RNA–Protein interactions for RNA: ENST00000343115.8

RDX-201, Transcript of radixin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RDX, Length 4,491 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDX-201ENST00000343115 NISCHQ9Y2I1 1504 aa30.23■■■□□ 2.43
RDX-201ENST00000343115 DCAF8L2P0C7V8 631 aa28.73■■■□□ 2.19
RDX-201ENST00000343115 SUPT5HO00267 1087 aaKnown RBP28.21■■■□□ 2.11
RDX-201ENST00000343115 SHROOM4Q9ULL8 1493 aa28.19■■■□□ 2.1
RDX-201ENST00000343115 EHMT2Q96KQ7 1210 aa26.84■■□□□ 1.89
RDX-201ENST00000343115 PCGF6Q9BYE7 350 aa26.57■■□□□ 1.84
RDX-201ENST00000343115 FAM9AQ8IZU1 332 aaPredicted RBP26.43■■□□□ 1.82
RDX-201ENST00000343115 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
RDX-201ENST00000343115 TRIM41Q8WV44 630 aa25.96■■□□□ 1.75
RDX-201ENST00000343115 LOC105371045A0A1W2PR82 267 aa25.95■■□□□ 1.75
RDX-201ENST00000343115 TTBK1Q5TCY1 1321 aaPredicted RBP25.91■■□□□ 1.74
RDX-201ENST00000343115 ABCC9O60706 1549 aa25.77■■□□□ 1.72
RDX-201ENST00000343115 HRCP23327 699 aa25.7■■□□□ 1.7
RDX-201ENST00000343115 PPARGC1BQ86YN6 1023 aaKnown RBP25.67■■□□□ 1.7
RDX-201ENST00000343115 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
RDX-201ENST00000343115 RANGAP1P46060 587 aaPredicted RBP25.41■■□□□ 1.66
RDX-201ENST00000343115 CCER1Q8TC90 406 aaPredicted RBP25.33■■□□□ 1.64
RDX-201ENST00000343115 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
RDX-201ENST00000343115 APLP2Q06481 763 aa25.24■■□□□ 1.63
RDX-201ENST00000343115 ZCCHC6Q5VYS8 1495 aaKnown RBP25.24■■□□□ 1.63
RDX-201ENST00000343115 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
RDX-201ENST00000343115 PABPN1Q86U42 306 aaKnown RBP eCLIP25.2■■□□□ 1.63
RDX-201ENST00000343115 CCDC180Q9P1Z9 1646 aa25.11■■□□□ 1.61
RDX-201ENST00000343115 MYO15BQ96JP2 1530 aa24.94■■□□□ 1.58
RDX-201ENST00000343115 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.86■■□□□ 1.57
RDX-201ENST00000343115 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
RDX-201ENST00000343115 YTHDC1Q96MU7 727 aaKnown RBP24.75■■□□□ 1.55
RDX-201ENST00000343115 CENPBP07199 599 aaPredicted RBP24.71■■□□□ 1.55
RDX-201ENST00000343115 HNRNPUL2Q1KMD3 747 aaKnown RBP24.66■■□□□ 1.54
RDX-201ENST00000343115 ATP1B4Q9UN42 357 aaPredicted RBP24.64■■□□□ 1.54
RDX-201ENST00000343115 ITGAEP38570 1179 aa24.45■■□□□ 1.5
RDX-201ENST00000343115 DCAF1Q9Y4B6 1507 aa24.43■■□□□ 1.5
RDX-201ENST00000343115 DIEXFQ68CQ4 756 aaKnown RBP24.34■■□□□ 1.49
RDX-201ENST00000343115 RSF1Q96T23 1441 aaPredicted RBP24.31■■□□□ 1.48
RDX-201ENST00000343115 PELP1Q8IZL8 1130 aaKnown RBP24.26■■□□□ 1.47
RDX-201ENST00000343115 CSRNP3Q8WYN3 585 aa24.19■■□□□ 1.46
RDX-201ENST00000343115 RB1CC1Q8TDY2 1594 aa24.09■■□□□ 1.45
RDX-201ENST00000343115 NACADO15069 1562 aa24.05■■□□□ 1.44
RDX-201ENST00000343115 CECR2Q9BXF3 1484 aa23.99■■□□□ 1.43
RDX-201ENST00000343115 GTF3C3Q9Y5Q9 886 aa23.98■■□□□ 1.43
RDX-201ENST00000343115 ZNF316A6NFI3 1004 aaPredicted RBP23.87■■□□□ 1.41
RDX-201ENST00000343115 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
RDX-201ENST00000343115 FAM50AQ14320 339 aaKnown RBP23.8■■□□□ 1.4
RDX-201ENST00000343115 NEUROD1Q13562 356 aa23.73■■□□□ 1.39
RDX-201ENST00000343115 P3H3Q8IVL6 736 aa23.72■■□□□ 1.39
RDX-201ENST00000343115 SCAF1Q9H7N4 1312 aaKnown RBP23.71■■□□□ 1.39
RDX-201ENST00000343115 NEFLP07196 543 aa23.7■■□□□ 1.38
RDX-201ENST00000343115 MROH2BQ7Z745 1585 aa23.64■■□□□ 1.38
RDX-201ENST00000343115 CNGB1Q14028 1251 aaPredicted RBP23.64■■□□□ 1.37
RDX-201ENST00000343115 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
RDX-201ENST00000343115 POLR3GLQ9BT43 218 aa23.52■■□□□ 1.36
RDX-201ENST00000343115 SOGA1O94964 1423 aa23.5■■□□□ 1.35
RDX-201ENST00000343115 CLIP1P30622 1438 aa23.47■■□□□ 1.35
RDX-201ENST00000343115 BCANQ96GW7 911 aa23.46■■□□□ 1.35
RDX-201ENST00000343115 MIER1Q8N108 512 aa23.45■■□□□ 1.34
RDX-201ENST00000343115 BAZ1AQ9NRL2 1556 aaPredicted RBP23.43■■□□□ 1.34
RDX-201ENST00000343115 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
RDX-201ENST00000343115 ABCC8Q09428 1581 aa23.41■■□□□ 1.34
RDX-201ENST00000343115 ERICH6Q7L0X2 663 aa23.39■■□□□ 1.34
RDX-201ENST00000343115 ARID3CA6NKF2 412 aa23.39■■□□□ 1.33
RDX-201ENST00000343115 TNIKQ9UKE5 1360 aa23.38■■□□□ 1.33
RDX-201ENST00000343115 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
RDX-201ENST00000343115 WIZO95785 1651 aa23.36■■□□□ 1.33
RDX-201ENST00000343115 TRIM52Q96A61 297 aa23.36■■□□□ 1.33
RDX-201ENST00000343115 BAZ1BQ9UIG0 1483 aaKnown RBP23.34■■□□□ 1.33
RDX-201ENST00000343115 GOLGA3Q08378 1498 aa23.34■■□□□ 1.33
RDX-201ENST00000343115 EEA1Q15075 1411 aa23.27■■□□□ 1.32
RDX-201ENST00000343115 FBLN2P98095 1184 aa23.24■■□□□ 1.31
RDX-201ENST00000343115 DDX10Q13206 875 aaKnown RBP23.21■■□□□ 1.31
RDX-201ENST00000343115 HIRIP3Q9BW71 556 aaPredicted RBP23.2■■□□□ 1.3
RDX-201ENST00000343115 ANP32CO43423 234 aa23.17■■□□□ 1.3
RDX-201ENST00000343115 MYT1Q01538 1121 aa23.13■■□□□ 1.29
RDX-201ENST00000343115 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
RDX-201ENST00000343115 ZNF326Q5BKZ1 582 aaKnown RBP23.11■■□□□ 1.29
RDX-201ENST00000343115 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
RDX-201ENST00000343115 CHIC2Q9UKJ5 165 aa23.02■■□□□ 1.28
RDX-201ENST00000343115 KANK4Q5T7N3 995 aaPredicted RBP22.99■■□□□ 1.27
RDX-201ENST00000343115 FKBP8Q14318 412 aa22.96■■□□□ 1.27
RDX-201ENST00000343115 SMARCA4P51532 1647 aa22.96■■□□□ 1.27
RDX-201ENST00000343115 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
RDX-201ENST00000343115 TONSLQ96HA7 1378 aa22.93■■□□□ 1.26
RDX-201ENST00000343115 ATAD2BQ9ULI0 1458 aa22.93■■□□□ 1.26
RDX-201ENST00000343115 MYT1LQ9UL68 1186 aa22.93■■□□□ 1.26
RDX-201ENST00000343115 SIN3AQ96ST3 1273 aa22.91■■□□□ 1.26
RDX-201ENST00000343115 KIF27Q86VH2 1401 aa22.91■■□□□ 1.26
RDX-201ENST00000343115 ZNF777Q9ULD5 760 aaPredicted RBP22.9■■□□□ 1.26
RDX-201ENST00000343115 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
RDX-201ENST00000343115 MTUS2Q5JR59 1369 aa22.82■■□□□ 1.24
RDX-201ENST00000343115 SMARCA2P51531 1590 aa22.82■■□□□ 1.24
RDX-201ENST00000343115 HNRNPUQ00839 825 aaKnown RBP eCLIP22.81■■□□□ 1.24
RDX-201ENST00000343115 RRP7BPQ9NSQ0 103 aa22.8■■□□□ 1.24
RDX-201ENST00000343115 RAPGEF2Q9Y4G8 1499 aa22.78■■□□□ 1.24
RDX-201ENST00000343115 CCNB3Q8WWL7 1395 aa22.75■■□□□ 1.23
RDX-201ENST00000343115 FAM9BQ8IZU0 186 aa22.72■■□□□ 1.23
RDX-201ENST00000343115 IRX6P78412 446 aaPredicted RBP22.71■■□□□ 1.23
RDX-201ENST00000343115 CUX2O14529 1486 aa22.7■■□□□ 1.22
RDX-201ENST00000343115 CDK11AQ9UQ88 783 aaPredicted RBP22.67■■□□□ 1.22
RDX-201ENST00000343115 CARMIL1Q5VZK9 1371 aa22.66■■□□□ 1.22
RDX-201ENST00000343115 CLSPNQ9HAW4 1339 aa22.62■■□□□ 1.21
RDX-201ENST00000343115 SENP3-EIF4A1A0A087X0R7 540 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms