Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDC42EP4Q9H3Q1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDC42EP4Q9H3Q1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDC42EP4Q9H3Q1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDC42EP4Q9H3Q1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 AC060814.1-201ENST00000554326 538 ntBASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDC42EP4Q9H3Q1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 SMPD5-203ENST00000639008 1464 ntBASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDC42EP4Q9H3Q1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.74■■□□□ 1.39
CDC42EP4Q9H3Q1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
CDC42EP4Q9H3Q1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 AC016575.1-201ENST00000607026 382 ntBASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CDC42EP4Q9H3Q1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
CDC42EP4Q9H3Q1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.71■■□□□ 1.39
CDC42EP4Q9H3Q1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
CDC42EP4Q9H3Q1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CDC42EP4Q9H3Q1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CDC42EP4Q9H3Q1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.7■■□□□ 1.38
CDC42EP4Q9H3Q1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CDC42EP4Q9H3Q1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CDC42EP4Q9H3Q1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 AC092296.2-201ENST00000589470 999 ntBASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CDC42EP4Q9H3Q1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDC42EP4Q9H3Q1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CDC42EP4Q9H3Q1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDC42EP4Q9H3Q1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms