RNA–Protein interactions for RNA: ENST00000253251.12

UBE4B-201, Transcript of ubiquitination factor E4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE4B, Length 4,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-201ENST00000253251 NISCHQ9Y2I1 1504 aa27.72■■■□□ 2.03
UBE4B-201ENST00000253251 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
UBE4B-201ENST00000253251 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
UBE4B-201ENST00000253251 SHROOM4Q9ULL8 1493 aa25.06■■□□□ 1.6
UBE4B-201ENST00000253251 APLP2Q06481 763 aa23.69■■□□□ 1.38
UBE4B-201ENST00000253251 TRIM41Q8WV44 630 aa23.61■■□□□ 1.37
UBE4B-201ENST00000253251 EHMT2Q96KQ7 1210 aa23.61■■□□□ 1.37
UBE4B-201ENST00000253251 FAM9AQ8IZU1 332 aaPredicted RBP23.57■■□□□ 1.36
UBE4B-201ENST00000253251 ABCC9O60706 1549 aa23.45■■□□□ 1.34
UBE4B-201ENST00000253251 CCDC180Q9P1Z9 1646 aa23.28■■□□□ 1.32
UBE4B-201ENST00000253251 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
UBE4B-201ENST00000253251 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
UBE4B-201ENST00000253251 PCGF6Q9BYE7 350 aa22.93■■□□□ 1.26
UBE4B-201ENST00000253251 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
UBE4B-201ENST00000253251 ZEB1P37275 1124 aaPredicted RBP22.89■■□□□ 1.25
UBE4B-201ENST00000253251 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
UBE4B-201ENST00000253251 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.25
UBE4B-201ENST00000253251 TTBK1Q5TCY1 1321 aaPredicted RBP22.79■■□□□ 1.24
UBE4B-201ENST00000253251 ATP1B4Q9UN42 357 aaPredicted RBP22.77■■□□□ 1.24
UBE4B-201ENST00000253251 CCER1Q8TC90 406 aaPredicted RBP22.6■■□□□ 1.21
UBE4B-201ENST00000253251 SCRIBQ14160 1630 aa22.55■■□□□ 1.2
UBE4B-201ENST00000253251 TRIM26Q12899 539 aaPredicted RBP22.53■■□□□ 1.2
UBE4B-201ENST00000253251 RB1CC1Q8TDY2 1594 aa22.49■■□□□ 1.19
UBE4B-201ENST00000253251 PELP1Q8IZL8 1130 aaKnown RBP22.49■■□□□ 1.19
UBE4B-201ENST00000253251 NACADO15069 1562 aa22.43■■□□□ 1.18
UBE4B-201ENST00000253251 LOC105371045A0A1W2PR82 267 aa22.4■■□□□ 1.18
UBE4B-201ENST00000253251 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
UBE4B-201ENST00000253251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.2■■□□□ 1.14
UBE4B-201ENST00000253251 HNRNPUL2Q1KMD3 747 aaKnown RBP22.2■■□□□ 1.14
UBE4B-201ENST00000253251 PPARGC1BQ86YN6 1023 aaKnown RBP22.19■■□□□ 1.14
UBE4B-201ENST00000253251 CENPBP07199 599 aaPredicted RBP22.13■■□□□ 1.13
UBE4B-201ENST00000253251 CSRNP3Q8WYN3 585 aa22.05■■□□□ 1.12
UBE4B-201ENST00000253251 ITGAEP38570 1179 aa21.97■■□□□ 1.11
UBE4B-201ENST00000253251 HRCP23327 699 aa21.95■■□□□ 1.11
UBE4B-201ENST00000253251 RSF1Q96T23 1441 aaPredicted RBP21.93■■□□□ 1.1
UBE4B-201ENST00000253251 MYT1LQ9UL68 1186 aa21.88■■□□□ 1.09
UBE4B-201ENST00000253251 MYO15BQ96JP2 1530 aa21.87■■□□□ 1.09
UBE4B-201ENST00000253251 BAZ1AQ9NRL2 1556 aaPredicted RBP21.8■■□□□ 1.08
UBE4B-201ENST00000253251 FAM50AQ14320 339 aaKnown RBP21.74■■□□□ 1.07
UBE4B-201ENST00000253251 BAZ1BQ9UIG0 1483 aaKnown RBP21.72■■□□□ 1.07
UBE4B-201ENST00000253251 FBLN2P98095 1184 aa21.72■■□□□ 1.07
UBE4B-201ENST00000253251 EEA1Q15075 1411 aa21.67■■□□□ 1.06
UBE4B-201ENST00000253251 NEFLP07196 543 aa21.61■■□□□ 1.05
UBE4B-201ENST00000253251 CDK11AQ9UQ88 783 aaPredicted RBP21.6■■□□□ 1.05
UBE4B-201ENST00000253251 TRIM52Q96A61 297 aa21.52■■□□□ 1.03
UBE4B-201ENST00000253251 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
UBE4B-201ENST00000253251 CECR2Q9BXF3 1484 aa21.49■■□□□ 1.03
UBE4B-201ENST00000253251 P3H3Q8IVL6 736 aa21.48■■□□□ 1.03
UBE4B-201ENST00000253251 YTHDC1Q96MU7 727 aaKnown RBP21.43■■□□□ 1.02
UBE4B-201ENST00000253251 SMARCA2P51531 1590 aa21.39■■□□□ 1.01
UBE4B-201ENST00000253251 POLR3GLQ9BT43 218 aa21.37■■□□□ 1.01
UBE4B-201ENST00000253251 GOLGA3Q08378 1498 aa21.36■■□□□ 1.01
UBE4B-201ENST00000253251 KIF27Q86VH2 1401 aa21.34■■□□□ 1.01
UBE4B-201ENST00000253251 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
UBE4B-201ENST00000253251 CLIP1P30622 1438 aa21.31■■□□□ 1
UBE4B-201ENST00000253251 NEUROD1Q13562 356 aa21.26■□□□□ 0.99
UBE4B-201ENST00000253251 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
UBE4B-201ENST00000253251 DIEXFQ68CQ4 756 aaKnown RBP21.26■□□□□ 0.99
UBE4B-201ENST00000253251 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
UBE4B-201ENST00000253251 TNIKQ9UKE5 1360 aa21.2■□□□□ 0.98
UBE4B-201ENST00000253251 NPM1P06748 294 aaKnown RBP eCLIP21.2■□□□□ 0.98
UBE4B-201ENST00000253251 ARID3CA6NKF2 412 aa21.19■□□□□ 0.98
UBE4B-201ENST00000253251 ERICH6Q7L0X2 663 aa21.19■□□□□ 0.98
UBE4B-201ENST00000253251 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
UBE4B-201ENST00000253251 CCDC88BA6NC98 1476 aa21.16■□□□□ 0.98
UBE4B-201ENST00000253251 ZNF777Q9ULD5 760 aaPredicted RBP21.16■□□□□ 0.98
UBE4B-201ENST00000253251 CEP162Q5TB80 1403 aa21.15■□□□□ 0.98
UBE4B-201ENST00000253251 MTUS2Q5JR59 1369 aa21.13■□□□□ 0.97
UBE4B-201ENST00000253251 ACIN1Q9UKV3 1341 aaKnown RBP21.09■□□□□ 0.97
UBE4B-201ENST00000253251 ZNF316A6NFI3 1004 aaPredicted RBP21.09■□□□□ 0.97
UBE4B-201ENST00000253251 ERCC6Q03468 1493 aa21.08■□□□□ 0.97
UBE4B-201ENST00000253251 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
UBE4B-201ENST00000253251 SLC4A1APQ9BWU0 796 aaKnown RBP21.02■□□□□ 0.96
UBE4B-201ENST00000253251 ANP32CO43423 234 aa21.02■□□□□ 0.95
UBE4B-201ENST00000253251 ZNF326Q5BKZ1 582 aaKnown RBP21.01■□□□□ 0.95
UBE4B-201ENST00000253251 SMARCA4P51532 1647 aa21■□□□□ 0.95
UBE4B-201ENST00000253251 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
UBE4B-201ENST00000253251 TSPY4P0CV99 314 aa20.97■□□□□ 0.95
UBE4B-201ENST00000253251 TSPY10P0CW01 314 aa20.97■□□□□ 0.95
UBE4B-201ENST00000253251 WIZO95785 1651 aa20.96■□□□□ 0.95
UBE4B-201ENST00000253251 TONSLQ96HA7 1378 aa20.96■□□□□ 0.95
UBE4B-201ENST00000253251 CUX2O14529 1486 aa20.95■□□□□ 0.94
UBE4B-201ENST00000253251 CARMIL1Q5VZK9 1371 aa20.93■□□□□ 0.94
UBE4B-201ENST00000253251 CNGB1Q14028 1251 aaPredicted RBP20.92■□□□□ 0.94
UBE4B-201ENST00000253251 PLEKHD1A6NEE1 506 aa20.91■□□□□ 0.94
UBE4B-201ENST00000253251 CADPSQ9ULU8 1353 aa20.91■□□□□ 0.94
UBE4B-201ENST00000253251 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
UBE4B-201ENST00000253251 ESF1Q9H501 851 aaKnown RBP20.87■□□□□ 0.93
UBE4B-201ENST00000253251 SOGA1O94964 1423 aa20.85■□□□□ 0.93
UBE4B-201ENST00000253251 MYT1Q01538 1121 aa20.8■□□□□ 0.92
UBE4B-201ENST00000253251 CHIC2Q9UKJ5 165 aa20.79■□□□□ 0.92
UBE4B-201ENST00000253251 ABCC8Q09428 1581 aa20.79■□□□□ 0.92
UBE4B-201ENST00000253251 CFDP1Q9UEE9 299 aaPredicted RBP20.69■□□□□ 0.9
UBE4B-201ENST00000253251 BCANQ96GW7 911 aa20.69■□□□□ 0.9
UBE4B-201ENST00000253251 DAXXQ9UER7 740 aaPredicted RBP20.68■□□□□ 0.9
UBE4B-201ENST00000253251 VPS8Q8N3P4 1428 aa20.68■□□□□ 0.9
UBE4B-201ENST00000253251 NCAPD3P42695 1498 aa20.66■□□□□ 0.9
UBE4B-201ENST00000253251 STAG3Q9UJ98 1225 aa20.66■□□□□ 0.9
UBE4B-201ENST00000253251 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.64■□□□□ 0.893e-6■□□□□ 9.2
UBE4B-201ENST00000253251 CARMIL2Q6F5E8 1435 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms