RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 NISCHQ9Y2I1 1504 aa33.68■■■□□ 2.98
CXCL12-205ENST00000395794 CCDC180Q9P1Z9 1646 aa30.04■■■□□ 2.4
CXCL12-205ENST00000395794 ABCC9O60706 1549 aa29.78■■■□□ 2.36
CXCL12-205ENST00000395794 AEBP2Q6ZN18 517 aaPredicted RBP28.81■■■□□ 2.2
CXCL12-205ENST00000395794 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
CXCL12-205ENST00000395794 DCAF8L2P0C7V8 631 aa28.44■■■□□ 2.14
CXCL12-205ENST00000395794 NACADO15069 1562 aa28.38■■■□□ 2.13
CXCL12-205ENST00000395794 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.08
CXCL12-205ENST00000395794 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.07
CXCL12-205ENST00000395794 DCAF1Q9Y4B6 1507 aa27.83■■■□□ 2.05
CXCL12-205ENST00000395794 PABPN1Q86U42 306 aaKnown RBP eCLIP27.82■■■□□ 2.04
CXCL12-205ENST00000395794 UNC13AQ9UPW8 1703 aa27.7■■■□□ 2.03
CXCL12-205ENST00000395794 DNAJC5BQ9UF47 199 aa27.6■■■□□ 2.01
CXCL12-205ENST00000395794 BICRAQ9NZM4 1560 aa27.56■■■□□ 2
CXCL12-205ENST00000395794 SCRIBQ14160 1630 aa27.42■■□□□ 1.98
CXCL12-205ENST00000395794 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
CXCL12-205ENST00000395794 CHIC1Q5VXU3 224 aa27.14■■□□□ 1.94
CXCL12-205ENST00000395794 EIF4G1Q04637 1599 aaKnown RBP26.92■■□□□ 1.9
CXCL12-205ENST00000395794 CC2D2AQ9P2K1 1620 aa26.88■■□□□ 1.89
CXCL12-205ENST00000395794 CECR2Q9BXF3 1484 aa26.81■■□□□ 1.88
CXCL12-205ENST00000395794 NCAPD3P42695 1498 aa26.19■■□□□ 1.78
CXCL12-205ENST00000395794 SMARCA4P51532 1647 aa26.17■■□□□ 1.78
CXCL12-205ENST00000395794 ATAD2BQ9ULI0 1458 aa26.15■■□□□ 1.78
CXCL12-205ENST00000395794 BAZ1AQ9NRL2 1556 aaPredicted RBP26.15■■□□□ 1.78
CXCL12-205ENST00000395794 SMARCA2P51531 1590 aa26.12■■□□□ 1.77
CXCL12-205ENST00000395794 HMGXB3Q12766 1538 aa26■■□□□ 1.75
CXCL12-205ENST00000395794 BAZ1BQ9UIG0 1483 aaKnown RBP25.95■■□□□ 1.74
CXCL12-205ENST00000395794 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
CXCL12-205ENST00000395794 PEG3Q9GZU2 1588 aa25.9■■□□□ 1.74
CXCL12-205ENST00000395794 ERCC6Q03468 1493 aa25.76■■□□□ 1.71
CXCL12-205ENST00000395794 NESP48681 1621 aa25.63■■□□□ 1.69
CXCL12-205ENST00000395794 WIZO95785 1651 aa25.61■■□□□ 1.69
CXCL12-205ENST00000395794 LAMC3Q9Y6N6 1575 aa25.55■■□□□ 1.68
CXCL12-205ENST00000395794 RSF1Q96T23 1441 aaPredicted RBP25.54■■□□□ 1.68
CXCL12-205ENST00000395794 CUX2O14529 1486 aa25.54■■□□□ 1.68
CXCL12-205ENST00000395794 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
CXCL12-205ENST00000395794 CADPSQ9ULU8 1353 aa25.44■■□□□ 1.66
CXCL12-205ENST00000395794 TOP2AP11388 1531 aaKnown RBP25.36■■□□□ 1.65
CXCL12-205ENST00000395794 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
CXCL12-205ENST00000395794 KIF21AQ7Z4S6 1674 aa25.27■■□□□ 1.64
CXCL12-205ENST00000395794 CFTRP13569 1480 aa25.19■■□□□ 1.62
CXCL12-205ENST00000395794 DNAJC5Q9H3Z4 198 aa25.18■■□□□ 1.62
CXCL12-205ENST00000395794 MRC2Q9UBG0 1479 aa25.16■■□□□ 1.62
CXCL12-205ENST00000395794 CEP164Q9UPV0 1460 aa25.15■■□□□ 1.62
CXCL12-205ENST00000395794 FANCD2Q9BXW9 1451 aa25.14■■□□□ 1.61
CXCL12-205ENST00000395794 CCDC88BA6NC98 1476 aa25.08■■□□□ 1.6
CXCL12-205ENST00000395794 WDR62O43379 1518 aa25.06■■□□□ 1.6
CXCL12-205ENST00000395794 PRDM2Q13029 1718 aa24.87■■□□□ 1.57
CXCL12-205ENST00000395794 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
CXCL12-205ENST00000395794 SENP3Q9H4L4 574 aaPredicted RBP24.85■■□□□ 1.57
CXCL12-205ENST00000395794 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
CXCL12-205ENST00000395794 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
CXCL12-205ENST00000395794 TOPBP1Q92547 1522 aa24.67■■□□□ 1.54
CXCL12-205ENST00000395794 IFT140Q96RY7 1462 aa24.64■■□□□ 1.53
CXCL12-205ENST00000395794 DNMBPQ6XZF7 1577 aa24.62■■□□□ 1.53
CXCL12-205ENST00000395794 OSCARQ8IYS5 282 aa24.51■■□□□ 1.51
CXCL12-205ENST00000395794 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
CXCL12-205ENST00000395794 POLA1P09884 1462 aaPredicted RBP24.44■■□□□ 1.5
CXCL12-205ENST00000395794 SOGA1O94964 1423 aa24.4■■□□□ 1.5
CXCL12-205ENST00000395794 TARBP1Q13395 1621 aaKnown RBP24.39■■□□□ 1.49
CXCL12-205ENST00000395794 EIF4G3O43432 1585 aaKnown RBP24.38■■□□□ 1.49
CXCL12-205ENST00000395794 AQRO60306 1485 aaKnown RBP eCLIP24.37■■□□□ 1.49
CXCL12-205ENST00000395794 PHF23Q9BUL5 403 aaPredicted RBP24.36■■□□□ 1.49
CXCL12-205ENST00000395794 RAD54L2Q9Y4B4 1467 aa24.35■■□□□ 1.49
CXCL12-205ENST00000395794 CUX1P39880 1505 aa24.35■■□□□ 1.49
CXCL12-205ENST00000395794 FGD5Q6ZNL6 1462 aa24.34■■□□□ 1.49
CXCL12-205ENST00000395794 TDRD9Q8NDG6 1382 aaKnown RBP24.29■■□□□ 1.48
CXCL12-205ENST00000395794 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
CXCL12-205ENST00000395794 FBLN2P98095 1184 aa24.25■■□□□ 1.47
CXCL12-205ENST00000395794 WDR97A6NE52 1622 aa24.21■■□□□ 1.47
CXCL12-205ENST00000395794 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
CXCL12-205ENST00000395794 WRNQ14191 1432 aaPredicted RBP eCLIP24.13■■□□□ 1.45
CXCL12-205ENST00000395794 SNAPC4Q5SXM2 1469 aa24.13■■□□□ 1.45
CXCL12-205ENST00000395794 CHMP7Q8WUX9 453 aaPredicted RBP24.12■■□□□ 1.45
CXCL12-205ENST00000395794 CHD1O14646 1710 aa24.1■■□□□ 1.45
CXCL12-205ENST00000395794 MAGI1Q96QZ7 1491 aaPredicted RBP24.09■■□□□ 1.45
CXCL12-205ENST00000395794 ABCA10Q8WWZ4 1543 aa24.09■■□□□ 1.45
CXCL12-205ENST00000395794 GAPVD1Q14C86 1478 aa24.08■■□□□ 1.45
CXCL12-205ENST00000395794 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
CXCL12-205ENST00000395794 RIMBP3CA6NJZ7 1639 aa24.02■■□□□ 1.44
CXCL12-205ENST00000395794 RIMBP3BA6NNM3 1639 aa24.02■■□□□ 1.44
CXCL12-205ENST00000395794 RIMBP3Q9UFD9 1639 aa24.02■■□□□ 1.44
CXCL12-205ENST00000395794 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.44
CXCL12-205ENST00000395794 ARHGEF11O15085 1522 aa24.01■■□□□ 1.43
CXCL12-205ENST00000395794 SYNJ1O43426 1573 aa24.01■■□□□ 1.43
CXCL12-205ENST00000395794 SYNJ2O15056 1496 aa24■■□□□ 1.43
CXCL12-205ENST00000395794 ABCA5Q8WWZ7 1642 aa23.98■■□□□ 1.43
CXCL12-205ENST00000395794 PBRM1Q86U86 1689 aa23.97■■□□□ 1.43
CXCL12-205ENST00000395794 CYB5RLQ6IPT4 315 aa23.91■■□□□ 1.42
CXCL12-205ENST00000395794 CLASP1Q7Z460 1538 aa23.86■■□□□ 1.41
CXCL12-205ENST00000395794 FHAD1B1AJZ9 1412 aa23.81■■□□□ 1.4
CXCL12-205ENST00000395794 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
CXCL12-205ENST00000395794 GRIN2AQ12879 1464 aa23.8■■□□□ 1.4
CXCL12-205ENST00000395794 ADAMTS12P58397 1594 aa23.79■■□□□ 1.4
CXCL12-205ENST00000395794 ARAP1Q96P48 1450 aa23.79■■□□□ 1.4
CXCL12-205ENST00000395794 NUP160Q12769 1436 aa23.68■■□□□ 1.38
CXCL12-205ENST00000395794 KIF27Q86VH2 1401 aa23.68■■□□□ 1.38
CXCL12-205ENST00000395794 CEP170Q5SW79 1584 aa23.65■■□□□ 1.38
CXCL12-205ENST00000395794 TRHP20396 242 aaPredicted RBP23.59■■□□□ 1.37
CXCL12-205ENST00000395794 IGF1RP08069 1367 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms