RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 NISCHQ9Y2I1 1504 aa45.51■■■■■ 4.88
NPAS3-206ENST00000548645 SHROOM4Q9ULL8 1493 aa39.41■■■■□ 3.9
NPAS3-206ENST00000548645 SUPT5HO00267 1087 aaKnown RBP39.08■■■■□ 3.85
NPAS3-206ENST00000548645 HRCP23327 699 aa38.69■■■■□ 3.78
NPAS3-206ENST00000548645 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
NPAS3-206ENST00000548645 CHIC1Q5VXU3 224 aa38.41■■■■□ 3.74
NPAS3-206ENST00000548645 MYO15BQ96JP2 1530 aa38.4■■■■□ 3.74
NPAS3-206ENST00000548645 CCDC180Q9P1Z9 1646 aa38.29■■■■□ 3.72
NPAS3-206ENST00000548645 PCGF6Q9BYE7 350 aa38.07■■■■□ 3.69
NPAS3-206ENST00000548645 DCAF1Q9Y4B6 1507 aa37.73■■■■□ 3.63
NPAS3-206ENST00000548645 PPARGC1BQ86YN6 1023 aaKnown RBP37.65■■■■□ 3.62
NPAS3-206ENST00000548645 DCAF8L2P0C7V8 631 aa37.55■■■■□ 3.6
NPAS3-206ENST00000548645 LOC105371045A0A1W2PR82 267 aa37.27■■■■□ 3.56
NPAS3-206ENST00000548645 TRIM26Q12899 539 aaPredicted RBP37.2■■■■□ 3.55
NPAS3-206ENST00000548645 ZEB1P37275 1124 aaPredicted RBP36.84■■■■□ 3.49
NPAS3-206ENST00000548645 ABCC9O60706 1549 aa36.64■■■■□ 3.46
NPAS3-206ENST00000548645 PELP1Q8IZL8 1130 aaKnown RBP36.59■■■■□ 3.45
NPAS3-206ENST00000548645 TRIM41Q8WV44 630 aa36.37■■■■□ 3.41
NPAS3-206ENST00000548645 RSF1Q96T23 1441 aaPredicted RBP36.35■■■■□ 3.41
NPAS3-206ENST00000548645 SCAF1Q9H7N4 1312 aaKnown RBP36.13■■■■□ 3.37
NPAS3-206ENST00000548645 RB1CC1Q8TDY2 1594 aa36.1■■■■□ 3.37
NPAS3-206ENST00000548645 FAM9AQ8IZU1 332 aaPredicted RBP36.07■■■■□ 3.36
NPAS3-206ENST00000548645 SCRIBQ14160 1630 aa36.03■■■■□ 3.36
NPAS3-206ENST00000548645 EHMT2Q96KQ7 1210 aa35.71■■■■□ 3.31
NPAS3-206ENST00000548645 ACIN1Q9UKV3 1341 aaKnown RBP35.57■■■■□ 3.28
NPAS3-206ENST00000548645 CCER1Q8TC90 406 aaPredicted RBP35.51■■■■□ 3.28
NPAS3-206ENST00000548645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.49■■■■□ 3.27
NPAS3-206ENST00000548645 CECR2Q9BXF3 1484 aa35.43■■■■□ 3.26
NPAS3-206ENST00000548645 MROH2BQ7Z745 1585 aa35.41■■■■□ 3.26
NPAS3-206ENST00000548645 NEUROD1Q13562 356 aa35.38■■■■□ 3.25
NPAS3-206ENST00000548645 CENPBP07199 599 aaPredicted RBP35.3■■■■□ 3.24
NPAS3-206ENST00000548645 NACADO15069 1562 aa35.29■■■■□ 3.24
NPAS3-206ENST00000548645 DIEXFQ68CQ4 756 aaKnown RBP35.28■■■■□ 3.24
NPAS3-206ENST00000548645 WIZO95785 1651 aa35.26■■■■□ 3.23
NPAS3-206ENST00000548645 GTF3C3Q9Y5Q9 886 aa35.15■■■■□ 3.22
NPAS3-206ENST00000548645 BAZ1AQ9NRL2 1556 aaPredicted RBP35.14■■■■□ 3.22
NPAS3-206ENST00000548645 EIF4G1Q04637 1599 aaKnown RBP35.14■■■■□ 3.22
NPAS3-206ENST00000548645 WRNQ14191 1432 aaPredicted RBP eCLIP35.13■■■■□ 3.21
NPAS3-206ENST00000548645 MYT1Q01538 1121 aa35.06■■■■□ 3.2
NPAS3-206ENST00000548645 CEP162Q5TB80 1403 aa34.91■■■■□ 3.18
NPAS3-206ENST00000548645 TNIKQ9UKE5 1360 aa34.82■■■■□ 3.16
NPAS3-206ENST00000548645 ZNF316A6NFI3 1004 aaPredicted RBP34.81■■■■□ 3.16
NPAS3-206ENST00000548645 CCDC88BA6NC98 1476 aa34.81■■■■□ 3.16
NPAS3-206ENST00000548645 TTBK1Q5TCY1 1321 aaPredicted RBP34.8■■■■□ 3.16
NPAS3-206ENST00000548645 ABCC8Q09428 1581 aa34.78■■■■□ 3.16
NPAS3-206ENST00000548645 TOP2AP11388 1531 aaKnown RBP34.74■■■■□ 3.15
NPAS3-206ENST00000548645 EEA1Q15075 1411 aa34.69■■■■□ 3.14
NPAS3-206ENST00000548645 SOGA1O94964 1423 aa34.64■■■■□ 3.14
NPAS3-206ENST00000548645 CSRNP3Q8WYN3 585 aa34.58■■■■□ 3.13
NPAS3-206ENST00000548645 SMARCA2P51531 1590 aa34.56■■■■□ 3.12
NPAS3-206ENST00000548645 UBTFP17480 764 aaKnown RBP34.54■■■■□ 3.12
NPAS3-206ENST00000548645 PABPN1Q86U42 306 aaKnown RBP eCLIP34.53■■■■□ 3.12
NPAS3-206ENST00000548645 SMARCA4P51532 1647 aa34.48■■■■□ 3.11
NPAS3-206ENST00000548645 GOLGA3Q08378 1498 aa34.47■■■■□ 3.11
NPAS3-206ENST00000548645 YTHDC1Q96MU7 727 aaKnown RBP34.46■■■■□ 3.11
NPAS3-206ENST00000548645 RUSC2Q8N2Y8 1516 aa34.4■■■■□ 3.1
NPAS3-206ENST00000548645 MIER1Q8N108 512 aa34.37■■■■□ 3.09
NPAS3-206ENST00000548645 UNC13AQ9UPW8 1703 aa34.34■■■■□ 3.09
NPAS3-206ENST00000548645 HNRNPUL2Q1KMD3 747 aaKnown RBP34.24■■■■□ 3.07
NPAS3-206ENST00000548645 CEP164Q9UPV0 1460 aa34.18■■■■□ 3.06
NPAS3-206ENST00000548645 KIF21BO75037 1637 aa34.12■■■■□ 3.05
NPAS3-206ENST00000548645 CLIP1P30622 1438 aa34.1■■■■□ 3.05
NPAS3-206ENST00000548645 BICRAQ9NZM4 1560 aa34.08■■■■□ 3.05
NPAS3-206ENST00000548645 VPS8Q8N3P4 1428 aa34.06■■■■□ 3.04
NPAS3-206ENST00000548645 APLP2Q06481 763 aa34.01■■■■□ 3.04
NPAS3-206ENST00000548645 BAZ1BQ9UIG0 1483 aaKnown RBP33.95■■■■□ 3.03
NPAS3-206ENST00000548645 CLSPNQ9HAW4 1339 aa33.95■■■■□ 3.02
NPAS3-206ENST00000548645 SYNJ1O43426 1573 aa33.89■■■■□ 3.02
NPAS3-206ENST00000548645 PEG3Q9GZU2 1588 aa33.78■■■■□ 3
NPAS3-206ENST00000548645 RAPGEF2Q9Y4G8 1499 aa33.76■■■■□ 3
NPAS3-206ENST00000548645 DHX57Q6P158 1386 aaKnown RBP33.7■■■□□ 2.99
NPAS3-206ENST00000548645 SUPT16HQ9Y5B9 1047 aaKnown RBP33.66■■■□□ 2.98
NPAS3-206ENST00000548645 RANGAP1P46060 587 aaPredicted RBP33.57■■■□□ 2.96
NPAS3-206ENST00000548645 ERICH3Q5RHP9 1530 aa33.44■■■□□ 2.94
NPAS3-206ENST00000548645 TOP2BQ02880 1626 aa33.43■■■□□ 2.94
NPAS3-206ENST00000548645 ATAD2BQ9ULI0 1458 aa33.41■■■□□ 2.94
NPAS3-206ENST00000548645 ARAP1Q96P48 1450 aa33.41■■■□□ 2.94
NPAS3-206ENST00000548645 RRBP1Q9P2E9 1410 aaKnown RBP33.39■■■□□ 2.94
NPAS3-206ENST00000548645 KANK4Q5T7N3 995 aaPredicted RBP33.35■■■□□ 2.93
NPAS3-206ENST00000548645 CUX2O14529 1486 aa33.35■■■□□ 2.93
NPAS3-206ENST00000548645 PRXQ9BXM0 1461 aa33.35■■■□□ 2.93
NPAS3-206ENST00000548645 TSHZ2Q9NRE2 1034 aa33.33■■■□□ 2.93
NPAS3-206ENST00000548645 BIVM-ERCC5R4GMW8 1640 aa33.28■■■□□ 2.92
NPAS3-206ENST00000548645 CCNB3Q8WWL7 1395 aa33.21■■■□□ 2.91
NPAS3-206ENST00000548645 ANP32EQ9BTT0 268 aa33.17■■■□□ 2.9
NPAS3-206ENST00000548645 KIF27Q86VH2 1401 aa33.03■■■□□ 2.88
NPAS3-206ENST00000548645 KCNH8Q96L42 1107 aa33.02■■■□□ 2.88
NPAS3-206ENST00000548645 RAB3GAP2Q9H2M9 1393 aa33.01■■■□□ 2.88
NPAS3-206ENST00000548645 ITGAEP38570 1179 aa33■■■□□ 2.87
NPAS3-206ENST00000548645 ARHGAP35Q9NRY4 1499 aa32.99■■■□□ 2.87
NPAS3-206ENST00000548645 MAPKBP1O60336 1514 aa32.99■■■□□ 2.87
NPAS3-206ENST00000548645 CUX1P39880 1505 aa32.91■■■□□ 2.86
NPAS3-206ENST00000548645 FKBP8Q14318 412 aa32.89■■■□□ 2.86
NPAS3-206ENST00000548645 BCANQ96GW7 911 aa32.87■■■□□ 2.85
NPAS3-206ENST00000548645 SETD5Q9C0A6 1442 aa32.87■■■□□ 2.85
NPAS3-206ENST00000548645 MAP3K1Q13233 1512 aa32.85■■■□□ 2.85
NPAS3-206ENST00000548645 DDX10Q13206 875 aaKnown RBP32.84■■■□□ 2.85
NPAS3-206ENST00000548645 TIAM1Q13009 1591 aa32.8■■■□□ 2.84
NPAS3-206ENST00000548645 WDR97A6NE52 1622 aa32.79■■■□□ 2.84
NPAS3-206ENST00000548645 NEFLP07196 543 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms