Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SSR3-207ENST00000478842 612 ntTSL 36.24□□□□□ -1.418e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.34□□□□□ -1.558e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-209ENST00000498205 593 ntTSL 24.72□□□□□ -1.658e-7■□□□□ 9.3
LIN28BQ6ZN17 GLG1-210ENST00000565474 601 ntTSL 44.33□□□□□ -1.727e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.646e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.56■■■□□ 2.486e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-202ENST00000561688 705 ntTSL 230.13■■■□□ 2.416e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-204ENST00000563029 776 ntTSL 229.44■■■□□ 2.36e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.286e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-206ENST00000566379 961 ntTSL 224.87■■□□□ 1.576e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-205ENST00000563447 965 ntTSL 218.33■□□□□ 0.526e-9■□□□□ 9.3
LIN28BQ6ZN17 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.63■□□□□ 0.411e-7■□□□□ 9.3
LIN28BQ6ZN17 INSR-207ENST00000601099 570 ntTSL 315.03■□□□□ -01e-7■□□□□ 9.3
LIN28BQ6ZN17 INSR-203ENST00000593970 419 ntTSL 213.91□□□□□ -0.181e-7■□□□□ 9.3
LIN28BQ6ZN17 FADS1-210ENST00000496123 693 ntTSL 512.26□□□□□ -0.451e-7■□□□□ 9.3
LIN28BQ6ZN17 FADS1-213ENST00000539999 405 ntTSL 36.1□□□□□ -1.431e-7■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC8.53□□□□□ -1.043e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC8.18□□□□□ -1.13e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC7.9□□□□□ -1.153e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.383e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.03□□□□□ -1.443e-6■□□□□ 9.3
LIN28BQ6ZN17 CALR-204ENST00000586967 394 ntTSL 215.87■□□□□ 0.131e-31■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-206ENST00000595974 665 ntTSL 318.22■□□□□ 0.512e-9■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-207ENST00000597136 1552 ntTSL 216.6■□□□□ 0.252e-9■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-214ENST00000600840 338 ntTSL 29.94□□□□□ -0.822e-9■□□□□ 9.3
LIN28BQ6ZN17 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.294e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-206ENST00000553529 562 ntTSL 420.82■□□□□ 0.924e-7■□□□□ 9.3
LIN28BQ6ZN17 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.47■□□□□ 0.874e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-204ENST00000553324 566 ntTSL 417.21■□□□□ 0.354e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-235ENST00000557740 569 ntTSL 416.74■□□□□ 0.274e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.65■□□□□ 0.264e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-208ENST00000553868 941 ntTSL 216.11■□□□□ 0.174e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-217ENST00000555116 1885 ntTSL 215.84■□□□□ 0.134e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-210ENST00000553950 584 ntTSL 215.59■□□□□ 0.094e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-219ENST00000555563 895 ntTSL 515.41■□□□□ 0.064e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)15.3■□□□□ 0.044e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.3■□□□□ 0.044e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC15.19■□□□□ 0.024e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-234ENST00000557703 542 ntTSL 415.05■□□□□ -04e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-223ENST00000556689 768 ntTSL 314.77□□□□□ -0.054e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-211ENST00000554310 579 ntTSL 414.68□□□□□ -0.064e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-230ENST00000557427 569 ntTSL 414.6□□□□□ -0.074e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-227ENST00000557269 576 ntTSL 514.09□□□□□ -0.154e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-214ENST00000554604 879 ntTSL 513.99□□□□□ -0.174e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-221ENST00000555773 600 ntTSL 213.54□□□□□ -0.244e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-209ENST00000553949 552 ntTSL 313.4□□□□□ -0.264e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.09□□□□□ -0.314e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-229ENST00000557348 1659 ntTSL 212.92□□□□□ -0.344e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC12.8□□□□□ -0.364e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-216ENST00000554975 780 ntTSL 312.6□□□□□ -0.394e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-215ENST00000554656 817 ntTSL 312.2□□□□□ -0.464e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-213ENST00000554600 837 ntTSL 212.01□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-220ENST00000555634 964 ntTSL 512.01□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-207ENST00000553837 2152 ntTSL 512□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-212ENST00000554467 3416 ntTSL 211.96□□□□□ -0.54e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-218ENST00000555213 611 ntTSL 311.95□□□□□ -0.54e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-224ENST00000556737 572 ntTSL 211.71□□□□□ -0.534e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)11.66□□□□□ -0.544e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.694e-7■□□□□ 9.3
LIN28BQ6ZN17 WARS-220ENST00000554950 1376 ntTSL 210.61□□□□□ -0.714e-7■□□□□ 9.3
LIN28BQ6ZN17 PBX2-202ENST00000478678 1320 ntTSL 1 (best)25.36■■□□□ 1.651e-6■□□□□ 9.3
LIN28BQ6ZN17 PBX2-205ENST00000496171 1050 ntTSL 218.75■□□□□ 0.591e-6■□□□□ 9.3
LIN28BQ6ZN17 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.251e-6■□□□□ 9.3
LIN28BQ6ZN17 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.36e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.26e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-211ENST00000522299 2807 ntTSL 211.24□□□□□ -0.616e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-201ENST00000316403 3080 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.76e-10■□□□□ 9.3
LIN28BQ6ZN17 MOGS-206ENST00000462189 2400 ntTSL 211.74□□□□□ -0.532e-10■□□□□ 9.3
LIN28BQ6ZN17 SSR1-207ENST00000479485 640 ntTSL 24.37□□□□□ -1.711e-9■□□□□ 9.3
LIN28BQ6ZN17 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.93■■□□□ 1.268e-15■□□□□ 9.2
LIN28BQ6ZN17 USP48-210ENST00000489108 443 ntTSL 219.06■□□□□ 0.643e-9■□□□□ 9.2
LIN28BQ6ZN17 EZR-204ENST00000476189 956 ntTSL 313.77□□□□□ -0.213e-9■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-207ENST00000513231 871 ntTSL 1 (best)27.18■■□□□ 1.948e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-206ENST00000510934 589 ntTSL 223.34■■□□□ 1.338e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.42■■□□□ 1.188e-7■□□□□ 9.2
LIN28BQ6ZN17 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.998e-7■□□□□ 9.2
LIN28BQ6ZN17 DYNC1H1-204ENST00000555062 1351 ntTSL 219.84■□□□□ 0.771e-8■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.64■□□□□ 0.738e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.628e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.6■□□□□ 0.571e-8■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-202ENST00000438068 2262 ntTSL 218.58■□□□□ 0.578e-7■□□□□ 9.2
LIN28BQ6ZN17 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.41■□□□□ 0.548e-7■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.84■□□□□ 0.458e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-203ENST00000420199 1002 ntTSL 317.74■□□□□ 0.431e-8■□□□□ 9.2
LIN28BQ6ZN17 ATIC-208ENST00000444305 569 ntTSL 417.53■□□□□ 0.48e-7■□□□□ 9.2
LIN28BQ6ZN17 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.398e-7■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.368e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-215ENST00000623163 851 ntTSL 516.7■□□□□ 0.261e-8■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.2■□□□□ 0.188e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-206ENST00000594067 2697 ntTSL 215.94■□□□□ 0.148e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-209ENST00000435947 696 ntTSL 215.81■□□□□ 0.121e-8■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-202ENST00000461349 783 ntTSL 315.04■□□□□ -08e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.018e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-211ENST00000476336 589 ntTSL 214.9□□□□□ -0.028e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-207ENST00000420709 705 ntAPPRIS ALT2 TSL 214.85□□□□□ -0.038e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-212ENST00000485532 709 ntTSL 314.57□□□□□ -0.088e-7■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-204ENST00000461762 2390 ntTSL 214.49□□□□□ -0.098e-7■□□□□ 9.2
LIN28BQ6ZN17 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.121e-8■□□□□ 9.2
LIN28BQ6ZN17 UBR4-211ENST00000467272 891 ntTSL 514.29□□□□□ -0.128e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-204ENST00000403441 567 ntAPPRIS ALT2 TSL 314.27□□□□□ -0.138e-7■□□□□ 9.2
Retrieved 100 of 21,972 protein–RNA pairs in 633.6 ms