RNA–Protein interactions for RNA: ENST00000447726.6

PBX3-207, Transcript of PBX homeobox 3, humanhuman

TSL 1 (best) BASIC

Gene PBX3, Length 2,789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX3-207ENST00000447726 NISCHQ9Y2I1 1504 aa33.24■■■□□ 2.91
PBX3-207ENST00000447726 SHROOM4Q9ULL8 1493 aa28.71■■■□□ 2.19
PBX3-207ENST00000447726 SUPT5HO00267 1087 aaKnown RBP28.27■■■□□ 2.12
PBX3-207ENST00000447726 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
PBX3-207ENST00000447726 CCDC180Q9P1Z9 1646 aa28■■■□□ 2.07
PBX3-207ENST00000447726 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
PBX3-207ENST00000447726 CHIC1Q5VXU3 224 aa27.56■■■□□ 2
PBX3-207ENST00000447726 MYO15BQ96JP2 1530 aa27.52■■■□□ 2
PBX3-207ENST00000447726 DCAF1Q9Y4B6 1507 aa27.18■■□□□ 1.94
PBX3-207ENST00000447726 HRCP23327 699 aa27.12■■□□□ 1.93
PBX3-207ENST00000447726 PCGF6Q9BYE7 350 aa27.01■■□□□ 1.91
PBX3-207ENST00000447726 LOC105371045A0A1W2PR82 267 aa26.83■■□□□ 1.89
PBX3-207ENST00000447726 PPARGC1BQ86YN6 1023 aaKnown RBP26.63■■□□□ 1.85
PBX3-207ENST00000447726 ABCC9O60706 1549 aa26.59■■□□□ 1.85
PBX3-207ENST00000447726 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
PBX3-207ENST00000447726 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
PBX3-207ENST00000447726 TRIM26Q12899 539 aaPredicted RBP26.35■■□□□ 1.81
PBX3-207ENST00000447726 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
PBX3-207ENST00000447726 RB1CC1Q8TDY2 1594 aa26.2■■□□□ 1.79
PBX3-207ENST00000447726 FAM9AQ8IZU1 332 aaPredicted RBP26.14■■□□□ 1.78
PBX3-207ENST00000447726 CECR2Q9BXF3 1484 aa26.01■■□□□ 1.75
PBX3-207ENST00000447726 EHMT2Q96KQ7 1210 aa25.97■■□□□ 1.75
PBX3-207ENST00000447726 MROH2BQ7Z745 1585 aa25.91■■□□□ 1.74
PBX3-207ENST00000447726 NACADO15069 1562 aa25.9■■□□□ 1.74
PBX3-207ENST00000447726 ZEB1P37275 1124 aaPredicted RBP25.82■■□□□ 1.72
PBX3-207ENST00000447726 WIZO95785 1651 aa25.76■■□□□ 1.71
PBX3-207ENST00000447726 BAZ1AQ9NRL2 1556 aaPredicted RBP25.55■■□□□ 1.68
PBX3-207ENST00000447726 EIF4G1Q04637 1599 aaKnown RBP25.47■■□□□ 1.67
PBX3-207ENST00000447726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.33■■□□□ 1.65
PBX3-207ENST00000447726 ABCC8Q09428 1581 aa25.32■■□□□ 1.64
PBX3-207ENST00000447726 TOP2AP11388 1531 aaKnown RBP25.3■■□□□ 1.64
PBX3-207ENST00000447726 CCDC88BA6NC98 1476 aa25.3■■□□□ 1.64
PBX3-207ENST00000447726 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
PBX3-207ENST00000447726 CCER1Q8TC90 406 aaPredicted RBP25.24■■□□□ 1.63
PBX3-207ENST00000447726 SMARCA2P51531 1590 aa25.2■■□□□ 1.63
PBX3-207ENST00000447726 TTBK1Q5TCY1 1321 aaPredicted RBP25.19■■□□□ 1.62
PBX3-207ENST00000447726 SCAF1Q9H7N4 1312 aaKnown RBP25.18■■□□□ 1.62
PBX3-207ENST00000447726 SOGA1O94964 1423 aa25.17■■□□□ 1.62
PBX3-207ENST00000447726 CEP162Q5TB80 1403 aa25.13■■□□□ 1.61
PBX3-207ENST00000447726 WRNQ14191 1432 aaPredicted RBP eCLIP25.11■■□□□ 1.61
PBX3-207ENST00000447726 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
PBX3-207ENST00000447726 TNIKQ9UKE5 1360 aa25.04■■□□□ 1.6
PBX3-207ENST00000447726 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
PBX3-207ENST00000447726 CSRNP3Q8WYN3 585 aa25.03■■□□□ 1.6
PBX3-207ENST00000447726 UBTFP17480 764 aaKnown RBP24.99■■□□□ 1.59
PBX3-207ENST00000447726 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
PBX3-207ENST00000447726 EEA1Q15075 1411 aa24.94■■□□□ 1.58
PBX3-207ENST00000447726 DIEXFQ68CQ4 756 aaKnown RBP24.88■■□□□ 1.57
PBX3-207ENST00000447726 GOLGA3Q08378 1498 aa24.83■■□□□ 1.57
PBX3-207ENST00000447726 ACIN1Q9UKV3 1341 aaKnown RBP24.83■■□□□ 1.56
PBX3-207ENST00000447726 NEUROD1Q13562 356 aa24.82■■□□□ 1.56
PBX3-207ENST00000447726 BICRAQ9NZM4 1560 aa24.8■■□□□ 1.56
PBX3-207ENST00000447726 PELP1Q8IZL8 1130 aaKnown RBP24.78■■□□□ 1.56
PBX3-207ENST00000447726 PEG3Q9GZU2 1588 aa24.7■■□□□ 1.54
PBX3-207ENST00000447726 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
PBX3-207ENST00000447726 CEP164Q9UPV0 1460 aa24.66■■□□□ 1.54
PBX3-207ENST00000447726 HNRNPUL2Q1KMD3 747 aaKnown RBP24.62■■□□□ 1.53
PBX3-207ENST00000447726 ZNF316A6NFI3 1004 aaPredicted RBP24.6■■□□□ 1.53
PBX3-207ENST00000447726 CLIP1P30622 1438 aa24.6■■□□□ 1.53
PBX3-207ENST00000447726 CENPBP07199 599 aaPredicted RBP24.59■■□□□ 1.53
PBX3-207ENST00000447726 KIF21BO75037 1637 aa24.59■■□□□ 1.53
PBX3-207ENST00000447726 ATAD2BQ9ULI0 1458 aa24.58■■□□□ 1.53
PBX3-207ENST00000447726 GTF3C3Q9Y5Q9 886 aa24.58■■□□□ 1.52
PBX3-207ENST00000447726 RANGAP1P46060 587 aaPredicted RBP24.52■■□□□ 1.52
PBX3-207ENST00000447726 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
PBX3-207ENST00000447726 RAPGEF2Q9Y4G8 1499 aa24.52■■□□□ 1.52
PBX3-207ENST00000447726 VPS8Q8N3P4 1428 aa24.51■■□□□ 1.51
PBX3-207ENST00000447726 APLP2Q06481 763 aa24.44■■□□□ 1.5
PBX3-207ENST00000447726 YTHDC1Q96MU7 727 aaKnown RBP24.37■■□□□ 1.49
PBX3-207ENST00000447726 MIER1Q8N108 512 aa24.35■■□□□ 1.49
PBX3-207ENST00000447726 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
PBX3-207ENST00000447726 PRXQ9BXM0 1461 aa24.2■■□□□ 1.46
PBX3-207ENST00000447726 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
PBX3-207ENST00000447726 KANK4Q5T7N3 995 aaPredicted RBP24.18■■□□□ 1.46
PBX3-207ENST00000447726 ARAP1Q96P48 1450 aa24.17■■□□□ 1.46
PBX3-207ENST00000447726 ERICH3Q5RHP9 1530 aa24.15■■□□□ 1.46
PBX3-207ENST00000447726 DHX57Q6P158 1386 aaKnown RBP24.11■■□□□ 1.45
PBX3-207ENST00000447726 CUX1P39880 1505 aa24.09■■□□□ 1.45
PBX3-207ENST00000447726 CLSPNQ9HAW4 1339 aa24.04■■□□□ 1.44
PBX3-207ENST00000447726 KIF27Q86VH2 1401 aa24.03■■□□□ 1.44
PBX3-207ENST00000447726 NCAPD3P42695 1498 aa24.03■■□□□ 1.44
PBX3-207ENST00000447726 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
PBX3-207ENST00000447726 RRBP1Q9P2E9 1410 aaKnown RBP23.97■■□□□ 1.43
PBX3-207ENST00000447726 ARHGAP35Q9NRY4 1499 aa23.93■■□□□ 1.42
PBX3-207ENST00000447726 CFTRP13569 1480 aa23.92■■□□□ 1.42
PBX3-207ENST00000447726 ITGAEP38570 1179 aa23.89■■□□□ 1.42
PBX3-207ENST00000447726 CCNB3Q8WWL7 1395 aa23.89■■□□□ 1.41
PBX3-207ENST00000447726 CUX2O14529 1486 aa23.83■■□□□ 1.41
PBX3-207ENST00000447726 IGF1RP08069 1367 aa23.79■■□□□ 1.4
PBX3-207ENST00000447726 RAB3GAP2Q9H2M9 1393 aa23.73■■□□□ 1.39
PBX3-207ENST00000447726 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
PBX3-207ENST00000447726 TIAM1Q13009 1591 aa23.66■■□□□ 1.38
PBX3-207ENST00000447726 MAPKBP1O60336 1514 aa23.64■■□□□ 1.38
PBX3-207ENST00000447726 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
PBX3-207ENST00000447726 FGD5Q6ZNL6 1462 aa23.62■■□□□ 1.37
PBX3-207ENST00000447726 PHLDB1Q86UU1 1377 aa23.62■■□□□ 1.37
PBX3-207ENST00000447726 SUPT16HQ9Y5B9 1047 aaKnown RBP23.61■■□□□ 1.37
PBX3-207ENST00000447726 LRRC9Q6ZRR7 1453 aa23.61■■□□□ 1.37
PBX3-207ENST00000447726 MAP3K1Q13233 1512 aa23.6■■□□□ 1.37
PBX3-207ENST00000447726 P3H3Q8IVL6 736 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms