RNA–Protein interactions for RNA: ENST00000499732.2

NEAT1-201, nuclear paraspeckle assembly transcript 1, humanhuman

TSL 2 BASIC

Gene NEAT1, Length 1,811 nt, Biotype lincRNA, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEAT1-201ENST00000499732 NISCHQ9Y2I1 1504 aa32.04■■■□□ 2.72
NEAT1-201ENST00000499732 CCDC180Q9P1Z9 1646 aa28.14■■■□□ 2.1
NEAT1-201ENST00000499732 ABCC9O60706 1549 aa27.84■■■□□ 2.05
NEAT1-201ENST00000499732 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
NEAT1-201ENST00000499732 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
NEAT1-201ENST00000499732 DCAF1Q9Y4B6 1507 aa26.55■■□□□ 1.84
NEAT1-201ENST00000499732 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
NEAT1-201ENST00000499732 NACADO15069 1562 aa26.41■■□□□ 1.82
NEAT1-201ENST00000499732 MYO15BQ96JP2 1530 aa26.33■■□□□ 1.8
NEAT1-201ENST00000499732 SHROOM4Q9ULL8 1493 aa26.05■■□□□ 1.76
NEAT1-201ENST00000499732 DNAJC5BQ9UF47 199 aa26.03■■□□□ 1.76
NEAT1-201ENST00000499732 PABPN1Q86U42 306 aaKnown RBP eCLIP25.95■■□□□ 1.74
NEAT1-201ENST00000499732 SCRIBQ14160 1630 aa25.82■■□□□ 1.72
NEAT1-201ENST00000499732 UNC13AQ9UPW8 1703 aa25.74■■□□□ 1.71
NEAT1-201ENST00000499732 BICRAQ9NZM4 1560 aa25.68■■□□□ 1.7
NEAT1-201ENST00000499732 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
NEAT1-201ENST00000499732 CC2D2AQ9P2K1 1620 aa25.12■■□□□ 1.61
NEAT1-201ENST00000499732 SUPT5HO00267 1087 aaKnown RBP25.12■■□□□ 1.61
NEAT1-201ENST00000499732 EIF4G1Q04637 1599 aaKnown RBP25.11■■□□□ 1.61
NEAT1-201ENST00000499732 BAZ1AQ9NRL2 1556 aaPredicted RBP24.78■■□□□ 1.56
NEAT1-201ENST00000499732 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
NEAT1-201ENST00000499732 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
NEAT1-201ENST00000499732 SMARCA4P51532 1647 aa24.72■■□□□ 1.55
NEAT1-201ENST00000499732 WIZO95785 1651 aa24.53■■□□□ 1.52
NEAT1-201ENST00000499732 PEG3Q9GZU2 1588 aa24.43■■□□□ 1.5
NEAT1-201ENST00000499732 NCAPD3P42695 1498 aa24.39■■□□□ 1.5
NEAT1-201ENST00000499732 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
NEAT1-201ENST00000499732 ATAD2BQ9ULI0 1458 aa24.36■■□□□ 1.49
NEAT1-201ENST00000499732 TOP2AP11388 1531 aaKnown RBP24.29■■□□□ 1.48
NEAT1-201ENST00000499732 BAZ1BQ9UIG0 1483 aaKnown RBP24.23■■□□□ 1.47
NEAT1-201ENST00000499732 HMGXB3Q12766 1538 aa24.19■■□□□ 1.46
NEAT1-201ENST00000499732 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
NEAT1-201ENST00000499732 ERCC6Q03468 1493 aa24.12■■□□□ 1.45
NEAT1-201ENST00000499732 CUX2O14529 1486 aa24.07■■□□□ 1.44
NEAT1-201ENST00000499732 CCDC88BA6NC98 1476 aa23.99■■□□□ 1.43
NEAT1-201ENST00000499732 DNAJC5Q9H3Z4 198 aa23.99■■□□□ 1.43
NEAT1-201ENST00000499732 NESP48681 1621 aa23.88■■□□□ 1.41
NEAT1-201ENST00000499732 LAMC3Q9Y6N6 1575 aa23.81■■□□□ 1.4
NEAT1-201ENST00000499732 HRCP23327 699 aa23.81■■□□□ 1.4
NEAT1-201ENST00000499732 PDS5BQ9NTI5 1447 aa23.75■■□□□ 1.39
NEAT1-201ENST00000499732 CADPSQ9ULU8 1353 aa23.67■■□□□ 1.38
NEAT1-201ENST00000499732 THOC2Q8NI27 1593 aaKnown RBP23.63■■□□□ 1.37
NEAT1-201ENST00000499732 CFTRP13569 1480 aa23.58■■□□□ 1.37
NEAT1-201ENST00000499732 TRIM41Q8WV44 630 aa23.58■■□□□ 1.37
NEAT1-201ENST00000499732 KIF21AQ7Z4S6 1674 aa23.52■■□□□ 1.36
NEAT1-201ENST00000499732 PRDM2Q13029 1718 aa23.51■■□□□ 1.35
NEAT1-201ENST00000499732 MRC2Q9UBG0 1479 aa23.48■■□□□ 1.35
NEAT1-201ENST00000499732 ABCC8Q09428 1581 aa23.48■■□□□ 1.35
NEAT1-201ENST00000499732 PCGF6Q9BYE7 350 aa23.47■■□□□ 1.35
NEAT1-201ENST00000499732 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
NEAT1-201ENST00000499732 WDR62O43379 1518 aa23.39■■□□□ 1.33
NEAT1-201ENST00000499732 FANCD2Q9BXW9 1451 aa23.36■■□□□ 1.33
NEAT1-201ENST00000499732 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.32
NEAT1-201ENST00000499732 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
NEAT1-201ENST00000499732 SYNJ1O43426 1573 aa23.23■■□□□ 1.31
NEAT1-201ENST00000499732 FAM9AQ8IZU1 332 aaPredicted RBP23.17■■□□□ 1.3
NEAT1-201ENST00000499732 CUX1P39880 1505 aa23.17■■□□□ 1.3
NEAT1-201ENST00000499732 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
NEAT1-201ENST00000499732 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
NEAT1-201ENST00000499732 TRIM26Q12899 539 aaPredicted RBP23.13■■□□□ 1.29
NEAT1-201ENST00000499732 URB2Q14146 1524 aaKnown RBP23.12■■□□□ 1.29
NEAT1-201ENST00000499732 DNMBPQ6XZF7 1577 aa23.07■■□□□ 1.28
NEAT1-201ENST00000499732 PPARGC1BQ86YN6 1023 aaKnown RBP23.05■■□□□ 1.28
NEAT1-201ENST00000499732 SOGA1O94964 1423 aa23.05■■□□□ 1.28
NEAT1-201ENST00000499732 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
NEAT1-201ENST00000499732 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
NEAT1-201ENST00000499732 EEA1Q15075 1411 aa22.99■■□□□ 1.27
NEAT1-201ENST00000499732 RUSC2Q8N2Y8 1516 aa22.97■■□□□ 1.27
NEAT1-201ENST00000499732 FGD5Q6ZNL6 1462 aa22.97■■□□□ 1.27
NEAT1-201ENST00000499732 IFT140Q96RY7 1462 aa22.95■■□□□ 1.27
NEAT1-201ENST00000499732 POLA1P09884 1462 aaPredicted RBP22.89■■□□□ 1.26
NEAT1-201ENST00000499732 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
NEAT1-201ENST00000499732 ZEB1P37275 1124 aaPredicted RBP22.85■■□□□ 1.25
NEAT1-201ENST00000499732 CSRNP3Q8WYN3 585 aa22.83■■□□□ 1.25
NEAT1-201ENST00000499732 ZNF608Q9ULD9 1512 aaPredicted RBP22.82■■□□□ 1.24
NEAT1-201ENST00000499732 RAD54L2Q9Y4B4 1467 aa22.8■■□□□ 1.24
NEAT1-201ENST00000499732 KIF27Q86VH2 1401 aa22.76■■□□□ 1.23
NEAT1-201ENST00000499732 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
NEAT1-201ENST00000499732 ABCA10Q8WWZ4 1543 aa22.74■■□□□ 1.23
NEAT1-201ENST00000499732 KIF21BO75037 1637 aa22.74■■□□□ 1.23
NEAT1-201ENST00000499732 TARBP1Q13395 1621 aaKnown RBP22.72■■□□□ 1.23
NEAT1-201ENST00000499732 GOLGA3Q08378 1498 aa22.71■■□□□ 1.23
NEAT1-201ENST00000499732 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
NEAT1-201ENST00000499732 TNIKQ9UKE5 1360 aa22.65■■□□□ 1.22
NEAT1-201ENST00000499732 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.224e-14■□□□□ 8.2
NEAT1-201ENST00000499732 ABCA5Q8WWZ7 1642 aa22.62■■□□□ 1.21
NEAT1-201ENST00000499732 TDRD9Q8NDG6 1382 aaKnown RBP22.58■■□□□ 1.21
NEAT1-201ENST00000499732 RAPGEF2Q9Y4G8 1499 aa22.57■■□□□ 1.2
NEAT1-201ENST00000499732 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
NEAT1-201ENST00000499732 FBLN2P98095 1184 aa22.57■■□□□ 1.2
NEAT1-201ENST00000499732 IGF1RP08069 1367 aa22.56■■□□□ 1.2
NEAT1-201ENST00000499732 PRXQ9BXM0 1461 aa22.56■■□□□ 1.2
NEAT1-201ENST00000499732 RIMBP3CA6NJZ7 1639 aa22.55■■□□□ 1.2
NEAT1-201ENST00000499732 RIMBP3BA6NNM3 1639 aa22.55■■□□□ 1.2
NEAT1-201ENST00000499732 RIMBP3Q9UFD9 1639 aa22.55■■□□□ 1.2
NEAT1-201ENST00000499732 GAPVD1Q14C86 1478 aa22.55■■□□□ 1.2
NEAT1-201ENST00000499732 UBTFP17480 764 aaKnown RBP22.54■■□□□ 1.2
NEAT1-201ENST00000499732 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
NEAT1-201ENST00000499732 ERICH3Q5RHP9 1530 aa22.54■■□□□ 1.2
NEAT1-201ENST00000499732 PBRM1Q86U86 1689 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms