RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 NISCHQ9Y2I1 1504 aa53.16■■■■■ 6.1
SDF4-202ENST00000360001 CCDC180Q9P1Z9 1646 aa46.47■■■■■ 5.03
SDF4-202ENST00000360001 ZCCHC6Q5VYS8 1495 aaKnown RBP44.63■■■■■ 4.73
SDF4-202ENST00000360001 ABCC9O60706 1549 aa44.11■■■■■ 4.65
SDF4-202ENST00000360001 DCAF1Q9Y4B6 1507 aa43.97■■■■■ 4.63
SDF4-202ENST00000360001 DCAF8L2P0C7V8 631 aa43.89■■■■■ 4.62
SDF4-202ENST00000360001 MYO15BQ96JP2 1530 aa43.54■■■■■ 4.56
SDF4-202ENST00000360001 NACADO15069 1562 aa43.32■■■■■ 4.53
SDF4-202ENST00000360001 SHROOM4Q9ULL8 1493 aa43.16■■■■■ 4.5
SDF4-202ENST00000360001 RB1CC1Q8TDY2 1594 aa42.99■■■■■ 4.47
SDF4-202ENST00000360001 SCRIBQ14160 1630 aa42.68■■■■■ 4.42
SDF4-202ENST00000360001 UNC13AQ9UPW8 1703 aa42.16■■■■■ 4.34
SDF4-202ENST00000360001 BICRAQ9NZM4 1560 aa41.74■■■■■ 4.27
SDF4-202ENST00000360001 PABPN1Q86U42 306 aaKnown RBP eCLIP41.54■■■■■ 4.241e-10■■■■□ 21.1
SDF4-202ENST00000360001 SUPT5HO00267 1087 aaKnown RBP41.4■■■■■ 4.22
SDF4-202ENST00000360001 CECR2Q9BXF3 1484 aa41.33■■■■■ 4.21
SDF4-202ENST00000360001 RSF1Q96T23 1441 aaPredicted RBP41.16■■■■■ 4.18
SDF4-202ENST00000360001 MROH2BQ7Z745 1585 aa41.07■■■■■ 4.17
SDF4-202ENST00000360001 BAZ1AQ9NRL2 1556 aaPredicted RBP41.06■■■■■ 4.16
SDF4-202ENST00000360001 SMARCA4P51532 1647 aa40.92■■■■■ 4.14
SDF4-202ENST00000360001 WIZO95785 1651 aa40.72■■■■■ 4.11
SDF4-202ENST00000360001 EIF4G1Q04637 1599 aaKnown RBP40.48■■■■■ 4.07
SDF4-202ENST00000360001 PEG3Q9GZU2 1588 aa40.44■■■■■ 4.07
SDF4-202ENST00000360001 ATAD2BQ9ULI0 1458 aa40.3■■■■■ 4.04
SDF4-202ENST00000360001 TOP2AP11388 1531 aaKnown RBP40.29■■■■■ 4.04
SDF4-202ENST00000360001 SMARCA2P51531 1590 aa40.26■■■■■ 4.03
SDF4-202ENST00000360001 BAZ1BQ9UIG0 1483 aaKnown RBP40.03■■■■■ 4
SDF4-202ENST00000360001 NCAPD3P42695 1498 aa39.99■■■■□ 3.99
SDF4-202ENST00000360001 CC2D2AQ9P2K1 1620 aa39.93■■■■□ 3.98
SDF4-202ENST00000360001 HMGXB3Q12766 1538 aa39.92■■■■□ 3.98
SDF4-202ENST00000360001 CCDC88BA6NC98 1476 aa39.87■■■■□ 3.97
SDF4-202ENST00000360001 CHIC1Q5VXU3 224 aa39.55■■■■□ 3.92
SDF4-202ENST00000360001 DNAJC5BQ9UF47 199 aa39.12■■■■□ 3.85
SDF4-202ENST00000360001 CFTRP13569 1480 aa39.04■■■■□ 3.84
SDF4-202ENST00000360001 ABCC8Q09428 1581 aa38.96■■■■□ 3.83
SDF4-202ENST00000360001 TRIM41Q8WV44 630 aa38.94■■■■□ 3.82
SDF4-202ENST00000360001 CADPSQ9ULU8 1353 aa38.93■■■■□ 3.82
SDF4-202ENST00000360001 PRDM2Q13029 1718 aa38.84■■■■□ 3.81
SDF4-202ENST00000360001 WRNQ14191 1432 aaPredicted RBP eCLIP38.73■■■■□ 3.793e-6■■■■□ 26.3
SDF4-202ENST00000360001 NESP48681 1621 aa38.68■■■■□ 3.78
SDF4-202ENST00000360001 LAMC3Q9Y6N6 1575 aa38.66■■■■□ 3.78
SDF4-202ENST00000360001 SYNJ1O43426 1573 aa38.6■■■■□ 3.77
SDF4-202ENST00000360001 FANCD2Q9BXW9 1451 aa38.5■■■■□ 3.75
SDF4-202ENST00000360001 TOP2BQ02880 1626 aa38.46■■■■□ 3.75
SDF4-202ENST00000360001 BIVM-ERCC5R4GMW8 1640 aa38.43■■■■□ 3.74
SDF4-202ENST00000360001 CUX1P39880 1505 aa38.42■■■■□ 3.74
SDF4-202ENST00000360001 PDS5BQ9NTI5 1447 aa38.34■■■■□ 3.73
SDF4-202ENST00000360001 CEP164Q9UPV0 1460 aa38.28■■■■□ 3.72
SDF4-202ENST00000360001 FAM9AQ8IZU1 332 aaPredicted RBP38.22■■■■□ 3.71
SDF4-202ENST00000360001 KIF21AQ7Z4S6 1674 aa38.22■■■■□ 3.71
SDF4-202ENST00000360001 SOGA1O94964 1423 aa38.18■■■■□ 3.7
SDF4-202ENST00000360001 DNMBPQ6XZF7 1577 aa38.13■■■■□ 3.69
SDF4-202ENST00000360001 TOPBP1Q92547 1522 aa38.07■■■■□ 3.69
SDF4-202ENST00000360001 RUSC2Q8N2Y8 1516 aa38.06■■■■□ 3.68
SDF4-202ENST00000360001 URB2Q14146 1524 aaKnown RBP38.06■■■■□ 3.68
SDF4-202ENST00000360001 EEA1Q15075 1411 aa38.05■■■■□ 3.68
SDF4-202ENST00000360001 LOC105371045A0A1W2PR82 267 aa38.02■■■■□ 3.68
SDF4-202ENST00000360001 FGD5Q6ZNL6 1462 aa38.01■■■■□ 3.68
SDF4-202ENST00000360001 MRC2Q9UBG0 1479 aa37.88■■■■□ 3.65
SDF4-202ENST00000360001 POLA1P09884 1462 aaPredicted RBP37.87■■■■□ 3.65
SDF4-202ENST00000360001 CSRNP3Q8WYN3 585 aa37.85■■■■□ 3.65
SDF4-202ENST00000360001 ERCC6Q03468 1493 aa37.82■■■■□ 3.64
SDF4-202ENST00000360001 KIF27Q86VH2 1401 aa37.76■■■■□ 3.64
SDF4-202ENST00000360001 RAD54L2Q9Y4B4 1467 aa37.74■■■■□ 3.63
SDF4-202ENST00000360001 CUX2O14529 1486 aa37.72■■■■□ 3.63
SDF4-202ENST00000360001 WDR62O43379 1518 aa37.71■■■■□ 3.63
SDF4-202ENST00000360001 ABCA10Q8WWZ4 1543 aa37.68■■■■□ 3.62
SDF4-202ENST00000360001 EHMT2Q96KQ7 1210 aa37.68■■■■□ 3.62
SDF4-202ENST00000360001 THOC2Q8NI27 1593 aaKnown RBP37.65■■■■□ 3.62
SDF4-202ENST00000360001 WDR97A6NE52 1622 aa37.6■■■■□ 3.61
SDF4-202ENST00000360001 KIF21BO75037 1637 aa37.59■■■■□ 3.61
SDF4-202ENST00000360001 TARBP1Q13395 1621 aaKnown RBP37.54■■■■□ 3.6
SDF4-202ENST00000360001 GOLGA3Q08378 1498 aa37.52■■■■□ 3.6
SDF4-202ENST00000360001 PRXQ9BXM0 1461 aa37.48■■■■□ 3.59
SDF4-202ENST00000360001 IGF1RP08069 1367 aa37.47■■■■□ 3.59
SDF4-202ENST00000360001 RAPGEF2Q9Y4G8 1499 aa37.42■■■■□ 3.58
SDF4-202ENST00000360001 ABCA5Q8WWZ7 1642 aa37.41■■■■□ 3.58
SDF4-202ENST00000360001 TDRD9Q8NDG6 1382 aaKnown RBP37.38■■■■□ 3.58
SDF4-202ENST00000360001 IFT140Q96RY7 1462 aa37.38■■■■□ 3.57
SDF4-202ENST00000360001 ERICH3Q5RHP9 1530 aa37.38■■■■□ 3.57
SDF4-202ENST00000360001 TNIKQ9UKE5 1360 aa37.35■■■■□ 3.57
SDF4-202ENST00000360001 UBTFP17480 764 aaKnown RBP37.32■■■■□ 3.56
SDF4-202ENST00000360001 GAPVD1Q14C86 1478 aa37.32■■■■□ 3.56
SDF4-202ENST00000360001 CARMIL1Q5VZK9 1371 aa37.26■■■■□ 3.55
SDF4-202ENST00000360001 CUL7Q14999 1698 aa37.2■■■■□ 3.55
SDF4-202ENST00000360001 ZNF608Q9ULD9 1512 aaPredicted RBP37.2■■■■□ 3.55
SDF4-202ENST00000360001 AQRO60306 1485 aaKnown RBP eCLIP37.19■■■■□ 3.542e-9■■■■□ 19.9
SDF4-202ENST00000360001 CEP162Q5TB80 1403 aa37.15■■■■□ 3.54
SDF4-202ENST00000360001 PBRM1Q86U86 1689 aa37.14■■■■□ 3.54
SDF4-202ENST00000360001 EIF4G3O43432 1585 aaKnown RBP37.07■■■■□ 3.53
SDF4-202ENST00000360001 GRIN2BQ13224 1484 aa37.06■■■■□ 3.52
SDF4-202ENST00000360001 ADAMTS12P58397 1594 aa36.93■■■■□ 3.5
SDF4-202ENST00000360001 FHAD1B1AJZ9 1412 aa36.91■■■■□ 3.5
SDF4-202ENST00000360001 CLIP1P30622 1438 aa36.9■■■■□ 3.5
SDF4-202ENST00000360001 SNAPC4Q5SXM2 1469 aa36.85■■■■□ 3.49
SDF4-202ENST00000360001 MAGI1Q96QZ7 1491 aaPredicted RBP36.77■■■■□ 3.48
SDF4-202ENST00000360001 RANGAP1P46060 587 aaPredicted RBP36.77■■■■□ 3.48
SDF4-202ENST00000360001 CTTNBP2Q8WZ74 1663 aa36.76■■■■□ 3.47
SDF4-202ENST00000360001 SYNJ2O15056 1496 aa36.64■■■■□ 3.46
SDF4-202ENST00000360001 ARHGAP35Q9NRY4 1499 aa36.63■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms