RNA–Protein interactions for RNA: ENST00000588210.1

CCDC43-203, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC43, Length 2,067 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-203ENST00000588210 NISCHQ9Y2I1 1504 aa33.85■■■■□ 3.01
CCDC43-203ENST00000588210 CCDC180Q9P1Z9 1646 aa30.01■■■□□ 2.39
CCDC43-203ENST00000588210 ABCC9O60706 1549 aa29.15■■■□□ 2.26
CCDC43-203ENST00000588210 ZCCHC6Q5VYS8 1495 aaKnown RBP28.24■■■□□ 2.11
CCDC43-203ENST00000588210 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
CCDC43-203ENST00000588210 NACADO15069 1562 aa28.18■■■□□ 2.1
CCDC43-203ENST00000588210 RB1CC1Q8TDY2 1594 aa28.15■■■□□ 2.1
CCDC43-203ENST00000588210 MYO15BQ96JP2 1530 aa28.1■■■□□ 2.09
CCDC43-203ENST00000588210 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
CCDC43-203ENST00000588210 UNC13AQ9UPW8 1703 aa27.49■■□□□ 1.99
CCDC43-203ENST00000588210 SCRIBQ14160 1630 aa27.36■■□□□ 1.97
CCDC43-203ENST00000588210 PABPN1Q86U42 306 aaKnown RBP eCLIP27.28■■□□□ 1.96
CCDC43-203ENST00000588210 BICRAQ9NZM4 1560 aa27.27■■□□□ 1.96
CCDC43-203ENST00000588210 SHROOM4Q9ULL8 1493 aa27.05■■□□□ 1.92
CCDC43-203ENST00000588210 DNAJC5BQ9UF47 199 aa26.58■■□□□ 1.84
CCDC43-203ENST00000588210 EIF4G1Q04637 1599 aaKnown RBP26.55■■□□□ 1.84
CCDC43-203ENST00000588210 CC2D2AQ9P2K1 1620 aa26.39■■□□□ 1.81
CCDC43-203ENST00000588210 CECR2Q9BXF3 1484 aa26.33■■□□□ 1.81
CCDC43-203ENST00000588210 BAZ1AQ9NRL2 1556 aaPredicted RBP26.23■■□□□ 1.79
CCDC43-203ENST00000588210 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
CCDC43-203ENST00000588210 MROH2BQ7Z745 1585 aa26.07■■□□□ 1.76
CCDC43-203ENST00000588210 ATAD2BQ9ULI0 1458 aa26.03■■□□□ 1.76
CCDC43-203ENST00000588210 SMARCA2P51531 1590 aa26.02■■□□□ 1.76
CCDC43-203ENST00000588210 NCAPD3P42695 1498 aa26■■□□□ 1.75
CCDC43-203ENST00000588210 PEG3Q9GZU2 1588 aa25.98■■□□□ 1.75
CCDC43-203ENST00000588210 HMGXB3Q12766 1538 aa25.88■■□□□ 1.73
CCDC43-203ENST00000588210 RSF1Q96T23 1441 aaPredicted RBP25.87■■□□□ 1.73
CCDC43-203ENST00000588210 BAZ1BQ9UIG0 1483 aaKnown RBP25.83■■□□□ 1.73
CCDC43-203ENST00000588210 WIZO95785 1651 aa25.8■■□□□ 1.72
CCDC43-203ENST00000588210 TOP2AP11388 1531 aaKnown RBP25.55■■□□□ 1.68
CCDC43-203ENST00000588210 SUPT5HO00267 1087 aaKnown RBP25.35■■□□□ 1.65
CCDC43-203ENST00000588210 LAMC3Q9Y6N6 1575 aa25.28■■□□□ 1.64
CCDC43-203ENST00000588210 NESP48681 1621 aa25.28■■□□□ 1.64
CCDC43-203ENST00000588210 CADPSQ9ULU8 1353 aa25.26■■□□□ 1.63
CCDC43-203ENST00000588210 CCDC88BA6NC98 1476 aa25.26■■□□□ 1.63
CCDC43-203ENST00000588210 CFTRP13569 1480 aa25.14■■□□□ 1.62
CCDC43-203ENST00000588210 ERCC6Q03468 1493 aa25.13■■□□□ 1.61
CCDC43-203ENST00000588210 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
CCDC43-203ENST00000588210 KIF21AQ7Z4S6 1674 aa24.98■■□□□ 1.59
CCDC43-203ENST00000588210 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.59
CCDC43-203ENST00000588210 PRDM2Q13029 1718 aa24.95■■□□□ 1.58
CCDC43-203ENST00000588210 CEP164Q9UPV0 1460 aa24.91■■□□□ 1.58
CCDC43-203ENST00000588210 THOC2Q8NI27 1593 aaKnown RBP24.86■■□□□ 1.57
CCDC43-203ENST00000588210 MRC2Q9UBG0 1479 aa24.82■■□□□ 1.56
CCDC43-203ENST00000588210 CUX2O14529 1486 aa24.8■■□□□ 1.56
CCDC43-203ENST00000588210 WDR62O43379 1518 aa24.74■■□□□ 1.55
CCDC43-203ENST00000588210 URB2Q14146 1524 aaKnown RBP24.67■■□□□ 1.54
CCDC43-203ENST00000588210 ABCC8Q09428 1581 aa24.62■■□□□ 1.53
CCDC43-203ENST00000588210 TOPBP1Q92547 1522 aa24.57■■□□□ 1.52
CCDC43-203ENST00000588210 DNMBPQ6XZF7 1577 aa24.56■■□□□ 1.52
CCDC43-203ENST00000588210 CUX1P39880 1505 aa24.45■■□□□ 1.5
CCDC43-203ENST00000588210 WRNQ14191 1432 aaPredicted RBP eCLIP24.39■■□□□ 1.5
CCDC43-203ENST00000588210 IFT140Q96RY7 1462 aa24.38■■□□□ 1.49
CCDC43-203ENST00000588210 POLA1P09884 1462 aaPredicted RBP24.37■■□□□ 1.49
CCDC43-203ENST00000588210 FGD5Q6ZNL6 1462 aa24.34■■□□□ 1.49
CCDC43-203ENST00000588210 TOP2BQ02880 1626 aa24.31■■□□□ 1.48
CCDC43-203ENST00000588210 BIVM-ERCC5R4GMW8 1640 aa24.3■■□□□ 1.48
CCDC43-203ENST00000588210 SOGA1O94964 1423 aa24.29■■□□□ 1.48
CCDC43-203ENST00000588210 SYNJ1O43426 1573 aa24.29■■□□□ 1.48
CCDC43-203ENST00000588210 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
CCDC43-203ENST00000588210 CHIC1Q5VXU3 224 aa24.27■■□□□ 1.48
CCDC43-203ENST00000588210 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
CCDC43-203ENST00000588210 ZNF608Q9ULD9 1512 aaPredicted RBP24.23■■□□□ 1.47
CCDC43-203ENST00000588210 EIF4G3O43432 1585 aaKnown RBP24.14■■□□□ 1.45
CCDC43-203ENST00000588210 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
CCDC43-203ENST00000588210 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
CCDC43-203ENST00000588210 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.45
CCDC43-203ENST00000588210 TDRD9Q8NDG6 1382 aaKnown RBP24.12■■□□□ 1.45
CCDC43-203ENST00000588210 GAPVD1Q14C86 1478 aa24.01■■□□□ 1.43
CCDC43-203ENST00000588210 ABCA5Q8WWZ7 1642 aa24■■□□□ 1.43
CCDC43-203ENST00000588210 GRIN2BQ13224 1484 aa23.99■■□□□ 1.43
CCDC43-203ENST00000588210 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
CCDC43-203ENST00000588210 PBRM1Q86U86 1689 aa23.92■■□□□ 1.42
CCDC43-203ENST00000588210 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
CCDC43-203ENST00000588210 MAGI1Q96QZ7 1491 aaPredicted RBP23.91■■□□□ 1.42
CCDC43-203ENST00000588210 KIF27Q86VH2 1401 aa23.87■■□□□ 1.41
CCDC43-203ENST00000588210 ERICH3Q5RHP9 1530 aa23.85■■□□□ 1.41
CCDC43-203ENST00000588210 OSCARQ8IYS5 282 aa23.83■■□□□ 1.41
CCDC43-203ENST00000588210 FBLN2P98095 1184 aa23.82■■□□□ 1.4
CCDC43-203ENST00000588210 DNAJC5Q9H3Z4 198 aa23.81■■□□□ 1.4
CCDC43-203ENST00000588210 SYNJ2O15056 1496 aa23.81■■□□□ 1.4
CCDC43-203ENST00000588210 CHMP7Q8WUX9 453 aaPredicted RBP23.8■■□□□ 1.4
CCDC43-203ENST00000588210 CHD1O14646 1710 aa23.79■■□□□ 1.4
CCDC43-203ENST00000588210 ADAMTS12P58397 1594 aa23.75■■□□□ 1.39
CCDC43-203ENST00000588210 FHAD1B1AJZ9 1412 aa23.75■■□□□ 1.39
CCDC43-203ENST00000588210 IGF1RP08069 1367 aa23.75■■□□□ 1.39
CCDC43-203ENST00000588210 RUSC2Q8N2Y8 1516 aa23.68■■□□□ 1.38
CCDC43-203ENST00000588210 GRIN2AQ12879 1464 aa23.67■■□□□ 1.38
CCDC43-203ENST00000588210 CUL7Q14999 1698 aa23.67■■□□□ 1.38
CCDC43-203ENST00000588210 HRCP23327 699 aa23.62■■□□□ 1.37
CCDC43-203ENST00000588210 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
CCDC43-203ENST00000588210 EEA1Q15075 1411 aa23.56■■□□□ 1.36
CCDC43-203ENST00000588210 NUP160Q12769 1436 aa23.56■■□□□ 1.36
CCDC43-203ENST00000588210 CLASP1Q7Z460 1538 aa23.55■■□□□ 1.36
CCDC43-203ENST00000588210 CEP170Q5SW79 1584 aa23.53■■□□□ 1.36
CCDC43-203ENST00000588210 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
CCDC43-203ENST00000588210 RAPGEF2Q9Y4G8 1499 aa23.5■■□□□ 1.35
CCDC43-203ENST00000588210 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
CCDC43-203ENST00000588210 PCGF6Q9BYE7 350 aa23.45■■□□□ 1.34
CCDC43-203ENST00000588210 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms