RNA–Protein interactions for RNA: ENST00000260595.9

CGREF1-201, Transcript of cell growth regulator with EF-hand domain 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CGREF1, Length 1,177 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CGREF1-201ENST00000260595 NISCHQ9Y2I1 1504 aa42.14■■■■■ 4.34
CGREF1-201ENST00000260595 CCDC180Q9P1Z9 1646 aa37.65■■■■□ 3.62
CGREF1-201ENST00000260595 ABCC9O60706 1549 aa37.51■■■■□ 3.6
CGREF1-201ENST00000260595 RB1CC1Q8TDY2 1594 aa35.76■■■■□ 3.32
CGREF1-201ENST00000260595 NACADO15069 1562 aa35.59■■■■□ 3.29
CGREF1-201ENST00000260595 DCAF8L2P0C7V8 631 aa35.45■■■■□ 3.27
CGREF1-201ENST00000260595 MYO15BQ96JP2 1530 aa35.21■■■■□ 3.23
CGREF1-201ENST00000260595 DNAJC5BQ9UF47 199 aa35.12■■■■□ 3.21
CGREF1-201ENST00000260595 PABPN1Q86U42 306 aaKnown RBP eCLIP35■■■■□ 3.19
CGREF1-201ENST00000260595 ZCCHC6Q5VYS8 1495 aaKnown RBP34.96■■■■□ 3.19
CGREF1-201ENST00000260595 UNC13AQ9UPW8 1703 aa34.91■■■■□ 3.18
CGREF1-201ENST00000260595 DCAF1Q9Y4B6 1507 aa34.82■■■■□ 3.16
CGREF1-201ENST00000260595 BICRAQ9NZM4 1560 aa34.77■■■■□ 3.16
CGREF1-201ENST00000260595 SCRIBQ14160 1630 aa34.33■■■■□ 3.09
CGREF1-201ENST00000260595 SHROOM4Q9ULL8 1493 aa34.29■■■■□ 3.08
CGREF1-201ENST00000260595 CC2D2AQ9P2K1 1620 aa33.89■■■■□ 3.02
CGREF1-201ENST00000260595 EIF4G1Q04637 1599 aaKnown RBP33.87■■■■□ 3.01
CGREF1-201ENST00000260595 CECR2Q9BXF3 1484 aa33.78■■■■□ 3
CGREF1-201ENST00000260595 NCAPD3P42695 1498 aa32.91■■■□□ 2.86
CGREF1-201ENST00000260595 ATAD2BQ9ULI0 1458 aa32.82■■■□□ 2.84
CGREF1-201ENST00000260595 SMARCA4P51532 1647 aa32.79■■■□□ 2.84
CGREF1-201ENST00000260595 SMARCA2P51531 1590 aa32.69■■■□□ 2.82
CGREF1-201ENST00000260595 BAZ1AQ9NRL2 1556 aaPredicted RBP32.66■■■□□ 2.82
CGREF1-201ENST00000260595 HMGXB3Q12766 1538 aa32.63■■■□□ 2.81
CGREF1-201ENST00000260595 PEG3Q9GZU2 1588 aa32.5■■■□□ 2.79
CGREF1-201ENST00000260595 MROH2BQ7Z745 1585 aa32.48■■■□□ 2.79
CGREF1-201ENST00000260595 BAZ1BQ9UIG0 1483 aaKnown RBP32.47■■■□□ 2.79
CGREF1-201ENST00000260595 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
CGREF1-201ENST00000260595 NESP48681 1621 aa32.3■■■□□ 2.76
CGREF1-201ENST00000260595 CUX2O14529 1486 aa32.25■■■□□ 2.75
CGREF1-201ENST00000260595 LAMC3Q9Y6N6 1575 aa32.07■■■□□ 2.72
CGREF1-201ENST00000260595 DNAJC5Q9H3Z4 198 aa32.07■■■□□ 2.72
CGREF1-201ENST00000260595 WIZO95785 1651 aa32.05■■■□□ 2.72
CGREF1-201ENST00000260595 CADPSQ9ULU8 1353 aa31.92■■■□□ 2.7
CGREF1-201ENST00000260595 PDS5BQ9NTI5 1447 aa31.91■■■□□ 2.7
CGREF1-201ENST00000260595 RSF1Q96T23 1441 aaPredicted RBP31.9■■■□□ 2.7
CGREF1-201ENST00000260595 THOC2Q8NI27 1593 aaKnown RBP31.9■■■□□ 2.7
CGREF1-201ENST00000260595 KIF21AQ7Z4S6 1674 aa31.81■■■□□ 2.68
CGREF1-201ENST00000260595 TOP2AP11388 1531 aaKnown RBP31.67■■■□□ 2.66
CGREF1-201ENST00000260595 MRC2Q9UBG0 1479 aa31.61■■■□□ 2.65
CGREF1-201ENST00000260595 CFTRP13569 1480 aa31.59■■■□□ 2.65
CGREF1-201ENST00000260595 WDR62O43379 1518 aa31.53■■■□□ 2.64
CGREF1-201ENST00000260595 FANCD2Q9BXW9 1451 aa31.52■■■□□ 2.64
CGREF1-201ENST00000260595 CEP164Q9UPV0 1460 aa31.51■■■□□ 2.63
CGREF1-201ENST00000260595 CCDC88BA6NC98 1476 aa31.35■■■□□ 2.61
CGREF1-201ENST00000260595 URB2Q14146 1524 aaKnown RBP31.26■■■□□ 2.59
CGREF1-201ENST00000260595 PRDM2Q13029 1718 aa31.14■■■□□ 2.58
CGREF1-201ENST00000260595 TOPBP1Q92547 1522 aa30.95■■■□□ 2.55
CGREF1-201ENST00000260595 IFT140Q96RY7 1462 aa30.89■■■□□ 2.54
CGREF1-201ENST00000260595 ABCC8Q09428 1581 aa30.88■■■□□ 2.53
CGREF1-201ENST00000260595 ZNF608Q9ULD9 1512 aaPredicted RBP30.85■■■□□ 2.53
CGREF1-201ENST00000260595 OSCARQ8IYS5 282 aa30.84■■■□□ 2.53
CGREF1-201ENST00000260595 DNMBPQ6XZF7 1577 aa30.83■■■□□ 2.53
CGREF1-201ENST00000260595 TRIM41Q8WV44 630 aa30.68■■■□□ 2.5
CGREF1-201ENST00000260595 TARBP1Q13395 1621 aaKnown RBP30.65■■■□□ 2.5
CGREF1-201ENST00000260595 POLA1P09884 1462 aaPredicted RBP30.64■■■□□ 2.5
CGREF1-201ENST00000260595 EIF4G3O43432 1585 aaKnown RBP30.62■■■□□ 2.49
CGREF1-201ENST00000260595 AQRO60306 1485 aaKnown RBP eCLIP30.6■■■□□ 2.49
CGREF1-201ENST00000260595 SUPT5HO00267 1087 aaKnown RBP30.59■■■□□ 2.49
CGREF1-201ENST00000260595 RAD54L2Q9Y4B4 1467 aa30.54■■■□□ 2.48
CGREF1-201ENST00000260595 SOGA1O94964 1423 aa30.52■■■□□ 2.48
CGREF1-201ENST00000260595 CUX1P39880 1505 aa30.49■■■□□ 2.47
CGREF1-201ENST00000260595 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
CGREF1-201ENST00000260595 TDRD9Q8NDG6 1382 aaKnown RBP30.44■■■□□ 2.46
CGREF1-201ENST00000260595 RIMBP3CA6NJZ7 1639 aa30.36■■■□□ 2.45
CGREF1-201ENST00000260595 RIMBP3BA6NNM3 1639 aa30.36■■■□□ 2.45
CGREF1-201ENST00000260595 RIMBP3Q9UFD9 1639 aa30.36■■■□□ 2.45
CGREF1-201ENST00000260595 CHD1O14646 1710 aa30.33■■■□□ 2.45
CGREF1-201ENST00000260595 FBLN2P98095 1184 aa30.32■■■□□ 2.44
CGREF1-201ENST00000260595 WDR97A6NE52 1622 aa30.32■■■□□ 2.44
CGREF1-201ENST00000260595 ARHGEF11O15085 1522 aa30.32■■■□□ 2.44
CGREF1-201ENST00000260595 SNAPC4Q5SXM2 1469 aa30.26■■■□□ 2.44
CGREF1-201ENST00000260595 GRIN2BQ13224 1484 aa30.22■■■□□ 2.43
CGREF1-201ENST00000260595 MAGI1Q96QZ7 1491 aaPredicted RBP30.19■■■□□ 2.42
CGREF1-201ENST00000260595 ABCA10Q8WWZ4 1543 aa30.16■■■□□ 2.42
CGREF1-201ENST00000260595 CHMP7Q8WUX9 453 aaPredicted RBP30.15■■■□□ 2.42
CGREF1-201ENST00000260595 GAPVD1Q14C86 1478 aa30.13■■■□□ 2.41
CGREF1-201ENST00000260595 CYB5RLQ6IPT4 315 aa30.1■■■□□ 2.41
CGREF1-201ENST00000260595 SYNJ2O15056 1496 aa30.09■■■□□ 2.41
CGREF1-201ENST00000260595 WRNQ14191 1432 aaPredicted RBP eCLIP30.06■■■□□ 2.4
CGREF1-201ENST00000260595 ABCA5Q8WWZ7 1642 aa30.06■■■□□ 2.4
CGREF1-201ENST00000260595 CLASP1Q7Z460 1538 aa30.06■■■□□ 2.4
CGREF1-201ENST00000260595 ARAP1Q96P48 1450 aa30.05■■■□□ 2.4
CGREF1-201ENST00000260595 PBRM1Q86U86 1689 aa30.03■■■□□ 2.4
CGREF1-201ENST00000260595 TOP2BQ02880 1626 aa30.03■■■□□ 2.4
CGREF1-201ENST00000260595 SYNJ1O43426 1573 aa30.02■■■□□ 2.4
CGREF1-201ENST00000260595 BIVM-ERCC5R4GMW8 1640 aa30.01■■■□□ 2.39
CGREF1-201ENST00000260595 GRIN2AQ12879 1464 aa29.82■■■□□ 2.36
CGREF1-201ENST00000260595 ADAMTS12P58397 1594 aa29.81■■■□□ 2.36
CGREF1-201ENST00000260595 FHAD1B1AJZ9 1412 aa29.77■■■□□ 2.36
CGREF1-201ENST00000260595 ERICH3Q5RHP9 1530 aa29.76■■■□□ 2.35
CGREF1-201ENST00000260595 NUP160Q12769 1436 aa29.75■■■□□ 2.35
CGREF1-201ENST00000260595 CEP170Q5SW79 1584 aa29.7■■■□□ 2.35
CGREF1-201ENST00000260595 TRHP20396 242 aaPredicted RBP29.66■■■□□ 2.34
CGREF1-201ENST00000260595 ERCC6L2Q5T890 1561 aa29.62■■■□□ 2.33
CGREF1-201ENST00000260595 SHROOM2Q13796 1616 aa29.56■■■□□ 2.32
CGREF1-201ENST00000260595 IGF1RP08069 1367 aa29.49■■■□□ 2.31
CGREF1-201ENST00000260595 KIF27Q86VH2 1401 aa29.46■■■□□ 2.31
CGREF1-201ENST00000260595 JPH4Q96JJ6 628 aa29.46■■■□□ 2.31
CGREF1-201ENST00000260595 PRG4Q92954 1404 aaPredicted RBP29.43■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 196.5 ms