-204ENST00000540699 SOGA1O94964 1423 aa18.2■□□□□ 0.5
ATL3-204ENST00000540699 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
ATL3-204ENST00000540699 AQRO60306 1485 aaKnown RBP eCLIP18.17■□□□□ 0.5
ATL3-204ENST00000540699 ARHGEF11O15085 1522 aa18.16■□□□□ 0.5
ATL3-204ENST00000540699 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
ATL3-204ENST00000540699 ABCA5Q8WWZ7 1642 aa18.09■□□□□ 0.49
ATL3-204ENST00000540699 TDRD9Q8NDG6 1382 aaKnown RBP18.04■□□□□ 0.48
ATL3-204ENST00000540699 PBRM1Q86U86 1689 aa18.03■□□□□ 0.48
ATL3-204ENST00000540699 GAPVD1Q14C86 1478 aa18.01■□□□□ 0.47
ATL3-204ENST00000540699 SNAPC4Q5SXM2 1469 aa18.01■□□□□ 0.47
ATL3-204ENST00000540699 FBLN2P98095 1184 aa18■□□□□ 0.47
ATL3-204ENST00000540699 CYB5RLQ6IPT4 315 aa18■□□□□ 0.47
ATL3-204ENST00000540699 GRIN2BQ13224 1484 aa18■□□□□ 0.47
ATL3-204ENST00000540699 ARAP1Q96P48 1450 aa17.98■□□□□ 0.47
ATL3-204ENST00000540699 MAGI1Q96QZ7 1491 aaPredicted RBP17.97■□□□□ 0.47
ATL3-204ENST00000540699 CLASP1Q7Z460 1538 aa17.97■□□□□ 0.47
ATL3-204ENST00000540699 ERICH3Q5RHP9 1530 aa17.93■□□□□ 0.46
ATL3-204ENST00000540699 CHIC1Q5VXU3 224 aa17.93■□□□□ 0.46
ATL3-204ENST00000540699 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
ATL3-204ENST00000540699 KIF27Q86VH2 1401 aa17.9■□□□□ 0.46
ATL3-204ENST00000540699 SYNJ2O15056 1496 aa17.9■□□□□ 0.46
ATL3-204ENST00000540699 ADAMTS12P58397 1594 aa17.88■□□□□ 0.45
ATL3-204ENST00000540699 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
ATL3-204ENST00000540699 CUL7Q14999 1698 aa17.82■□□□□ 0.44
ATL3-204ENST00000540699 FHAD1B1AJZ9 1412 aa17.81■□□□□ 0.44
ATL3-204ENST00000540699 IGF1RP08069 1367 aa17.8■□□□□ 0.44
ATL3-204ENST00000540699 RUSC2Q8N2Y8 1516 aa17.79■□□□□ 0.44
ATL3-204ENST00000540699 AEBP2Q6ZN18 517 aaPredicted RBP17.79■□□□□ 0.44
ATL3-204ENST00000540699 GRIN2AQ12879 1464 aa17.77■□□□□ 0.44
ATL3-204ENST00000540699 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
ATL3-204ENST00000540699 NUP160Q12769 1436 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms