RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 NISCHQ9Y2I1 1504 aa32.86■■■□□ 2.85
CHMP1A-201ENST00000397901 CCDC180Q9P1Z9 1646 aa28.28■■■□□ 2.12
CHMP1A-201ENST00000397901 ZCCHC6Q5VYS8 1495 aaKnown RBP27.74■■■□□ 2.03
CHMP1A-201ENST00000397901 SHROOM4Q9ULL8 1493 aa27.7■■■□□ 2.03
CHMP1A-201ENST00000397901 SUPT5HO00267 1087 aaKnown RBP27.3■■□□□ 1.96
CHMP1A-201ENST00000397901 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
CHMP1A-201ENST00000397901 DCAF8L2P0C7V8 631 aa27■■□□□ 1.91
CHMP1A-201ENST00000397901 HRCP23327 699 aa26.64■■□□□ 1.86
CHMP1A-201ENST00000397901 MYO15BQ96JP2 1530 aa26.61■■□□□ 1.85
CHMP1A-201ENST00000397901 CHIC1Q5VXU3 224 aa26.6■■□□□ 1.85
CHMP1A-201ENST00000397901 PELP1Q8IZL8 1130 aaKnown RBP26.34■■□□□ 1.81
CHMP1A-201ENST00000397901 ABCC9O60706 1549 aa26.28■■□□□ 1.8
CHMP1A-201ENST00000397901 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
CHMP1A-201ENST00000397901 NACADO15069 1562 aa26.19■■□□□ 1.78
CHMP1A-201ENST00000397901 PCGF6Q9BYE7 350 aa26.17■■□□□ 1.78
CHMP1A-201ENST00000397901 LOC105371045A0A1W2PR82 267 aa25.91■■□□□ 1.74
CHMP1A-201ENST00000397901 PPARGC1BQ86YN6 1023 aaKnown RBP25.87■■□□□ 1.73
CHMP1A-201ENST00000397901 RB1CC1Q8TDY2 1594 aa25.82■■□□□ 1.72
CHMP1A-201ENST00000397901 RSF1Q96T23 1441 aaPredicted RBP25.78■■□□□ 1.72
CHMP1A-201ENST00000397901 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
CHMP1A-201ENST00000397901 TRIM26Q12899 539 aaPredicted RBP25.51■■□□□ 1.67
CHMP1A-201ENST00000397901 MYT1Q01538 1121 aa25.48■■□□□ 1.67
CHMP1A-201ENST00000397901 MROH2BQ7Z745 1585 aa25.46■■□□□ 1.67
CHMP1A-201ENST00000397901 UNC13AQ9UPW8 1703 aa25.44■■□□□ 1.66
CHMP1A-201ENST00000397901 TRIM41Q8WV44 630 aa25.33■■□□□ 1.65
CHMP1A-201ENST00000397901 WIZO95785 1651 aa25.3■■□□□ 1.64
CHMP1A-201ENST00000397901 SCAF1Q9H7N4 1312 aaKnown RBP25.29■■□□□ 1.64
CHMP1A-201ENST00000397901 BAZ1AQ9NRL2 1556 aaPredicted RBP25.29■■□□□ 1.64
CHMP1A-201ENST00000397901 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
CHMP1A-201ENST00000397901 SMARCA4P51532 1647 aa25.13■■□□□ 1.61
CHMP1A-201ENST00000397901 BICRAQ9NZM4 1560 aa25.13■■□□□ 1.61
CHMP1A-201ENST00000397901 EHMT2Q96KQ7 1210 aa25.12■■□□□ 1.61
CHMP1A-201ENST00000397901 ZEB1P37275 1124 aaPredicted RBP25.06■■□□□ 1.6
CHMP1A-201ENST00000397901 TOP2AP11388 1531 aaKnown RBP24.98■■□□□ 1.59
CHMP1A-201ENST00000397901 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
CHMP1A-201ENST00000397901 EIF4G1Q04637 1599 aaKnown RBP24.89■■□□□ 1.57
CHMP1A-201ENST00000397901 SMARCA2P51531 1590 aa24.8■■□□□ 1.56
CHMP1A-201ENST00000397901 CCDC88BA6NC98 1476 aa24.79■■□□□ 1.56
CHMP1A-201ENST00000397901 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
CHMP1A-201ENST00000397901 ACIN1Q9UKV3 1341 aaKnown RBP24.66■■□□□ 1.54
CHMP1A-201ENST00000397901 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
CHMP1A-201ENST00000397901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.53■■□□□ 1.52
CHMP1A-201ENST00000397901 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
CHMP1A-201ENST00000397901 NEUROD1Q13562 356 aa24.49■■□□□ 1.51
CHMP1A-201ENST00000397901 CCER1Q8TC90 406 aaPredicted RBP24.46■■□□□ 1.51
CHMP1A-201ENST00000397901 BAZ1BQ9UIG0 1483 aaKnown RBP24.44■■□□□ 1.5
CHMP1A-201ENST00000397901 GTF3C3Q9Y5Q9 886 aa24.4■■□□□ 1.5
CHMP1A-201ENST00000397901 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
CHMP1A-201ENST00000397901 CENPBP07199 599 aaPredicted RBP24.35■■□□□ 1.49
CHMP1A-201ENST00000397901 CEP162Q5TB80 1403 aa24.25■■□□□ 1.47
CHMP1A-201ENST00000397901 SOGA1O94964 1423 aa24.24■■□□□ 1.47
CHMP1A-201ENST00000397901 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
CHMP1A-201ENST00000397901 HMGXB3Q12766 1538 aa24.21■■□□□ 1.47
CHMP1A-201ENST00000397901 NCAPD3P42695 1498 aa24.21■■□□□ 1.47
CHMP1A-201ENST00000397901 EEA1Q15075 1411 aa24.14■■□□□ 1.45
CHMP1A-201ENST00000397901 SYNJ1O43426 1573 aa24.14■■□□□ 1.45
CHMP1A-201ENST00000397901 TNIKQ9UKE5 1360 aa24.14■■□□□ 1.45
CHMP1A-201ENST00000397901 DIEXFQ68CQ4 756 aaKnown RBP24.12■■□□□ 1.45
CHMP1A-201ENST00000397901 UBTFP17480 764 aaKnown RBP24.12■■□□□ 1.45
CHMP1A-201ENST00000397901 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
CHMP1A-201ENST00000397901 CSRNP3Q8WYN3 585 aa24.1■■□□□ 1.45
CHMP1A-201ENST00000397901 GOLGA3Q08378 1498 aa23.96■■□□□ 1.43
CHMP1A-201ENST00000397901 TOP2BQ02880 1626 aa23.94■■□□□ 1.42
CHMP1A-201ENST00000397901 BIVM-ERCC5R4GMW8 1640 aa23.9■■□□□ 1.42
CHMP1A-201ENST00000397901 CFTRP13569 1480 aa23.87■■□□□ 1.41
CHMP1A-201ENST00000397901 KIF21BO75037 1637 aa23.84■■□□□ 1.41
CHMP1A-201ENST00000397901 ZNF316A6NFI3 1004 aaPredicted RBP23.84■■□□□ 1.41
CHMP1A-201ENST00000397901 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
CHMP1A-201ENST00000397901 HNRNPUL2Q1KMD3 747 aaKnown RBP23.81■■□□□ 1.4
CHMP1A-201ENST00000397901 CC2D2AQ9P2K1 1620 aa23.78■■□□□ 1.4
CHMP1A-201ENST00000397901 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
CHMP1A-201ENST00000397901 CUX1P39880 1505 aa23.76■■□□□ 1.39
CHMP1A-201ENST00000397901 CLIP1P30622 1438 aa23.74■■□□□ 1.39
CHMP1A-201ENST00000397901 YTHDC1Q96MU7 727 aaKnown RBP23.69■■□□□ 1.38
CHMP1A-201ENST00000397901 RANGAP1P46060 587 aaPredicted RBP23.68■■□□□ 1.38
CHMP1A-201ENST00000397901 RAPGEF2Q9Y4G8 1499 aa23.65■■□□□ 1.38
CHMP1A-201ENST00000397901 CADPSQ9ULU8 1353 aa23.65■■□□□ 1.38
CHMP1A-201ENST00000397901 VPS8Q8N3P4 1428 aa23.64■■□□□ 1.38
CHMP1A-201ENST00000397901 APLP2Q06481 763 aa23.62■■□□□ 1.37
CHMP1A-201ENST00000397901 MIER1Q8N108 512 aa23.58■■□□□ 1.37
CHMP1A-201ENST00000397901 PRXQ9BXM0 1461 aa23.56■■□□□ 1.36
CHMP1A-201ENST00000397901 ERICH3Q5RHP9 1530 aa23.55■■□□□ 1.36
CHMP1A-201ENST00000397901 BCL11AQ9H165 835 aa23.54■■□□□ 1.36
CHMP1A-201ENST00000397901 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
CHMP1A-201ENST00000397901 ANP32EQ9BTT0 268 aa23.44■■□□□ 1.34
CHMP1A-201ENST00000397901 FANCD2Q9BXW9 1451 aa23.4■■□□□ 1.34
CHMP1A-201ENST00000397901 CLSPNQ9HAW4 1339 aa23.38■■□□□ 1.33
CHMP1A-201ENST00000397901 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
CHMP1A-201ENST00000397901 CUX2O14529 1486 aa23.35■■□□□ 1.33
CHMP1A-201ENST00000397901 NESP48681 1621 aa23.31■■□□□ 1.32
CHMP1A-201ENST00000397901 ARAP1Q96P48 1450 aa23.3■■□□□ 1.32
CHMP1A-201ENST00000397901 IGF1RP08069 1367 aa23.29■■□□□ 1.32
CHMP1A-201ENST00000397901 KANK4Q5T7N3 995 aaPredicted RBP23.29■■□□□ 1.32
CHMP1A-201ENST00000397901 DHX57Q6P158 1386 aaKnown RBP23.29■■□□□ 1.32
CHMP1A-201ENST00000397901 DNMBPQ6XZF7 1577 aa23.29■■□□□ 1.32
CHMP1A-201ENST00000397901 LAMC3Q9Y6N6 1575 aa23.26■■□□□ 1.31
CHMP1A-201ENST00000397901 TOPBP1Q92547 1522 aa23.22■■□□□ 1.31
CHMP1A-201ENST00000397901 SUPT16HQ9Y5B9 1047 aaKnown RBP23.19■■□□□ 1.3
CHMP1A-201ENST00000397901 TSHZ2Q9NRE2 1034 aa23.18■■□□□ 1.3
CHMP1A-201ENST00000397901 POLA1P09884 1462 aaPredicted RBP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms