Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RIPK2O43353 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RIPK2O43353 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
RIPK2O43353 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RIPK2O43353 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.43■□□□□ 0.06
RIPK2O43353 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 KRT8P22-201ENST00000562317 1415 ntBASIC15.43■□□□□ 0.06
RIPK2O43353 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RIPK2O43353 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 AC105206.1-202ENST00000314927 2368 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 INE2-201ENST00000630399 1874 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
RIPK2O43353 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 AL080243.2-201ENST00000418783 582 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 GPS2P2-201ENST00000430745 888 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 SPDYE14P-201ENST00000442619 822 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.42■□□□□ 0.06
RIPK2O43353 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 AL033527.5-202ENST00000641632 1098 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 AC130686.1-201ENST00000622936 2466 ntBASIC15.42■□□□□ 0.06
RIPK2O43353 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
RIPK2O43353 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RIPK2O43353 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.42■□□□□ 0.06
RIPK2O43353 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.42■□□□□ 0.06
RIPK2O43353 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
RIPK2O43353 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RIPK2O43353 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.41■□□□□ 0.06
RIPK2O43353 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.41■□□□□ 0.06
RIPK2O43353 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 KRT126P-201ENST00000549467 1181 ntBASIC15.41■□□□□ 0.06
RIPK2O43353 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.41■□□□□ 0.06
RIPK2O43353 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.41■□□□□ 0.06
RIPK2O43353 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
RIPK2O43353 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RIPK2O43353 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms