RNA–Protein interactions for RNA: ENST00000224807.9

SFXN3-201, Transcript of sideroflexin 3, humanhuman

TSL 5 BASIC

Gene SFXN3, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN3-201ENST00000224807 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
SFXN3-201ENST00000224807 SHROOM4Q9ULL8 1493 aa24.74■■□□□ 1.55
SFXN3-201ENST00000224807 SUPT5HO00267 1087 aaKnown RBP24.63■■□□□ 1.53
SFXN3-201ENST00000224807 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.45
SFXN3-201ENST00000224807 PPARGC1BQ86YN6 1023 aaKnown RBP24.12■■□□□ 1.45
SFXN3-201ENST00000224807 HRCP23327 699 aa23.99■■□□□ 1.43
SFXN3-201ENST00000224807 DCAF8L2P0C7V8 631 aa23.81■■□□□ 1.4
SFXN3-201ENST00000224807 CHIC1Q5VXU3 224 aa23.56■■□□□ 1.36
SFXN3-201ENST00000224807 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
SFXN3-201ENST00000224807 ZCCHC6Q5VYS8 1495 aaKnown RBP23.51■■□□□ 1.35
SFXN3-201ENST00000224807 LOC105371045A0A1W2PR82 267 aa23.47■■□□□ 1.35
SFXN3-201ENST00000224807 EHMT2Q96KQ7 1210 aa23.34■■□□□ 1.33
SFXN3-201ENST00000224807 CCDC180Q9P1Z9 1646 aa23.25■■□□□ 1.31
SFXN3-201ENST00000224807 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
SFXN3-201ENST00000224807 TRIM26Q12899 539 aaPredicted RBP22.89■■□□□ 1.25
SFXN3-201ENST00000224807 DCAF1Q9Y4B6 1507 aa22.82■■□□□ 1.24
SFXN3-201ENST00000224807 SCAF1Q9H7N4 1312 aaKnown RBP22.81■■□□□ 1.24
SFXN3-201ENST00000224807 TTBK1Q5TCY1 1321 aaPredicted RBP22.65■■□□□ 1.22
SFXN3-201ENST00000224807 PELP1Q8IZL8 1130 aaKnown RBP22.59■■□□□ 1.21
SFXN3-201ENST00000224807 TRIM41Q8WV44 630 aa22.46■■□□□ 1.19
SFXN3-201ENST00000224807 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.44■■□□□ 1.18
SFXN3-201ENST00000224807 ZEB1P37275 1124 aaPredicted RBP22.44■■□□□ 1.18
SFXN3-201ENST00000224807 NEUROD1Q13562 356 aa22.34■■□□□ 1.17
SFXN3-201ENST00000224807 CCER1Q8TC90 406 aaPredicted RBP22.33■■□□□ 1.16
SFXN3-201ENST00000224807 GTF3C3Q9Y5Q9 886 aa22.28■■□□□ 1.16
SFXN3-201ENST00000224807 ABCC9O60706 1549 aa22.28■■□□□ 1.16
SFXN3-201ENST00000224807 YTHDC1Q96MU7 727 aaKnown RBP22.27■■□□□ 1.16
SFXN3-201ENST00000224807 ACIN1Q9UKV3 1341 aaKnown RBP22.18■■□□□ 1.14
SFXN3-201ENST00000224807 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
SFXN3-201ENST00000224807 DIEXFQ68CQ4 756 aaKnown RBP22.08■■□□□ 1.12
SFXN3-201ENST00000224807 CENPBP07199 599 aaPredicted RBP22.01■■□□□ 1.11
SFXN3-201ENST00000224807 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
SFXN3-201ENST00000224807 SCRIBQ14160 1630 aa22■■□□□ 1.11
SFXN3-201ENST00000224807 RANGAP1P46060 587 aaPredicted RBP21.66■■□□□ 1.06
SFXN3-201ENST00000224807 CECR2Q9BXF3 1484 aa21.65■■□□□ 1.06
SFXN3-201ENST00000224807 HNRNPUL2Q1KMD3 747 aaKnown RBP21.64■■□□□ 1.05
SFXN3-201ENST00000224807 MROH2BQ7Z745 1585 aa21.6■■□□□ 1.05
SFXN3-201ENST00000224807 MIER1Q8N108 512 aa21.57■■□□□ 1.04
SFXN3-201ENST00000224807 UBTFP17480 764 aaKnown RBP21.54■■□□□ 1.04
SFXN3-201ENST00000224807 ZNF316A6NFI3 1004 aaPredicted RBP21.52■■□□□ 1.04
SFXN3-201ENST00000224807 WIZO95785 1651 aa21.52■■□□□ 1.04
SFXN3-201ENST00000224807 MYT1Q01538 1121 aa21.49■■□□□ 1.03
SFXN3-201ENST00000224807 EIF4G1Q04637 1599 aaKnown RBP21.41■■□□□ 1.02
SFXN3-201ENST00000224807 NACADO15069 1562 aa21.4■■□□□ 1.02
SFXN3-201ENST00000224807 BAZ1AQ9NRL2 1556 aaPredicted RBP21.37■■□□□ 1.01
SFXN3-201ENST00000224807 WRNQ14191 1432 aaPredicted RBP eCLIP21.28■■□□□ 1
SFXN3-201ENST00000224807 BCANQ96GW7 911 aa21.25■□□□□ 0.99
SFXN3-201ENST00000224807 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SFXN3-201ENST00000224807 CCDC88BA6NC98 1476 aa21.22■□□□□ 0.99
SFXN3-201ENST00000224807 CEP162Q5TB80 1403 aa21.21■□□□□ 0.99
SFXN3-201ENST00000224807 TOP2AP11388 1531 aaKnown RBP21.12■□□□□ 0.97
SFXN3-201ENST00000224807 SOGA1O94964 1423 aa21.12■□□□□ 0.97
SFXN3-201ENST00000224807 APLP2Q06481 763 aa21.11■□□□□ 0.97
SFXN3-201ENST00000224807 TNIKQ9UKE5 1360 aa21.11■□□□□ 0.97
SFXN3-201ENST00000224807 ITGAEP38570 1179 aa21.06■□□□□ 0.96
SFXN3-201ENST00000224807 SMARCA2P51531 1590 aa21.05■□□□□ 0.96
SFXN3-201ENST00000224807 SUPT16HQ9Y5B9 1047 aaKnown RBP21.03■□□□□ 0.96
SFXN3-201ENST00000224807 RUSC2Q8N2Y8 1516 aa21.01■□□□□ 0.95
SFXN3-201ENST00000224807 CSRNP3Q8WYN3 585 aa21.01■□□□□ 0.95
SFXN3-201ENST00000224807 SMARCA4P51532 1647 aa21■□□□□ 0.95
SFXN3-201ENST00000224807 EEA1Q15075 1411 aa20.97■□□□□ 0.95
SFXN3-201ENST00000224807 KCNH8Q96L42 1107 aa20.93■□□□□ 0.94
SFXN3-201ENST00000224807 GOLGA3Q08378 1498 aa20.9■□□□□ 0.94
SFXN3-201ENST00000224807 TSHZ2Q9NRE2 1034 aa20.88■□□□□ 0.93
SFXN3-201ENST00000224807 FKBP8Q14318 412 aa20.79■□□□□ 0.92
SFXN3-201ENST00000224807 HIRIP3Q9BW71 556 aaPredicted RBP20.78■□□□□ 0.92
SFXN3-201ENST00000224807 ANP32EQ9BTT0 268 aa20.77■□□□□ 0.92
SFXN3-201ENST00000224807 BCL11AQ9H165 835 aa20.77■□□□□ 0.92
SFXN3-201ENST00000224807 UNC13AQ9UPW8 1703 aa20.75■□□□□ 0.91
SFXN3-201ENST00000224807 CEP164Q9UPV0 1460 aa20.72■□□□□ 0.91
SFXN3-201ENST00000224807 CLIP1P30622 1438 aa20.7■□□□□ 0.91
SFXN3-201ENST00000224807 KIF21BO75037 1637 aa20.7■□□□□ 0.9
SFXN3-201ENST00000224807 TRIM52Q96A61 297 aa20.69■□□□□ 0.9
SFXN3-201ENST00000224807 SYNJ1O43426 1573 aa20.67■□□□□ 0.9
SFXN3-201ENST00000224807 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
SFXN3-201ENST00000224807 VPS8Q8N3P4 1428 aa20.67■□□□□ 0.9
SFXN3-201ENST00000224807 DDX10Q13206 875 aaKnown RBP20.66■□□□□ 0.9
SFXN3-201ENST00000224807 NEFLP07196 543 aa20.58■□□□□ 0.88
SFXN3-201ENST00000224807 IRX6P78412 446 aaPredicted RBP20.58■□□□□ 0.88
SFXN3-201ENST00000224807 RAPGEF2Q9Y4G8 1499 aa20.57■□□□□ 0.88
SFXN3-201ENST00000224807 BAZ1BQ9UIG0 1483 aaKnown RBP20.56■□□□□ 0.88
SFXN3-201ENST00000224807 KANK4Q5T7N3 995 aaPredicted RBP20.56■□□□□ 0.88
SFXN3-201ENST00000224807 ATP1B4Q9UN42 357 aaPredicted RBP20.56■□□□□ 0.88
SFXN3-201ENST00000224807 PEG3Q9GZU2 1588 aa20.52■□□□□ 0.88
SFXN3-201ENST00000224807 RBM19Q9Y4C8 960 aaKnown RBP20.47■□□□□ 0.87
SFXN3-201ENST00000224807 DHX57Q6P158 1386 aaKnown RBP20.47■□□□□ 0.87
SFXN3-201ENST00000224807 BICRAQ9NZM4 1560 aa20.46■□□□□ 0.87
SFXN3-201ENST00000224807 SIN3AQ96ST3 1273 aa20.45■□□□□ 0.86
SFXN3-201ENST00000224807 ERICH6Q7L0X2 663 aa20.44■□□□□ 0.86
SFXN3-201ENST00000224807 CLSPNQ9HAW4 1339 aa20.44■□□□□ 0.86
SFXN3-201ENST00000224807 CNGB1Q14028 1251 aaPredicted RBP20.4■□□□□ 0.86
SFXN3-201ENST00000224807 FAM50AQ14320 339 aaKnown RBP20.38■□□□□ 0.85
SFXN3-201ENST00000224807 ATAD2BQ9ULI0 1458 aa20.35■□□□□ 0.85
SFXN3-201ENST00000224807 ARAP1Q96P48 1450 aa20.34■□□□□ 0.85
SFXN3-201ENST00000224807 TOP2BQ02880 1626 aa20.33■□□□□ 0.84
SFXN3-201ENST00000224807 P3H3Q8IVL6 736 aa20.29■□□□□ 0.84
SFXN3-201ENST00000224807 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.84
SFXN3-201ENST00000224807 SENP3-EIF4A1A0A087X0R7 540 aa20.27■□□□□ 0.84
SFXN3-201ENST00000224807 PRXQ9BXM0 1461 aa20.27■□□□□ 0.84
SFXN3-201ENST00000224807 RRBP1Q9P2E9 1410 aaKnown RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms