Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 AC135586.1-201ENST00000539323 574 ntBASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 AL645728.2-202ENST00000641679 227 ntBASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC39Q9UFE4 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC39Q9UFE4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC39Q9UFE4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.46■□□□□ 0.38
CCDC39Q9UFE4 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 PMS2P2-201ENST00000425039 1128 ntBASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 GHSR-202ENST00000427970 912 ntBASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AC000095.1-201ENST00000603208 874 ntBASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 AC015802.1-201ENST00000588104 1449 ntBASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC39Q9UFE4 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC39Q9UFE4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms