RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NISCHQ9Y2I1 1504 aa35.94■■■■□ 3.34
PDLIM5-202ENST00000318007 CCDC180Q9P1Z9 1646 aa31.52■■■□□ 2.64
PDLIM5-202ENST00000318007 ABCC9O60706 1549 aa30.54■■■□□ 2.48
PDLIM5-202ENST00000318007 DCAF8L2P0C7V8 631 aa30.17■■■□□ 2.42
PDLIM5-202ENST00000318007 ZCCHC6Q5VYS8 1495 aaKnown RBP30.07■■■□□ 2.4
PDLIM5-202ENST00000318007 DCAF1Q9Y4B6 1507 aa29.56■■■□□ 2.32
PDLIM5-202ENST00000318007 NACADO15069 1562 aa29.5■■■□□ 2.31
PDLIM5-202ENST00000318007 RB1CC1Q8TDY2 1594 aa29.43■■■□□ 2.3
PDLIM5-202ENST00000318007 MYO15BQ96JP2 1530 aa29.39■■■□□ 2.3
PDLIM5-202ENST00000318007 SHROOM4Q9ULL8 1493 aa29.22■■■□□ 2.27
PDLIM5-202ENST00000318007 SCRIBQ14160 1630 aa29.13■■■□□ 2.25
PDLIM5-202ENST00000318007 UNC13AQ9UPW8 1703 aa28.88■■■□□ 2.21
PDLIM5-202ENST00000318007 PABPN1Q86U42 306 aaKnown RBP eCLIP28.75■■■□□ 2.19
PDLIM5-202ENST00000318007 BICRAQ9NZM4 1560 aa28.58■■■□□ 2.17
PDLIM5-202ENST00000318007 CECR2Q9BXF3 1484 aa28.07■■■□□ 2.08
PDLIM5-202ENST00000318007 MROH2BQ7Z745 1585 aa27.82■■■□□ 2.04
PDLIM5-202ENST00000318007 SUPT5HO00267 1087 aaKnown RBP27.8■■■□□ 2.04
PDLIM5-202ENST00000318007 EIF4G1Q04637 1599 aaKnown RBP27.79■■■□□ 2.04
PDLIM5-202ENST00000318007 BAZ1AQ9NRL2 1556 aaPredicted RBP27.79■■■□□ 2.04
PDLIM5-202ENST00000318007 SMARCA4P51532 1647 aa27.77■■■□□ 2.04
PDLIM5-202ENST00000318007 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.02
PDLIM5-202ENST00000318007 WIZO95785 1651 aa27.59■■■□□ 2.01
PDLIM5-202ENST00000318007 CC2D2AQ9P2K1 1620 aa27.55■■■□□ 2
PDLIM5-202ENST00000318007 DNAJC5BQ9UF47 199 aa27.44■■□□□ 1.98
PDLIM5-202ENST00000318007 ATAD2BQ9ULI0 1458 aa27.44■■□□□ 1.98
PDLIM5-202ENST00000318007 SMARCA2P51531 1590 aa27.37■■□□□ 1.97
PDLIM5-202ENST00000318007 PEG3Q9GZU2 1588 aa27.34■■□□□ 1.97
PDLIM5-202ENST00000318007 BAZ1BQ9UIG0 1483 aaKnown RBP27.3■■□□□ 1.96
PDLIM5-202ENST00000318007 NCAPD3P42695 1498 aa27.23■■□□□ 1.95
PDLIM5-202ENST00000318007 TOP2AP11388 1531 aaKnown RBP27.19■■□□□ 1.94
PDLIM5-202ENST00000318007 HMGXB3Q12766 1538 aa27.15■■□□□ 1.94
PDLIM5-202ENST00000318007 CCDC88BA6NC98 1476 aa26.95■■□□□ 1.91
PDLIM5-202ENST00000318007 NESP48681 1621 aa26.64■■□□□ 1.85
PDLIM5-202ENST00000318007 CADPSQ9ULU8 1353 aa26.55■■□□□ 1.84
PDLIM5-202ENST00000318007 CFTRP13569 1480 aa26.51■■□□□ 1.83
PDLIM5-202ENST00000318007 LAMC3Q9Y6N6 1575 aa26.43■■□□□ 1.82
PDLIM5-202ENST00000318007 PRDM2Q13029 1718 aa26.32■■□□□ 1.8
PDLIM5-202ENST00000318007 ABCC8Q09428 1581 aa26.32■■□□□ 1.8
PDLIM5-202ENST00000318007 FANCD2Q9BXW9 1451 aa26.31■■□□□ 1.8
PDLIM5-202ENST00000318007 KIF21AQ7Z4S6 1674 aa26.27■■□□□ 1.8
PDLIM5-202ENST00000318007 PDS5BQ9NTI5 1447 aa26.26■■□□□ 1.8
PDLIM5-202ENST00000318007 ERCC6Q03468 1493 aa26.23■■□□□ 1.79
PDLIM5-202ENST00000318007 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.78
PDLIM5-202ENST00000318007 CHIC1Q5VXU3 224 aa26.16■■□□□ 1.78
PDLIM5-202ENST00000318007 WRNQ14191 1432 aaPredicted RBP eCLIP26.11■■□□□ 1.77
PDLIM5-202ENST00000318007 TRIM41Q8WV44 630 aa26.08■■□□□ 1.77
PDLIM5-202ENST00000318007 SYNJ1O43426 1573 aa26.06■■□□□ 1.76
PDLIM5-202ENST00000318007 CUX1P39880 1505 aa26.03■■□□□ 1.76
PDLIM5-202ENST00000318007 URB2Q14146 1524 aaKnown RBP26.02■■□□□ 1.76
PDLIM5-202ENST00000318007 MRC2Q9UBG0 1479 aa25.98■■□□□ 1.75
PDLIM5-202ENST00000318007 TOPBP1Q92547 1522 aa25.95■■□□□ 1.74
PDLIM5-202ENST00000318007 DNMBPQ6XZF7 1577 aa25.92■■□□□ 1.74
PDLIM5-202ENST00000318007 THOC2Q8NI27 1593 aaKnown RBP25.92■■□□□ 1.74
PDLIM5-202ENST00000318007 TOP2BQ02880 1626 aa25.92■■□□□ 1.74
PDLIM5-202ENST00000318007 BIVM-ERCC5R4GMW8 1640 aa25.88■■□□□ 1.73
PDLIM5-202ENST00000318007 FGD5Q6ZNL6 1462 aa25.85■■□□□ 1.73
PDLIM5-202ENST00000318007 WDR62O43379 1518 aa25.84■■□□□ 1.73
PDLIM5-202ENST00000318007 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
PDLIM5-202ENST00000318007 RAD54L2Q9Y4B4 1467 aa25.77■■□□□ 1.72
PDLIM5-202ENST00000318007 FAM9AQ8IZU1 332 aaPredicted RBP25.75■■□□□ 1.71
PDLIM5-202ENST00000318007 SOGA1O94964 1423 aa25.7■■□□□ 1.71
PDLIM5-202ENST00000318007 CUX2O14529 1486 aa25.68■■□□□ 1.7
PDLIM5-202ENST00000318007 RUSC2Q8N2Y8 1516 aa25.63■■□□□ 1.69
PDLIM5-202ENST00000318007 TARBP1Q13395 1621 aaKnown RBP25.58■■□□□ 1.69
PDLIM5-202ENST00000318007 TDRD9Q8NDG6 1382 aaKnown RBP25.58■■□□□ 1.69
PDLIM5-202ENST00000318007 EHMT2Q96KQ7 1210 aa25.55■■□□□ 1.68
PDLIM5-202ENST00000318007 ZNF608Q9ULD9 1512 aaPredicted RBP25.55■■□□□ 1.68
PDLIM5-202ENST00000318007 IFT140Q96RY7 1462 aa25.54■■□□□ 1.68
PDLIM5-202ENST00000318007 ABCA10Q8WWZ4 1543 aa25.52■■□□□ 1.68
PDLIM5-202ENST00000318007 WDR97A6NE52 1622 aa25.51■■□□□ 1.67
PDLIM5-202ENST00000318007 AQRO60306 1485 aaKnown RBP eCLIP25.5■■□□□ 1.67
PDLIM5-202ENST00000318007 KIF27Q86VH2 1401 aa25.47■■□□□ 1.67
PDLIM5-202ENST00000318007 EIF4G3O43432 1585 aaKnown RBP25.42■■□□□ 1.66
PDLIM5-202ENST00000318007 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
PDLIM5-202ENST00000318007 ABCA5Q8WWZ7 1642 aa25.39■■□□□ 1.65
PDLIM5-202ENST00000318007 CSRNP3Q8WYN3 585 aa25.35■■□□□ 1.65
PDLIM5-202ENST00000318007 PBRM1Q86U86 1689 aa25.31■■□□□ 1.64
PDLIM5-202ENST00000318007 EEA1Q15075 1411 aa25.31■■□□□ 1.64
PDLIM5-202ENST00000318007 IGF1RP08069 1367 aa25.3■■□□□ 1.64
PDLIM5-202ENST00000318007 LOC105371045A0A1W2PR82 267 aa25.27■■□□□ 1.64
PDLIM5-202ENST00000318007 GRIN2BQ13224 1484 aa25.26■■□□□ 1.63
PDLIM5-202ENST00000318007 SNAPC4Q5SXM2 1469 aa25.23■■□□□ 1.63
PDLIM5-202ENST00000318007 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
PDLIM5-202ENST00000318007 FBLN2P98095 1184 aa25.21■■□□□ 1.63
PDLIM5-202ENST00000318007 CARMIL1Q5VZK9 1371 aa25.19■■□□□ 1.62
PDLIM5-202ENST00000318007 RAPGEF2Q9Y4G8 1499 aa25.16■■□□□ 1.62
PDLIM5-202ENST00000318007 PRXQ9BXM0 1461 aa25.12■■□□□ 1.61
PDLIM5-202ENST00000318007 ADAMTS12P58397 1594 aa25.12■■□□□ 1.61
PDLIM5-202ENST00000318007 CUL7Q14999 1698 aa25.12■■□□□ 1.61
PDLIM5-202ENST00000318007 UBTFP17480 764 aaKnown RBP25.1■■□□□ 1.61
PDLIM5-202ENST00000318007 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
PDLIM5-202ENST00000318007 MAGI1Q96QZ7 1491 aaPredicted RBP25.08■■□□□ 1.61
PDLIM5-202ENST00000318007 FHAD1B1AJZ9 1412 aa25.07■■□□□ 1.6
PDLIM5-202ENST00000318007 KIF21BO75037 1637 aa25.07■■□□□ 1.6
PDLIM5-202ENST00000318007 RANGAP1P46060 587 aaPredicted RBP25.05■■□□□ 1.6
PDLIM5-202ENST00000318007 GOLGA3Q08378 1498 aa25.05■■□□□ 1.6
PDLIM5-202ENST00000318007 SYNJ2O15056 1496 aa25.02■■□□□ 1.6
PDLIM5-202ENST00000318007 AEBP2Q6ZN18 517 aaPredicted RBP24.99■■□□□ 1.59
PDLIM5-202ENST00000318007 CHD1O14646 1710 aa24.98■■□□□ 1.59
PDLIM5-202ENST00000318007 GRIN2AQ12879 1464 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms