RNA–Protein interactions for RNA: ENST00000361574.9

R3HDM4-201, Transcript of R3H domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene R3HDM4, Length 1,815 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-201ENST00000361574 NISCHQ9Y2I1 1504 aa50.02■■■■■ 5.6
R3HDM4-201ENST00000361574 CCDC180Q9P1Z9 1646 aa43.19■■■■■ 4.51
R3HDM4-201ENST00000361574 ZCCHC6Q5VYS8 1495 aaKnown RBP42.24■■■■■ 4.35
R3HDM4-201ENST00000361574 DCAF1Q9Y4B6 1507 aa41.45■■■■■ 4.23
R3HDM4-201ENST00000361574 SHROOM4Q9ULL8 1493 aa41.31■■■■■ 4.2
R3HDM4-201ENST00000361574 DCAF8L2P0C7V8 631 aa40.7■■■■■ 4.11
R3HDM4-201ENST00000361574 MYO15BQ96JP2 1530 aa40.59■■■■■ 4.09
R3HDM4-201ENST00000361574 SUPT5HO00267 1087 aaKnown RBP40.23■■■■■ 4.03
R3HDM4-201ENST00000361574 NACADO15069 1562 aa39.96■■■■□ 3.99
R3HDM4-201ENST00000361574 ABCC9O60706 1549 aa39.78■■■■□ 3.96
R3HDM4-201ENST00000361574 SCRIBQ14160 1630 aa39.75■■■■□ 3.95
R3HDM4-201ENST00000361574 RB1CC1Q8TDY2 1594 aa39.34■■■■□ 3.89
R3HDM4-201ENST00000361574 CHIC1Q5VXU3 224 aa39.18■■■■□ 3.86
R3HDM4-201ENST00000361574 RSF1Q96T23 1441 aaPredicted RBP39.17■■■■□ 3.86
R3HDM4-201ENST00000361574 CECR2Q9BXF3 1484 aa38.74■■■■□ 3.79
R3HDM4-201ENST00000361574 UNC13AQ9UPW8 1703 aa38.67■■■■□ 3.78
R3HDM4-201ENST00000361574 MROH2BQ7Z745 1585 aa38.66■■■■□ 3.78
R3HDM4-201ENST00000361574 BAZ1AQ9NRL2 1556 aaPredicted RBP38.53■■■■□ 3.76
R3HDM4-201ENST00000361574 WIZO95785 1651 aa38.4■■■■□ 3.74
R3HDM4-201ENST00000361574 SMARCA4P51532 1647 aa38.24■■■■□ 3.71
R3HDM4-201ENST00000361574 BICRAQ9NZM4 1560 aa38.21■■■■□ 3.71
R3HDM4-201ENST00000361574 TOP2AP11388 1531 aaKnown RBP38.05■■■■□ 3.68
R3HDM4-201ENST00000361574 EIF4G1Q04637 1599 aaKnown RBP37.91■■■■□ 3.66
R3HDM4-201ENST00000361574 PEG3Q9GZU2 1588 aa37.81■■■■□ 3.64
R3HDM4-201ENST00000361574 TRIM41Q8WV44 630 aa37.8■■■■□ 3.64
R3HDM4-201ENST00000361574 SMARCA2P51531 1590 aa37.73■■■■□ 3.63
R3HDM4-201ENST00000361574 PABPN1Q86U42 306 aaKnown RBP eCLIP37.67■■■■□ 3.624e-10■□□□□ 11.2
R3HDM4-201ENST00000361574 CCDC88BA6NC98 1476 aa37.65■■■■□ 3.62
R3HDM4-201ENST00000361574 LOC105371045A0A1W2PR82 267 aa37.64■■■■□ 3.62
R3HDM4-201ENST00000361574 ATAD2BQ9ULI0 1458 aa37.34■■■■□ 3.57
R3HDM4-201ENST00000361574 BAZ1BQ9UIG0 1483 aaKnown RBP37.15■■■■□ 3.54
R3HDM4-201ENST00000361574 ABCC8Q09428 1581 aa37.15■■■■□ 3.54
R3HDM4-201ENST00000361574 FAM9AQ8IZU1 332 aaPredicted RBP37.06■■■■□ 3.52
R3HDM4-201ENST00000361574 PCGF6Q9BYE7 350 aa36.94■■■■□ 3.5
R3HDM4-201ENST00000361574 HMGXB3Q12766 1538 aa36.93■■■■□ 3.5
R3HDM4-201ENST00000361574 NCAPD3P42695 1498 aa36.88■■■■□ 3.49
R3HDM4-201ENST00000361574 EEA1Q15075 1411 aa36.87■■■■□ 3.49
R3HDM4-201ENST00000361574 HRCP23327 699 aa36.82■■■■□ 3.48
R3HDM4-201ENST00000361574 WRNQ14191 1432 aaPredicted RBP eCLIP36.81■■■■□ 3.48
R3HDM4-201ENST00000361574 TRIM26Q12899 539 aaPredicted RBP36.79■■■■□ 3.48
R3HDM4-201ENST00000361574 SOGA1O94964 1423 aa36.66■■■■□ 3.46
R3HDM4-201ENST00000361574 SYNJ1O43426 1573 aa36.65■■■■□ 3.46
R3HDM4-201ENST00000361574 CSRNP3Q8WYN3 585 aa36.48■■■■□ 3.43
R3HDM4-201ENST00000361574 TNIKQ9UKE5 1360 aa36.47■■■■□ 3.43
R3HDM4-201ENST00000361574 RUSC2Q8N2Y8 1516 aa36.47■■■■□ 3.43
R3HDM4-201ENST00000361574 TOP2BQ02880 1626 aa36.45■■■■□ 3.43
R3HDM4-201ENST00000361574 BIVM-ERCC5R4GMW8 1640 aa36.43■■■■□ 3.42
R3HDM4-201ENST00000361574 EHMT2Q96KQ7 1210 aa36.41■■■■□ 3.42
R3HDM4-201ENST00000361574 KIF21BO75037 1637 aa36.36■■■■□ 3.41
R3HDM4-201ENST00000361574 GOLGA3Q08378 1498 aa36.35■■■■□ 3.41
R3HDM4-201ENST00000361574 CFTRP13569 1480 aa36.33■■■■□ 3.41
R3HDM4-201ENST00000361574 CEP162Q5TB80 1403 aa36.3■■■■□ 3.4
R3HDM4-201ENST00000361574 PRDM2Q13029 1718 aa36.28■■■■□ 3.4
R3HDM4-201ENST00000361574 CEP164Q9UPV0 1460 aa36.26■■■■□ 3.4
R3HDM4-201ENST00000361574 CC2D2AQ9P2K1 1620 aa36.1■■■■□ 3.37
R3HDM4-201ENST00000361574 CUX1P39880 1505 aa36.09■■■■□ 3.37
R3HDM4-201ENST00000361574 UBTFP17480 764 aaKnown RBP36.01■■■■□ 3.35
R3HDM4-201ENST00000361574 CADPSQ9ULU8 1353 aa35.95■■■■□ 3.35
R3HDM4-201ENST00000361574 ERICH3Q5RHP9 1530 aa35.93■■■■□ 3.34
R3HDM4-201ENST00000361574 RAPGEF2Q9Y4G8 1499 aa35.88■■■■□ 3.33
R3HDM4-201ENST00000361574 ZEB1P37275 1124 aaPredicted RBP35.87■■■■□ 3.33
R3HDM4-201ENST00000361574 PRXQ9BXM0 1461 aa35.87■■■■□ 3.33
R3HDM4-201ENST00000361574 CLIP1P30622 1438 aa35.78■■■■□ 3.32
R3HDM4-201ENST00000361574 KIF27Q86VH2 1401 aa35.78■■■■□ 3.32
R3HDM4-201ENST00000361574 PPARGC1BQ86YN6 1023 aaKnown RBP35.69■■■■□ 3.3
R3HDM4-201ENST00000361574 VPS8Q8N3P4 1428 aa35.65■■■■□ 3.3
R3HDM4-201ENST00000361574 FANCD2Q9BXW9 1451 aa35.55■■■■□ 3.28
R3HDM4-201ENST00000361574 FGD5Q6ZNL6 1462 aa35.5■■■■□ 3.27
R3HDM4-201ENST00000361574 DNMBPQ6XZF7 1577 aa35.46■■■■□ 3.27
R3HDM4-201ENST00000361574 LAMC3Q9Y6N6 1575 aa35.45■■■■□ 3.27
R3HDM4-201ENST00000361574 CUX2O14529 1486 aa35.44■■■■□ 3.26
R3HDM4-201ENST00000361574 IGF1RP08069 1367 aa35.38■■■■□ 3.25
R3HDM4-201ENST00000361574 ARAP1Q96P48 1450 aa35.36■■■■□ 3.25
R3HDM4-201ENST00000361574 TOPBP1Q92547 1522 aa35.31■■■■□ 3.24
R3HDM4-201ENST00000361574 NESP48681 1621 aa35.28■■■■□ 3.24
R3HDM4-201ENST00000361574 ABCA10Q8WWZ4 1543 aa35.27■■■■□ 3.24
R3HDM4-201ENST00000361574 POLA1P09884 1462 aaPredicted RBP35.2■■■■□ 3.23
R3HDM4-201ENST00000361574 CARMIL1Q5VZK9 1371 aa35.2■■■■□ 3.22
R3HDM4-201ENST00000361574 APLP2Q06481 763 aa35.16■■■■□ 3.22
R3HDM4-201ENST00000361574 ARHGAP35Q9NRY4 1499 aa35.16■■■■□ 3.22
R3HDM4-201ENST00000361574 TTBK1Q5TCY1 1321 aaPredicted RBP35.14■■■■□ 3.22
R3HDM4-201ENST00000361574 WDR97A6NE52 1622 aa35.11■■■■□ 3.21
R3HDM4-201ENST00000361574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.09■■■■□ 3.21
R3HDM4-201ENST00000361574 URB2Q14146 1524 aaKnown RBP35.08■■■■□ 3.21
R3HDM4-201ENST00000361574 PDS5BQ9NTI5 1447 aa35.08■■■■□ 3.21
R3HDM4-201ENST00000361574 CCER1Q8TC90 406 aaPredicted RBP35.07■■■■□ 3.2
R3HDM4-201ENST00000361574 CUL7Q14999 1698 aa35.07■■■■□ 3.2
R3HDM4-201ENST00000361574 RAD54L2Q9Y4B4 1467 aa35.06■■■■□ 3.2
R3HDM4-201ENST00000361574 RANGAP1P46060 587 aaPredicted RBP35■■■■□ 3.19
R3HDM4-201ENST00000361574 MAP3K1Q13233 1512 aa34.95■■■■□ 3.19
R3HDM4-201ENST00000361574 KIF21AQ7Z4S6 1674 aa34.92■■■■□ 3.18
R3HDM4-201ENST00000361574 ABCA5Q8WWZ7 1642 aa34.91■■■■□ 3.18
R3HDM4-201ENST00000361574 DNAJC5BQ9UF47 199 aa34.91■■■■□ 3.18
R3HDM4-201ENST00000361574 CTTNBP2Q8WZ74 1663 aa34.82■■■■□ 3.16
R3HDM4-201ENST00000361574 EFCAB5A4FU69 1503 aa34.81■■■■□ 3.16
R3HDM4-201ENST00000361574 RRBP1Q9P2E9 1410 aaKnown RBP34.8■■■■□ 3.16
R3HDM4-201ENST00000361574 KANK4Q5T7N3 995 aaPredicted RBP34.77■■■■□ 3.16
R3HDM4-201ENST00000361574 FHAD1B1AJZ9 1412 aa34.76■■■■□ 3.15
R3HDM4-201ENST00000361574 TIAM1Q13009 1591 aa34.75■■■■□ 3.15
R3HDM4-201ENST00000361574 TARBP1Q13395 1621 aaKnown RBP34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms