RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NISCHQ9Y2I1 1504 aa33.5■■■□□ 2.95
CCDC47-201ENST00000225726 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.27
CCDC47-201ENST00000225726 ZCCHC6Q5VYS8 1495 aaKnown RBP28.18■■■□□ 2.1
CCDC47-201ENST00000225726 DCAF1Q9Y4B6 1507 aa27.73■■■□□ 2.03
CCDC47-201ENST00000225726 DCAF8L2P0C7V8 631 aa27.53■■■□□ 2
CCDC47-201ENST00000225726 ABCC9O60706 1549 aa27.42■■□□□ 1.98
CCDC47-201ENST00000225726 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
CCDC47-201ENST00000225726 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
CCDC47-201ENST00000225726 NACADO15069 1562 aa27.14■■□□□ 1.94
CCDC47-201ENST00000225726 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
CCDC47-201ENST00000225726 SCRIBQ14160 1630 aa26.83■■□□□ 1.89
CCDC47-201ENST00000225726 SUPT5HO00267 1087 aaKnown RBP26.37■■□□□ 1.81
CCDC47-201ENST00000225726 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
CCDC47-201ENST00000225726 BICRAQ9NZM4 1560 aa26.06■■□□□ 1.76
CCDC47-201ENST00000225726 RSF1Q96T23 1441 aaPredicted RBP26.02■■□□□ 1.76
CCDC47-201ENST00000225726 CECR2Q9BXF3 1484 aa25.99■■□□□ 1.75
CCDC47-201ENST00000225726 MROH2BQ7Z745 1585 aa25.88■■□□□ 1.73
CCDC47-201ENST00000225726 BAZ1AQ9NRL2 1556 aaPredicted RBP25.87■■□□□ 1.73
CCDC47-201ENST00000225726 PABPN1Q86U42 306 aaKnown RBP eCLIP25.85■■□□□ 1.73
CCDC47-201ENST00000225726 SMARCA4P51532 1647 aa25.74■■□□□ 1.71
CCDC47-201ENST00000225726 WIZO95785 1651 aa25.69■■□□□ 1.7
CCDC47-201ENST00000225726 TOP2AP11388 1531 aaKnown RBP25.44■■□□□ 1.66
CCDC47-201ENST00000225726 PEG3Q9GZU2 1588 aa25.43■■□□□ 1.66
CCDC47-201ENST00000225726 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
CCDC47-201ENST00000225726 SMARCA2P51531 1590 aa25.28■■□□□ 1.64
CCDC47-201ENST00000225726 ATAD2BQ9ULI0 1458 aa25.26■■□□□ 1.63
CCDC47-201ENST00000225726 EIF4G1Q04637 1599 aaKnown RBP25.25■■□□□ 1.63
CCDC47-201ENST00000225726 CCDC88BA6NC98 1476 aa25.15■■□□□ 1.62
CCDC47-201ENST00000225726 BAZ1BQ9UIG0 1483 aaKnown RBP25.13■■□□□ 1.61
CCDC47-201ENST00000225726 HMGXB3Q12766 1538 aa25.03■■□□□ 1.6
CCDC47-201ENST00000225726 NCAPD3P42695 1498 aa25.03■■□□□ 1.6
CCDC47-201ENST00000225726 CC2D2AQ9P2K1 1620 aa24.85■■□□□ 1.57
CCDC47-201ENST00000225726 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
CCDC47-201ENST00000225726 ABCC8Q09428 1581 aa24.66■■□□□ 1.54
CCDC47-201ENST00000225726 CFTRP13569 1480 aa24.51■■□□□ 1.51
CCDC47-201ENST00000225726 WRNQ14191 1432 aaPredicted RBP eCLIP24.49■■□□□ 1.51
CCDC47-201ENST00000225726 PRDM2Q13029 1718 aa24.46■■□□□ 1.51
CCDC47-201ENST00000225726 SYNJ1O43426 1573 aa24.4■■□□□ 1.5
CCDC47-201ENST00000225726 CADPSQ9ULU8 1353 aa24.38■■□□□ 1.49
CCDC47-201ENST00000225726 LOC105371045A0A1W2PR82 267 aa24.35■■□□□ 1.49
CCDC47-201ENST00000225726 FAM9AQ8IZU1 332 aaPredicted RBP24.33■■□□□ 1.49
CCDC47-201ENST00000225726 TOP2BQ02880 1626 aa24.31■■□□□ 1.48
CCDC47-201ENST00000225726 BIVM-ERCC5R4GMW8 1640 aa24.3■■□□□ 1.48
CCDC47-201ENST00000225726 EEA1Q15075 1411 aa24.24■■□□□ 1.47
CCDC47-201ENST00000225726 SOGA1O94964 1423 aa24.21■■□□□ 1.47
CCDC47-201ENST00000225726 CUX1P39880 1505 aa24.2■■□□□ 1.46
CCDC47-201ENST00000225726 LAMC3Q9Y6N6 1575 aa24.18■■□□□ 1.46
CCDC47-201ENST00000225726 FANCD2Q9BXW9 1451 aa24.13■■□□□ 1.45
CCDC47-201ENST00000225726 NESP48681 1621 aa24.12■■□□□ 1.45
CCDC47-201ENST00000225726 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
CCDC47-201ENST00000225726 DNAJC5BQ9UF47 199 aa24.1■■□□□ 1.45
CCDC47-201ENST00000225726 CSRNP3Q8WYN3 585 aa24.04■■□□□ 1.44
CCDC47-201ENST00000225726 CEP164Q9UPV0 1460 aa23.97■■□□□ 1.43
CCDC47-201ENST00000225726 EHMT2Q96KQ7 1210 aa23.96■■□□□ 1.43
CCDC47-201ENST00000225726 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
CCDC47-201ENST00000225726 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
CCDC47-201ENST00000225726 KIF21BO75037 1637 aa23.93■■□□□ 1.42
CCDC47-201ENST00000225726 FGD5Q6ZNL6 1462 aa23.91■■□□□ 1.42
CCDC47-201ENST00000225726 GOLGA3Q08378 1498 aa23.9■■□□□ 1.42
CCDC47-201ENST00000225726 TOPBP1Q92547 1522 aa23.89■■□□□ 1.41
CCDC47-201ENST00000225726 KIF21AQ7Z4S6 1674 aa23.87■■□□□ 1.41
CCDC47-201ENST00000225726 KIF27Q86VH2 1401 aa23.86■■□□□ 1.41
CCDC47-201ENST00000225726 TNIKQ9UKE5 1360 aa23.84■■□□□ 1.41
CCDC47-201ENST00000225726 URB2Q14146 1524 aaKnown RBP23.82■■□□□ 1.4
CCDC47-201ENST00000225726 POLA1P09884 1462 aaPredicted RBP23.77■■□□□ 1.4
CCDC47-201ENST00000225726 CUX2O14529 1486 aa23.77■■□□□ 1.4
CCDC47-201ENST00000225726 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
CCDC47-201ENST00000225726 PRXQ9BXM0 1461 aa23.74■■□□□ 1.39
CCDC47-201ENST00000225726 UBTFP17480 764 aaKnown RBP23.73■■□□□ 1.39
CCDC47-201ENST00000225726 RAPGEF2Q9Y4G8 1499 aa23.72■■□□□ 1.39
CCDC47-201ENST00000225726 CEP162Q5TB80 1403 aa23.72■■□□□ 1.39
CCDC47-201ENST00000225726 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
CCDC47-201ENST00000225726 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
CCDC47-201ENST00000225726 MRC2Q9UBG0 1479 aa23.67■■□□□ 1.38
CCDC47-201ENST00000225726 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
CCDC47-201ENST00000225726 IGF1RP08069 1367 aa23.63■■□□□ 1.37
CCDC47-201ENST00000225726 WDR62O43379 1518 aa23.54■■□□□ 1.36
CCDC47-201ENST00000225726 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
CCDC47-201ENST00000225726 ABCA5Q8WWZ7 1642 aa23.53■■□□□ 1.36
CCDC47-201ENST00000225726 CARMIL1Q5VZK9 1371 aa23.51■■□□□ 1.35
CCDC47-201ENST00000225726 ERCC6Q03468 1493 aa23.51■■□□□ 1.35
CCDC47-201ENST00000225726 CLIP1P30622 1438 aa23.5■■□□□ 1.35
CCDC47-201ENST00000225726 CUL7Q14999 1698 aa23.49■■□□□ 1.35
CCDC47-201ENST00000225726 THOC2Q8NI27 1593 aaKnown RBP23.45■■□□□ 1.34
CCDC47-201ENST00000225726 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
CCDC47-201ENST00000225726 TDRD9Q8NDG6 1382 aaKnown RBP23.42■■□□□ 1.34
CCDC47-201ENST00000225726 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
CCDC47-201ENST00000225726 TRIM26Q12899 539 aaPredicted RBP23.38■■□□□ 1.33
CCDC47-201ENST00000225726 PCGF6Q9BYE7 350 aa23.36■■□□□ 1.33
CCDC47-201ENST00000225726 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
CCDC47-201ENST00000225726 VPS8Q8N3P4 1428 aa23.32■■□□□ 1.32
CCDC47-201ENST00000225726 RANGAP1P46060 587 aaPredicted RBP23.28■■□□□ 1.32
CCDC47-201ENST00000225726 ARAP1Q96P48 1450 aa23.28■■□□□ 1.32
CCDC47-201ENST00000225726 AQRO60306 1485 aaKnown RBP eCLIP23.26■■□□□ 1.311e-7■■■■□ 23.2
CCDC47-201ENST00000225726 CTTNBP2Q8WZ74 1663 aa23.26■■□□□ 1.31
CCDC47-201ENST00000225726 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
CCDC47-201ENST00000225726 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
CCDC47-201ENST00000225726 ZNF608Q9ULD9 1512 aaPredicted RBP23.23■■□□□ 1.31
CCDC47-201ENST00000225726 ADAMTS12P58397 1594 aa23.21■■□□□ 1.31
CCDC47-201ENST00000225726 FHAD1B1AJZ9 1412 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms