RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 NISCHQ9Y2I1 1504 aa50.69■■■■■ 5.71
CCDC47-204ENST00000582252 CCDC180Q9P1Z9 1646 aa44.57■■■■■ 4.73
CCDC47-204ENST00000582252 ZCCHC6Q5VYS8 1495 aaKnown RBP42.5■■■■■ 4.39
CCDC47-204ENST00000582252 ABCC9O60706 1549 aa42.36■■■■■ 4.37
CCDC47-204ENST00000582252 DCAF1Q9Y4B6 1507 aa42■■■■■ 4.31
CCDC47-204ENST00000582252 DCAF8L2P0C7V8 631 aa41.82■■■■■ 4.29
CCDC47-204ENST00000582252 MYO15BQ96JP2 1530 aa41.71■■■■■ 4.27
CCDC47-204ENST00000582252 NACADO15069 1562 aa41.57■■■■■ 4.25
CCDC47-204ENST00000582252 RB1CC1Q8TDY2 1594 aa41.33■■■■■ 4.21
CCDC47-204ENST00000582252 SHROOM4Q9ULL8 1493 aa40.96■■■■■ 4.15
CCDC47-204ENST00000582252 SCRIBQ14160 1630 aa40.77■■■■■ 4.12
CCDC47-204ENST00000582252 UNC13AQ9UPW8 1703 aa40.5■■■■■ 4.07
CCDC47-204ENST00000582252 BICRAQ9NZM4 1560 aa40.01■■■■■ 4
CCDC47-204ENST00000582252 PABPN1Q86U42 306 aaKnown RBP eCLIP39.76■■■■□ 3.96
CCDC47-204ENST00000582252 SUPT5HO00267 1087 aaKnown RBP39.74■■■■□ 3.95
CCDC47-204ENST00000582252 CECR2Q9BXF3 1484 aa39.32■■■■□ 3.89
CCDC47-204ENST00000582252 BAZ1AQ9NRL2 1556 aaPredicted RBP39.23■■■■□ 3.87
CCDC47-204ENST00000582252 SMARCA4P51532 1647 aa39.1■■■■□ 3.85
CCDC47-204ENST00000582252 MROH2BQ7Z745 1585 aa39.08■■■■□ 3.85
CCDC47-204ENST00000582252 RSF1Q96T23 1441 aaPredicted RBP39.07■■■■□ 3.85
CCDC47-204ENST00000582252 EIF4G1Q04637 1599 aaKnown RBP38.87■■■■□ 3.81
CCDC47-204ENST00000582252 WIZO95785 1651 aa38.77■■■■□ 3.8
CCDC47-204ENST00000582252 PEG3Q9GZU2 1588 aa38.69■■■■□ 3.78
CCDC47-204ENST00000582252 SMARCA2P51531 1590 aa38.58■■■■□ 3.77
CCDC47-204ENST00000582252 ATAD2BQ9ULI0 1458 aa38.53■■■■□ 3.76
CCDC47-204ENST00000582252 TOP2AP11388 1531 aaKnown RBP38.41■■■■□ 3.74
CCDC47-204ENST00000582252 CC2D2AQ9P2K1 1620 aa38.41■■■■□ 3.74
CCDC47-204ENST00000582252 CHIC1Q5VXU3 224 aa38.34■■■■□ 3.73
CCDC47-204ENST00000582252 BAZ1BQ9UIG0 1483 aaKnown RBP38.31■■■■□ 3.72
CCDC47-204ENST00000582252 NCAPD3P42695 1498 aa38.3■■■■□ 3.72
CCDC47-204ENST00000582252 HMGXB3Q12766 1538 aa38.28■■■■□ 3.72
CCDC47-204ENST00000582252 CCDC88BA6NC98 1476 aa37.93■■■■□ 3.66
CCDC47-204ENST00000582252 DNAJC5BQ9UF47 199 aa37.67■■■■□ 3.62
CCDC47-204ENST00000582252 TRIM41Q8WV44 630 aa37.36■■■■□ 3.57
CCDC47-204ENST00000582252 CFTRP13569 1480 aa37.31■■■■□ 3.56
CCDC47-204ENST00000582252 PRDM2Q13029 1718 aa37.28■■■■□ 3.56
CCDC47-204ENST00000582252 CADPSQ9ULU8 1353 aa37.26■■■■□ 3.55
CCDC47-204ENST00000582252 LAMC3Q9Y6N6 1575 aa37.15■■■■□ 3.54
CCDC47-204ENST00000582252 NESP48681 1621 aa37.02■■■■□ 3.52
CCDC47-204ENST00000582252 ABCC8Q09428 1581 aa36.96■■■■□ 3.51
CCDC47-204ENST00000582252 FANCD2Q9BXW9 1451 aa36.86■■■■□ 3.49
CCDC47-204ENST00000582252 LOC105371045A0A1W2PR82 267 aa36.85■■■■□ 3.49
CCDC47-204ENST00000582252 WRNQ14191 1432 aaPredicted RBP eCLIP36.83■■■■□ 3.49
CCDC47-204ENST00000582252 PDS5BQ9NTI5 1447 aa36.82■■■■□ 3.49
CCDC47-204ENST00000582252 KIF21AQ7Z4S6 1674 aa36.71■■■■□ 3.47
CCDC47-204ENST00000582252 CEP164Q9UPV0 1460 aa36.71■■■■□ 3.47
CCDC47-204ENST00000582252 SYNJ1O43426 1573 aa36.7■■■■□ 3.47
CCDC47-204ENST00000582252 TOP2BQ02880 1626 aa36.65■■■■□ 3.46
CCDC47-204ENST00000582252 BIVM-ERCC5R4GMW8 1640 aa36.65■■■■□ 3.46
CCDC47-204ENST00000582252 FAM9AQ8IZU1 332 aaPredicted RBP36.64■■■■□ 3.46
CCDC47-204ENST00000582252 CUX1P39880 1505 aa36.6■■■■□ 3.45
CCDC47-204ENST00000582252 DNMBPQ6XZF7 1577 aa36.5■■■■□ 3.43
CCDC47-204ENST00000582252 ERCC6Q03468 1493 aa36.44■■■■□ 3.42
CCDC47-204ENST00000582252 EEA1Q15075 1411 aa36.43■■■■□ 3.42
CCDC47-204ENST00000582252 TOPBP1Q92547 1522 aa36.41■■■■□ 3.42
CCDC47-204ENST00000582252 URB2Q14146 1524 aaKnown RBP36.4■■■■□ 3.42
CCDC47-204ENST00000582252 MRC2Q9UBG0 1479 aa36.37■■■■□ 3.41
CCDC47-204ENST00000582252 FGD5Q6ZNL6 1462 aa36.28■■■■□ 3.4
CCDC47-204ENST00000582252 WDR62O43379 1518 aa36.23■■■■□ 3.39
CCDC47-204ENST00000582252 THOC2Q8NI27 1593 aaKnown RBP36.23■■■■□ 3.39
CCDC47-204ENST00000582252 SOGA1O94964 1423 aa36.23■■■■□ 3.39
CCDC47-204ENST00000582252 POLA1P09884 1462 aaPredicted RBP36.19■■■■□ 3.38
CCDC47-204ENST00000582252 CSRNP3Q8WYN3 585 aa36.08■■■■□ 3.37
CCDC47-204ENST00000582252 EHMT2Q96KQ7 1210 aa36.07■■■■□ 3.36
CCDC47-204ENST00000582252 RUSC2Q8N2Y8 1516 aa36.03■■■■□ 3.36
CCDC47-204ENST00000582252 ABCA10Q8WWZ4 1543 aa36■■■■□ 3.35
CCDC47-204ENST00000582252 RAD54L2Q9Y4B4 1467 aa36■■■■□ 3.35
CCDC47-204ENST00000582252 WDR97A6NE52 1622 aa35.98■■■■□ 3.35
CCDC47-204ENST00000582252 KIF27Q86VH2 1401 aa35.96■■■■□ 3.35
CCDC47-204ENST00000582252 CUX2O14529 1486 aa35.95■■■■□ 3.34
CCDC47-204ENST00000582252 TARBP1Q13395 1621 aaKnown RBP35.94■■■■□ 3.34
CCDC47-204ENST00000582252 GOLGA3Q08378 1498 aa35.93■■■■□ 3.34
CCDC47-204ENST00000582252 KIF21BO75037 1637 aa35.9■■■■□ 3.34
CCDC47-204ENST00000582252 TNIKQ9UKE5 1360 aa35.89■■■■□ 3.34
CCDC47-204ENST00000582252 PCGF6Q9BYE7 350 aa35.87■■■■□ 3.33
CCDC47-204ENST00000582252 IFT140Q96RY7 1462 aa35.86■■■■□ 3.33
CCDC47-204ENST00000582252 TRIM26Q12899 539 aaPredicted RBP35.78■■■■□ 3.32
CCDC47-204ENST00000582252 ABCA5Q8WWZ7 1642 aa35.77■■■■□ 3.32
CCDC47-204ENST00000582252 CEP162Q5TB80 1403 aa35.73■■■■□ 3.31
CCDC47-204ENST00000582252 UBTFP17480 764 aaKnown RBP35.7■■■■□ 3.31
CCDC47-204ENST00000582252 TDRD9Q8NDG6 1382 aaKnown RBP35.67■■■■□ 3.3
CCDC47-204ENST00000582252 GAPVD1Q14C86 1478 aa35.66■■■■□ 3.3
CCDC47-204ENST00000582252 IGF1RP08069 1367 aa35.62■■■■□ 3.29
CCDC47-204ENST00000582252 ERICH3Q5RHP9 1530 aa35.6■■■■□ 3.29
CCDC47-204ENST00000582252 ZNF608Q9ULD9 1512 aaPredicted RBP35.59■■■■□ 3.29
CCDC47-204ENST00000582252 PBRM1Q86U86 1689 aa35.59■■■■□ 3.29
CCDC47-204ENST00000582252 PRXQ9BXM0 1461 aa35.58■■■■□ 3.29
CCDC47-204ENST00000582252 EIF4G3O43432 1585 aaKnown RBP35.57■■■■□ 3.28
CCDC47-204ENST00000582252 CUL7Q14999 1698 aa35.56■■■■□ 3.28
CCDC47-204ENST00000582252 AQRO60306 1485 aaKnown RBP eCLIP35.54■■■■□ 3.281e-7■■■■□ 23.2
CCDC47-204ENST00000582252 RAPGEF2Q9Y4G8 1499 aa35.49■■■■□ 3.27
CCDC47-204ENST00000582252 GRIN2BQ13224 1484 aa35.49■■■■□ 3.27
CCDC47-204ENST00000582252 CARMIL1Q5VZK9 1371 aa35.45■■■■□ 3.27
CCDC47-204ENST00000582252 HRCP23327 699 aa35.36■■■■□ 3.25
CCDC47-204ENST00000582252 ADAMTS12P58397 1594 aa35.34■■■■□ 3.25
CCDC47-204ENST00000582252 CLIP1P30622 1438 aa35.33■■■■□ 3.25
CCDC47-204ENST00000582252 FHAD1B1AJZ9 1412 aa35.29■■■■□ 3.24
CCDC47-204ENST00000582252 MAGI1Q96QZ7 1491 aaPredicted RBP35.27■■■■□ 3.24
CCDC47-204ENST00000582252 SNAPC4Q5SXM2 1469 aa35.27■■■■□ 3.24
CCDC47-204ENST00000582252 VPS8Q8N3P4 1428 aa35.12■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms