Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 AC244394.1-201ENST00000435000 1665 ntBASIC17.23■□□□□ 0.35
CTCFP49711 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.23■□□□□ 0.35
CTCFP49711 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CTCFP49711 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.23■□□□□ 0.35
CTCFP49711 AC053503.3-201ENST00000448375 114 ntBASIC17.23■□□□□ 0.35
CTCFP49711 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC17.23■□□□□ 0.35
CTCFP49711 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CTCFP49711 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 AC084262.1-201ENST00000567818 751 ntBASIC17.23■□□□□ 0.35
CTCFP49711 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CTCFP49711 AC005962.1-201ENST00000584100 773 ntBASIC17.23■□□□□ 0.35
CTCFP49711 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CTCFP49711 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CTCFP49711 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.23■□□□□ 0.35
CTCFP49711 MTHFR-217ENST00000641820 1569 ntBASIC17.23■□□□□ 0.35
CTCFP49711 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTCFP49711 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CTCFP49711 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 KRT17P5-201ENST00000332088 839 ntBASIC17.22■□□□□ 0.35
CTCFP49711 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 RN7SKP175-201ENST00000408472 289 ntBASIC17.22■□□□□ 0.35
CTCFP49711 MIR1301-201ENST00000408518 82 ntBASIC17.22■□□□□ 0.35
CTCFP49711 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.22■□□□□ 0.35
CTCFP49711 AC010900.1-201ENST00000449849 1296 ntBASIC17.22■□□□□ 0.35
CTCFP49711 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC17.22■□□□□ 0.35
CTCFP49711 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.22■□□□□ 0.35
CTCFP49711 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.22■□□□□ 0.35
CTCFP49711 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.22■□□□□ 0.35
CTCFP49711 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 MBP-238ENST00000580402 915 ntTSL 5 BASIC17.22■□□□□ 0.35
CTCFP49711 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.22■□□□□ 0.35
CTCFP49711 MIR6746-201ENST00000620971 63 ntBASIC17.22■□□□□ 0.35
CTCFP49711 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CTCFP49711 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.22■□□□□ 0.35
CTCFP49711 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 AL672207.1-201ENST00000328462 1570 ntBASIC17.22■□□□□ 0.35
CTCFP49711 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CTCFP49711 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.22■□□□□ 0.35
CTCFP49711 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CTCFP49711 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CTCFP49711 AC021305.1-201ENST00000520656 1514 ntBASIC17.21■□□□□ 0.35
CTCFP49711 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms