Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 MIR6765-201ENST00000614092 87 ntBASIC18.8■□□□□ 0.6
SRRM4A7MD48 AC129492.7-201ENST00000622992 756 ntBASIC18.8■□□□□ 0.6
SRRM4A7MD48 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.8■□□□□ 0.6
SRRM4A7MD48 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SRRM4A7MD48 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SRRM4A7MD48 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SRRM4A7MD48 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SRRM4A7MD48 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 AC141586.4-201ENST00000624558 1573 ntBASIC18.79■□□□□ 0.6
SRRM4A7MD48 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SRRM4A7MD48 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SRRM4A7MD48 AC004812.2-201ENST00000611079 2094 ntBASIC18.78■□□□□ 0.6
SRRM4A7MD48 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.78■□□□□ 0.6
SRRM4A7MD48 KRT18P60-201ENST00000312876 1297 ntBASIC18.78■□□□□ 0.6
SRRM4A7MD48 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SRRM4A7MD48 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.78■□□□□ 0.6
SRRM4A7MD48 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.78■□□□□ 0.6
SRRM4A7MD48 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SRRM4A7MD48 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SRRM4A7MD48 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SRRM4A7MD48 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.77■□□□□ 0.6
SRRM4A7MD48 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.77■□□□□ 0.6
SRRM4A7MD48 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
SRRM4A7MD48 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.77■□□□□ 0.6
SRRM4A7MD48 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SRRM4A7MD48 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRRM4A7MD48 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SRRM4A7MD48 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SRRM4A7MD48 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SRRM4A7MD48 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRRM4A7MD48 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRRM4A7MD48 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SRRM4A7MD48 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.75■□□□□ 0.59
SRRM4A7MD48 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.75■□□□□ 0.59
SRRM4A7MD48 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRRM4A7MD48 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SRRM4A7MD48 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.75■□□□□ 0.59
SRRM4A7MD48 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRRM4A7MD48 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.74■□□□□ 0.59
SRRM4A7MD48 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRRM4A7MD48 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRRM4A7MD48 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRRM4A7MD48 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.74■□□□□ 0.59
SRRM4A7MD48 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SRRM4A7MD48 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SRRM4A7MD48 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.73■□□□□ 0.59
SRRM4A7MD48 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SRRM4A7MD48 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC18.73■□□□□ 0.59
SRRM4A7MD48 ABHD17AP5-201ENST00000580133 923 ntBASIC18.73■□□□□ 0.59
SRRM4A7MD48 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SRRM4A7MD48 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SRRM4A7MD48 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SRRM4A7MD48 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.72■□□□□ 0.59
SRRM4A7MD48 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
SRRM4A7MD48 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
SRRM4A7MD48 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SRRM4A7MD48 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SRRM4A7MD48 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SRRM4A7MD48 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SRRM4A7MD48 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SRRM4A7MD48 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.71■□□□□ 0.59
SRRM4A7MD48 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.71■□□□□ 0.59
SRRM4A7MD48 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SRRM4A7MD48 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.71■□□□□ 0.59
SRRM4A7MD48 LONRF2P2-201ENST00000439212 571 ntBASIC18.71■□□□□ 0.59
SRRM4A7MD48 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.71■□□□□ 0.59
SRRM4A7MD48 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.71■□□□□ 0.59
SRRM4A7MD48 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SRRM4A7MD48 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SRRM4A7MD48 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SRRM4A7MD48 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.7■□□□□ 0.58
SRRM4A7MD48 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 ABCB10P4-201ENST00000566803 2184 ntBASIC18.7■□□□□ 0.58
SRRM4A7MD48 NTF6A-201ENST00000591175 560 ntBASIC18.7■□□□□ 0.58
SRRM4A7MD48 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SRRM4A7MD48 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SRRM4A7MD48 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SRRM4A7MD48 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.69■□□□□ 0.58
SRRM4A7MD48 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SRRM4A7MD48 AL592295.1-201ENST00000400984 884 ntBASIC18.69■□□□□ 0.58
SRRM4A7MD48 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms