RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 NISCHQ9Y2I1 1504 aa34.75■■■■□ 3.15
CAPN3-207ENST00000397200 CCDC180Q9P1Z9 1646 aa30.66■■■□□ 2.5
CAPN3-207ENST00000397200 ABCC9O60706 1549 aa29.42■■■□□ 2.3
CAPN3-207ENST00000397200 ZCCHC6Q5VYS8 1495 aaKnown RBP29.08■■■□□ 2.25
CAPN3-207ENST00000397200 DCAF8L2P0C7V8 631 aa28.83■■■□□ 2.21
CAPN3-207ENST00000397200 DCAF1Q9Y4B6 1507 aa28.77■■■□□ 2.2
CAPN3-207ENST00000397200 NACADO15069 1562 aa28.67■■■□□ 2.18
CAPN3-207ENST00000397200 MYO15BQ96JP2 1530 aa28.66■■■□□ 2.18
CAPN3-207ENST00000397200 RB1CC1Q8TDY2 1594 aa28.57■■■□□ 2.16
CAPN3-207ENST00000397200 SCRIBQ14160 1630 aa28.04■■■□□ 2.08
CAPN3-207ENST00000397200 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
CAPN3-207ENST00000397200 SHROOM4Q9ULL8 1493 aa27.85■■■□□ 2.05
CAPN3-207ENST00000397200 BICRAQ9NZM4 1560 aa27.66■■■□□ 2.02
CAPN3-207ENST00000397200 PABPN1Q86U42 306 aaKnown RBP eCLIP27.58■■■□□ 2.01
CAPN3-207ENST00000397200 CECR2Q9BXF3 1484 aa27■■□□□ 1.91
CAPN3-207ENST00000397200 BAZ1AQ9NRL2 1556 aaPredicted RBP26.91■■□□□ 1.9
CAPN3-207ENST00000397200 EIF4G1Q04637 1599 aaKnown RBP26.89■■□□□ 1.9
CAPN3-207ENST00000397200 SMARCA4P51532 1647 aa26.86■■□□□ 1.89
CAPN3-207ENST00000397200 MROH2BQ7Z745 1585 aa26.8■■□□□ 1.88
CAPN3-207ENST00000397200 RSF1Q96T23 1441 aaPredicted RBP26.69■■□□□ 1.86
CAPN3-207ENST00000397200 CC2D2AQ9P2K1 1620 aa26.64■■□□□ 1.86
CAPN3-207ENST00000397200 WIZO95785 1651 aa26.57■■□□□ 1.84
CAPN3-207ENST00000397200 SMARCA2P51531 1590 aa26.56■■□□□ 1.84
CAPN3-207ENST00000397200 PEG3Q9GZU2 1588 aa26.56■■□□□ 1.84
CAPN3-207ENST00000397200 ATAD2BQ9ULI0 1458 aa26.53■■□□□ 1.84
CAPN3-207ENST00000397200 SUPT5HO00267 1087 aaKnown RBP26.5■■□□□ 1.83
CAPN3-207ENST00000397200 DNAJC5BQ9UF47 199 aa26.42■■□□□ 1.82
CAPN3-207ENST00000397200 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
CAPN3-207ENST00000397200 BAZ1BQ9UIG0 1483 aaKnown RBP26.38■■□□□ 1.81
CAPN3-207ENST00000397200 HMGXB3Q12766 1538 aa26.37■■□□□ 1.81
CAPN3-207ENST00000397200 TOP2AP11388 1531 aaKnown RBP26.31■■□□□ 1.8
CAPN3-207ENST00000397200 CCDC88BA6NC98 1476 aa25.98■■□□□ 1.75
CAPN3-207ENST00000397200 CADPSQ9ULU8 1353 aa25.69■■□□□ 1.7
CAPN3-207ENST00000397200 CFTRP13569 1480 aa25.66■■□□□ 1.7
CAPN3-207ENST00000397200 LAMC3Q9Y6N6 1575 aa25.66■■□□□ 1.7
CAPN3-207ENST00000397200 NESP48681 1621 aa25.63■■□□□ 1.69
CAPN3-207ENST00000397200 PRDM2Q13029 1718 aa25.59■■□□□ 1.69
CAPN3-207ENST00000397200 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
CAPN3-207ENST00000397200 FANCD2Q9BXW9 1451 aa25.41■■□□□ 1.66
CAPN3-207ENST00000397200 KIF21AQ7Z4S6 1674 aa25.38■■□□□ 1.65
CAPN3-207ENST00000397200 ERCC6Q03468 1493 aa25.33■■□□□ 1.65
CAPN3-207ENST00000397200 CEP164Q9UPV0 1460 aa25.33■■□□□ 1.65
CAPN3-207ENST00000397200 ABCC8Q09428 1581 aa25.24■■□□□ 1.63
CAPN3-207ENST00000397200 MRC2Q9UBG0 1479 aa25.17■■□□□ 1.62
CAPN3-207ENST00000397200 WRNQ14191 1432 aaPredicted RBP eCLIP25.17■■□□□ 1.62
CAPN3-207ENST00000397200 THOC2Q8NI27 1593 aaKnown RBP25.12■■□□□ 1.61
CAPN3-207ENST00000397200 URB2Q14146 1524 aaKnown RBP25.12■■□□□ 1.61
CAPN3-207ENST00000397200 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
CAPN3-207ENST00000397200 CUX1P39880 1505 aa25.1■■□□□ 1.61
CAPN3-207ENST00000397200 SYNJ1O43426 1573 aa25.09■■□□□ 1.61
CAPN3-207ENST00000397200 TOPBP1Q92547 1522 aa25.07■■□□□ 1.6
CAPN3-207ENST00000397200 TOP2BQ02880 1626 aa25.06■■□□□ 1.6
CAPN3-207ENST00000397200 BIVM-ERCC5R4GMW8 1640 aa25.06■■□□□ 1.6
CAPN3-207ENST00000397200 CHIC1Q5VXU3 224 aa25.06■■□□□ 1.6
CAPN3-207ENST00000397200 WDR62O43379 1518 aa25.06■■□□□ 1.6
CAPN3-207ENST00000397200 TRIM41Q8WV44 630 aa25■■□□□ 1.59
CAPN3-207ENST00000397200 FGD5Q6ZNL6 1462 aa24.93■■□□□ 1.58
CAPN3-207ENST00000397200 POLA1P09884 1462 aaPredicted RBP24.9■■□□□ 1.58
CAPN3-207ENST00000397200 CUX2O14529 1486 aa24.82■■□□□ 1.56
CAPN3-207ENST00000397200 SOGA1O94964 1423 aa24.8■■□□□ 1.56
CAPN3-207ENST00000397200 RAD54L2Q9Y4B4 1467 aa24.79■■□□□ 1.56
CAPN3-207ENST00000397200 IFT140Q96RY7 1462 aa24.77■■□□□ 1.56
CAPN3-207ENST00000397200 TARBP1Q13395 1621 aaKnown RBP24.75■■□□□ 1.55
CAPN3-207ENST00000397200 WDR97A6NE52 1622 aa24.72■■□□□ 1.55
CAPN3-207ENST00000397200 ABCA10Q8WWZ4 1543 aa24.71■■□□□ 1.55
CAPN3-207ENST00000397200 ZNF608Q9ULD9 1512 aaPredicted RBP24.61■■□□□ 1.53
CAPN3-207ENST00000397200 KIF27Q86VH2 1401 aa24.6■■□□□ 1.53
CAPN3-207ENST00000397200 TDRD9Q8NDG6 1382 aaKnown RBP24.59■■□□□ 1.53
CAPN3-207ENST00000397200 ABCA5Q8WWZ7 1642 aa24.58■■□□□ 1.52
CAPN3-207ENST00000397200 EIF4G3O43432 1585 aaKnown RBP24.56■■□□□ 1.52
CAPN3-207ENST00000397200 RUSC2Q8N2Y8 1516 aa24.55■■□□□ 1.52
CAPN3-207ENST00000397200 AQRO60306 1485 aaKnown RBP eCLIP24.55■■□□□ 1.52
CAPN3-207ENST00000397200 GAPVD1Q14C86 1478 aa24.54■■□□□ 1.52
CAPN3-207ENST00000397200 EEA1Q15075 1411 aa24.52■■□□□ 1.52
CAPN3-207ENST00000397200 PBRM1Q86U86 1689 aa24.49■■□□□ 1.51
CAPN3-207ENST00000397200 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
CAPN3-207ENST00000397200 GRIN2BQ13224 1484 aa24.45■■□□□ 1.5
CAPN3-207ENST00000397200 ERICH3Q5RHP9 1530 aa24.44■■□□□ 1.5
CAPN3-207ENST00000397200 IGF1RP08069 1367 aa24.39■■□□□ 1.5
CAPN3-207ENST00000397200 CSRNP3Q8WYN3 585 aa24.39■■□□□ 1.5
CAPN3-207ENST00000397200 CUL7Q14999 1698 aa24.35■■□□□ 1.49
CAPN3-207ENST00000397200 SNAPC4Q5SXM2 1469 aa24.34■■□□□ 1.49
CAPN3-207ENST00000397200 MAGI1Q96QZ7 1491 aaPredicted RBP24.32■■□□□ 1.48
CAPN3-207ENST00000397200 ADAMTS12P58397 1594 aa24.3■■□□□ 1.48
CAPN3-207ENST00000397200 CARMIL1Q5VZK9 1371 aa24.29■■□□□ 1.48
CAPN3-207ENST00000397200 FHAD1B1AJZ9 1412 aa24.27■■□□□ 1.48
CAPN3-207ENST00000397200 PRXQ9BXM0 1461 aa24.26■■□□□ 1.47
CAPN3-207ENST00000397200 KIF21BO75037 1637 aa24.24■■□□□ 1.47
CAPN3-207ENST00000397200 SYNJ2O15056 1496 aa24.22■■□□□ 1.47
CAPN3-207ENST00000397200 RAPGEF2Q9Y4G8 1499 aa24.22■■□□□ 1.47
CAPN3-207ENST00000397200 CHMP7Q8WUX9 453 aaPredicted RBP24.17■■□□□ 1.46
CAPN3-207ENST00000397200 FBLN2P98095 1184 aa24.16■■□□□ 1.46
CAPN3-207ENST00000397200 CHD1O14646 1710 aa24.15■■□□□ 1.46
CAPN3-207ENST00000397200 GOLGA3Q08378 1498 aa24.14■■□□□ 1.46
CAPN3-207ENST00000397200 GRIN2AQ12879 1464 aa24.14■■□□□ 1.45
CAPN3-207ENST00000397200 EHMT2Q96KQ7 1210 aa24.13■■□□□ 1.45
CAPN3-207ENST00000397200 LOC105371045A0A1W2PR82 267 aa24.04■■□□□ 1.44
CAPN3-207ENST00000397200 UBTFP17480 764 aaKnown RBP24.03■■□□□ 1.44
CAPN3-207ENST00000397200 CTTNBP2Q8WZ74 1663 aa24■■□□□ 1.43
CAPN3-207ENST00000397200 CEP170Q5SW79 1584 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms