RNA–Protein interactions for RNA: ENST00000395060.5

CLIP2-203, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP2, Length 3,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-203ENST00000395060 NISCHQ9Y2I1 1504 aa28.23■■■□□ 2.11
CLIP2-203ENST00000395060 SHROOM4Q9ULL8 1493 aa24.86■■□□□ 1.57
CLIP2-203ENST00000395060 SUPT5HO00267 1087 aaKnown RBP24.64■■□□□ 1.53
CLIP2-203ENST00000395060 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
CLIP2-203ENST00000395060 PCGF6Q9BYE7 350 aa23.98■■□□□ 1.43
CLIP2-203ENST00000395060 HRCP23327 699 aa23.96■■□□□ 1.43
CLIP2-203ENST00000395060 PPARGC1BQ86YN6 1023 aaKnown RBP23.9■■□□□ 1.42
CLIP2-203ENST00000395060 CCDC180Q9P1Z9 1646 aa23.83■■□□□ 1.4
CLIP2-203ENST00000395060 MYO15BQ96JP2 1530 aa23.81■■□□□ 1.4
CLIP2-203ENST00000395060 ZCCHC6Q5VYS8 1495 aaKnown RBP23.77■■□□□ 1.4
CLIP2-203ENST00000395060 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
CLIP2-203ENST00000395060 LOC105371045A0A1W2PR82 267 aa23.49■■□□□ 1.35
CLIP2-203ENST00000395060 EHMT2Q96KQ7 1210 aa23.11■■□□□ 1.29
CLIP2-203ENST00000395060 TRIM26Q12899 539 aaPredicted RBP22.95■■□□□ 1.26
CLIP2-203ENST00000395060 FAM9AQ8IZU1 332 aaPredicted RBP22.92■■□□□ 1.26
CLIP2-203ENST00000395060 DCAF1Q9Y4B6 1507 aa22.92■■□□□ 1.26
CLIP2-203ENST00000395060 ABCC9O60706 1549 aa22.81■■□□□ 1.24
CLIP2-203ENST00000395060 SCRIBQ14160 1630 aa22.69■■□□□ 1.22
CLIP2-203ENST00000395060 SCAF1Q9H7N4 1312 aaKnown RBP22.63■■□□□ 1.21
CLIP2-203ENST00000395060 TRIM41Q8WV44 630 aa22.6■■□□□ 1.21
CLIP2-203ENST00000395060 ZEB1P37275 1124 aaPredicted RBP22.48■■□□□ 1.19
CLIP2-203ENST00000395060 TTBK1Q5TCY1 1321 aaPredicted RBP22.42■■□□□ 1.18
CLIP2-203ENST00000395060 RSF1Q96T23 1441 aaPredicted RBP22.37■■□□□ 1.17
CLIP2-203ENST00000395060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.36■■□□□ 1.17
CLIP2-203ENST00000395060 PELP1Q8IZL8 1130 aaKnown RBP22.32■■□□□ 1.16
CLIP2-203ENST00000395060 CCER1Q8TC90 406 aaPredicted RBP22.23■■□□□ 1.15
CLIP2-203ENST00000395060 CECR2Q9BXF3 1484 aa22.23■■□□□ 1.15
CLIP2-203ENST00000395060 NACADO15069 1562 aa22.22■■□□□ 1.15
CLIP2-203ENST00000395060 NEUROD1Q13562 356 aa22.18■■□□□ 1.14
CLIP2-203ENST00000395060 RB1CC1Q8TDY2 1594 aa22.08■■□□□ 1.12
CLIP2-203ENST00000395060 ACIN1Q9UKV3 1341 aaKnown RBP22.07■■□□□ 1.12
CLIP2-203ENST00000395060 GTF3C3Q9Y5Q9 886 aa22.06■■□□□ 1.12
CLIP2-203ENST00000395060 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
CLIP2-203ENST00000395060 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
CLIP2-203ENST00000395060 PABPN1Q86U42 306 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLIP2-203ENST00000395060 YTHDC1Q96MU7 727 aaKnown RBP21.96■■□□□ 1.11
CLIP2-203ENST00000395060 WIZO95785 1651 aa21.89■■□□□ 1.09
CLIP2-203ENST00000395060 CENPBP07199 599 aaPredicted RBP21.84■■□□□ 1.09
CLIP2-203ENST00000395060 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
CLIP2-203ENST00000395060 UBTFP17480 764 aaKnown RBP21.6■■□□□ 1.05
CLIP2-203ENST00000395060 HNRNPUL2Q1KMD3 747 aaKnown RBP21.58■■□□□ 1.05
CLIP2-203ENST00000395060 RANGAP1P46060 587 aaPredicted RBP21.55■■□□□ 1.04
CLIP2-203ENST00000395060 UNC13AQ9UPW8 1703 aa21.54■■□□□ 1.04
CLIP2-203ENST00000395060 ZNF316A6NFI3 1004 aaPredicted RBP21.53■■□□□ 1.04
CLIP2-203ENST00000395060 MIER1Q8N108 512 aa21.51■■□□□ 1.03
CLIP2-203ENST00000395060 SMARCA4P51532 1647 aa21.5■■□□□ 1.03
CLIP2-203ENST00000395060 CCDC88BA6NC98 1476 aa21.49■■□□□ 1.03
CLIP2-203ENST00000395060 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
CLIP2-203ENST00000395060 CEP162Q5TB80 1403 aa21.42■■□□□ 1.02
CLIP2-203ENST00000395060 TOP2AP11388 1531 aaKnown RBP21.41■■□□□ 1.02
CLIP2-203ENST00000395060 SOGA1O94964 1423 aa21.39■■□□□ 1.01
CLIP2-203ENST00000395060 BICRAQ9NZM4 1560 aa21.38■■□□□ 1.01
CLIP2-203ENST00000395060 SMARCA2P51531 1590 aa21.33■■□□□ 1.01
CLIP2-203ENST00000395060 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
CLIP2-203ENST00000395060 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
CLIP2-203ENST00000395060 EIF4G1Q04637 1599 aaKnown RBP21.24■□□□□ 0.99
CLIP2-203ENST00000395060 MYT1Q01538 1121 aa21.21■□□□□ 0.99
CLIP2-203ENST00000395060 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.98
CLIP2-203ENST00000395060 TNIKQ9UKE5 1360 aa21.15■□□□□ 0.98
CLIP2-203ENST00000395060 APLP2Q06481 763 aa21.13■□□□□ 0.97
CLIP2-203ENST00000395060 ATAD2BQ9ULI0 1458 aa21.1■□□□□ 0.97
CLIP2-203ENST00000395060 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.96
CLIP2-203ENST00000395060 ITGAEP38570 1179 aa20.97■□□□□ 0.95
CLIP2-203ENST00000395060 BCANQ96GW7 911 aa20.95■□□□□ 0.94
CLIP2-203ENST00000395060 SUPT16HQ9Y5B9 1047 aaKnown RBP20.95■□□□□ 0.94
CLIP2-203ENST00000395060 GOLGA3Q08378 1498 aa20.95■□□□□ 0.94
CLIP2-203ENST00000395060 PEG3Q9GZU2 1588 aa20.94■□□□□ 0.94
CLIP2-203ENST00000395060 CLIP1P30622 1438 aa20.92■□□□□ 0.94
CLIP2-203ENST00000395060 KCNH8Q96L42 1107 aa20.88■□□□□ 0.93
CLIP2-203ENST00000395060 SYNJ1O43426 1573 aa20.87■□□□□ 0.93
CLIP2-203ENST00000395060 EEA1Q15075 1411 aa20.82■□□□□ 0.92
CLIP2-203ENST00000395060 KANK4Q5T7N3 995 aaPredicted RBP20.76■□□□□ 0.91
CLIP2-203ENST00000395060 TSHZ2Q9NRE2 1034 aa20.76■□□□□ 0.91
CLIP2-203ENST00000395060 VPS8Q8N3P4 1428 aa20.74■□□□□ 0.91
CLIP2-203ENST00000395060 RAPGEF2Q9Y4G8 1499 aa20.74■□□□□ 0.91
CLIP2-203ENST00000395060 CEP164Q9UPV0 1460 aa20.73■□□□□ 0.91
CLIP2-203ENST00000395060 DHX57Q6P158 1386 aaKnown RBP20.7■□□□□ 0.9
CLIP2-203ENST00000395060 HIRIP3Q9BW71 556 aaPredicted RBP20.67■□□□□ 0.9
CLIP2-203ENST00000395060 NCAPD3P42695 1498 aa20.66■□□□□ 0.9
CLIP2-203ENST00000395060 FKBP8Q14318 412 aa20.63■□□□□ 0.89
CLIP2-203ENST00000395060 DDX10Q13206 875 aaKnown RBP20.6■□□□□ 0.89
CLIP2-203ENST00000395060 ANP32EQ9BTT0 268 aa20.57■□□□□ 0.88
CLIP2-203ENST00000395060 KIF21BO75037 1637 aa20.56■□□□□ 0.88
CLIP2-203ENST00000395060 TRIM52Q96A61 297 aa20.54■□□□□ 0.88
CLIP2-203ENST00000395060 TOP2BQ02880 1626 aa20.53■□□□□ 0.88
CLIP2-203ENST00000395060 HMGXB3Q12766 1538 aa20.52■□□□□ 0.88
CLIP2-203ENST00000395060 SIN3AQ96ST3 1273 aa20.5■□□□□ 0.87
CLIP2-203ENST00000395060 ATP1B4Q9UN42 357 aaPredicted RBP20.5■□□□□ 0.87
CLIP2-203ENST00000395060 CUX1P39880 1505 aa20.49■□□□□ 0.87
CLIP2-203ENST00000395060 CFTRP13569 1480 aa20.46■□□□□ 0.87
CLIP2-203ENST00000395060 CLSPNQ9HAW4 1339 aa20.44■□□□□ 0.86
CLIP2-203ENST00000395060 FAM50AQ14320 339 aaKnown RBP20.42■□□□□ 0.86
CLIP2-203ENST00000395060 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
CLIP2-203ENST00000395060 BCL11AQ9H165 835 aa20.4■□□□□ 0.86
CLIP2-203ENST00000395060 NEFLP07196 543 aa20.38■□□□□ 0.85
CLIP2-203ENST00000395060 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
CLIP2-203ENST00000395060 P3H3Q8IVL6 736 aa20.37■□□□□ 0.85
CLIP2-203ENST00000395060 IRX6P78412 446 aaPredicted RBP20.37■□□□□ 0.85
CLIP2-203ENST00000395060 ARAP1Q96P48 1450 aa20.37■□□□□ 0.85
CLIP2-203ENST00000395060 BIVM-ERCC5R4GMW8 1640 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms