RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 NISCHQ9Y2I1 1504 aa33.84■■■■□ 3.01
LIG1-206ENST00000594067 SHROOM4Q9ULL8 1493 aa29.07■■■□□ 2.24
LIG1-206ENST00000594067 ZCCHC6Q5VYS8 1495 aaKnown RBP28.64■■■□□ 2.18
LIG1-206ENST00000594067 CCDC180Q9P1Z9 1646 aa28.64■■■□□ 2.18
LIG1-206ENST00000594067 SUPT5HO00267 1087 aaKnown RBP28.56■■■□□ 2.16
LIG1-206ENST00000594067 DCAF8L2P0C7V8 631 aa28.18■■■□□ 2.1
LIG1-206ENST00000594067 CHIC1Q5VXU3 224 aa27.78■■■□□ 2.04
LIG1-206ENST00000594067 DCAF1Q9Y4B6 1507 aa27.71■■■□□ 2.03
LIG1-206ENST00000594067 MYO15BQ96JP2 1530 aa27.7■■■□□ 2.02
LIG1-206ENST00000594067 HRCP23327 699 aa27.29■■□□□ 1.96
LIG1-206ENST00000594067 PCGF6Q9BYE7 350 aa27.07■■□□□ 1.92
LIG1-206ENST00000594067 ABCC9O60706 1549 aa27.04■■□□□ 1.92
LIG1-206ENST00000594067 LOC105371045A0A1W2PR82 267 aa27.01■■□□□ 1.91
LIG1-206ENST00000594067 SCRIBQ14160 1630 aa26.97■■□□□ 1.91
LIG1-206ENST00000594067 RSF1Q96T23 1441 aaPredicted RBP26.86■■□□□ 1.89
LIG1-206ENST00000594067 PPARGC1BQ86YN6 1023 aaKnown RBP26.67■■□□□ 1.86
LIG1-206ENST00000594067 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
LIG1-206ENST00000594067 TRIM41Q8WV44 630 aa26.56■■□□□ 1.84
LIG1-206ENST00000594067 NACADO15069 1562 aa26.49■■□□□ 1.83
LIG1-206ENST00000594067 TRIM26Q12899 539 aaPredicted RBP26.49■■□□□ 1.83
LIG1-206ENST00000594067 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
LIG1-206ENST00000594067 FAM9AQ8IZU1 332 aaPredicted RBP26.41■■□□□ 1.82
LIG1-206ENST00000594067 MROH2BQ7Z745 1585 aa26.35■■□□□ 1.81
LIG1-206ENST00000594067 EHMT2Q96KQ7 1210 aa26.22■■□□□ 1.79
LIG1-206ENST00000594067 WIZO95785 1651 aa26.2■■□□□ 1.78
LIG1-206ENST00000594067 BAZ1AQ9NRL2 1556 aaPredicted RBP26.01■■□□□ 1.75
LIG1-206ENST00000594067 ZEB1P37275 1124 aaPredicted RBP25.93■■□□□ 1.74
LIG1-206ENST00000594067 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
LIG1-206ENST00000594067 TOP2AP11388 1531 aaKnown RBP25.76■■□□□ 1.71
LIG1-206ENST00000594067 SMARCA4P51532 1647 aa25.74■■□□□ 1.71
LIG1-206ENST00000594067 CCDC88BA6NC98 1476 aa25.71■■□□□ 1.71
LIG1-206ENST00000594067 ABCC8Q09428 1581 aa25.69■■□□□ 1.7
LIG1-206ENST00000594067 SMARCA2P51531 1590 aa25.64■■□□□ 1.7
LIG1-206ENST00000594067 UNC13AQ9UPW8 1703 aa25.64■■□□□ 1.69
LIG1-206ENST00000594067 PABPN1Q86U42 306 aaKnown RBP eCLIP25.5■■□□□ 1.672e-6■■■■□ 25.6
LIG1-206ENST00000594067 SOGA1O94964 1423 aa25.49■■□□□ 1.67
LIG1-206ENST00000594067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
LIG1-206ENST00000594067 SCAF1Q9H7N4 1312 aaKnown RBP25.45■■□□□ 1.66
LIG1-206ENST00000594067 PELP1Q8IZL8 1130 aaKnown RBP25.41■■□□□ 1.66
LIG1-206ENST00000594067 CEP162Q5TB80 1403 aa25.4■■□□□ 1.66
LIG1-206ENST00000594067 TTBK1Q5TCY1 1321 aaPredicted RBP25.4■■□□□ 1.66
LIG1-206ENST00000594067 CCER1Q8TC90 406 aaPredicted RBP25.38■■□□□ 1.65
LIG1-206ENST00000594067 WRNQ14191 1432 aaPredicted RBP eCLIP25.37■■□□□ 1.65
LIG1-206ENST00000594067 RUSC2Q8N2Y8 1516 aa25.36■■□□□ 1.65
LIG1-206ENST00000594067 CSRNP3Q8WYN3 585 aa25.36■■□□□ 1.65
LIG1-206ENST00000594067 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
LIG1-206ENST00000594067 TNIKQ9UKE5 1360 aa25.35■■□□□ 1.65
LIG1-206ENST00000594067 EEA1Q15075 1411 aa25.31■■□□□ 1.64
LIG1-206ENST00000594067 UBTFP17480 764 aaKnown RBP25.3■■□□□ 1.64
LIG1-206ENST00000594067 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
LIG1-206ENST00000594067 GOLGA3Q08378 1498 aa25.18■■□□□ 1.62
LIG1-206ENST00000594067 SYNJ1O43426 1573 aa25.09■■□□□ 1.61
LIG1-206ENST00000594067 ATAD2BQ9ULI0 1458 aa25.08■■□□□ 1.61
LIG1-206ENST00000594067 ACIN1Q9UKV3 1341 aaKnown RBP25.04■■□□□ 1.6
LIG1-206ENST00000594067 BAZ1BQ9UIG0 1483 aaKnown RBP25.03■■□□□ 1.6
LIG1-206ENST00000594067 CEP164Q9UPV0 1460 aa25.01■■□□□ 1.59
LIG1-206ENST00000594067 NEUROD1Q13562 356 aa24.98■■□□□ 1.59
LIG1-206ENST00000594067 KIF21BO75037 1637 aa24.94■■□□□ 1.58
LIG1-206ENST00000594067 DIEXFQ68CQ4 756 aaKnown RBP24.93■■□□□ 1.58
LIG1-206ENST00000594067 CLIP1P30622 1438 aa24.91■■□□□ 1.58
LIG1-206ENST00000594067 RAPGEF2Q9Y4G8 1499 aa24.84■■□□□ 1.57
LIG1-206ENST00000594067 RANGAP1P46060 587 aaPredicted RBP24.83■■□□□ 1.57
LIG1-206ENST00000594067 HNRNPUL2Q1KMD3 747 aaKnown RBP24.83■■□□□ 1.57
LIG1-206ENST00000594067 VPS8Q8N3P4 1428 aa24.8■■□□□ 1.56
LIG1-206ENST00000594067 CENPBP07199 599 aaPredicted RBP24.77■■□□□ 1.56
LIG1-206ENST00000594067 GTF3C3Q9Y5Q9 886 aa24.76■■□□□ 1.55
LIG1-206ENST00000594067 APLP2Q06481 763 aa24.75■■□□□ 1.55
LIG1-206ENST00000594067 TOP2BQ02880 1626 aa24.74■■□□□ 1.55
LIG1-206ENST00000594067 ZNF316A6NFI3 1004 aaPredicted RBP24.71■■□□□ 1.55
LIG1-206ENST00000594067 BIVM-ERCC5R4GMW8 1640 aa24.62■■□□□ 1.53
LIG1-206ENST00000594067 PRXQ9BXM0 1461 aa24.56■■□□□ 1.52
LIG1-206ENST00000594067 NCAPD3P42695 1498 aa24.55■■□□□ 1.52
LIG1-206ENST00000594067 ERICH3Q5RHP9 1530 aa24.53■■□□□ 1.52
LIG1-206ENST00000594067 HMGXB3Q12766 1538 aa24.52■■□□□ 1.52
LIG1-206ENST00000594067 CUX1P39880 1505 aa24.51■■□□□ 1.51
LIG1-206ENST00000594067 ARAP1Q96P48 1450 aa24.49■■□□□ 1.51
LIG1-206ENST00000594067 KIF27Q86VH2 1401 aa24.43■■□□□ 1.5
LIG1-206ENST00000594067 KANK4Q5T7N3 995 aaPredicted RBP24.43■■□□□ 1.5
LIG1-206ENST00000594067 CFTRP13569 1480 aa24.39■■□□□ 1.5
LIG1-206ENST00000594067 YTHDC1Q96MU7 727 aaKnown RBP24.39■■□□□ 1.5
LIG1-206ENST00000594067 MIER1Q8N108 512 aa24.39■■□□□ 1.49
LIG1-206ENST00000594067 DHX57Q6P158 1386 aaKnown RBP24.3■■□□□ 1.48
LIG1-206ENST00000594067 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
LIG1-206ENST00000594067 CLSPNQ9HAW4 1339 aa24.24■■□□□ 1.47
LIG1-206ENST00000594067 MYT1Q01538 1121 aa24.24■■□□□ 1.47
LIG1-206ENST00000594067 RRBP1Q9P2E9 1410 aaKnown RBP24.23■■□□□ 1.47
LIG1-206ENST00000594067 CUX2O14529 1486 aa24.2■■□□□ 1.46
LIG1-206ENST00000594067 IGF1RP08069 1367 aa24.18■■□□□ 1.46
LIG1-206ENST00000594067 CCNB3Q8WWL7 1395 aa24.15■■□□□ 1.46
LIG1-206ENST00000594067 ITGAEP38570 1179 aa24.15■■□□□ 1.46
LIG1-206ENST00000594067 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
LIG1-206ENST00000594067 PRDM2Q13029 1718 aa24.1■■□□□ 1.45
LIG1-206ENST00000594067 CARMIL1Q5VZK9 1371 aa24.08■■□□□ 1.45
LIG1-206ENST00000594067 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
LIG1-206ENST00000594067 TIAM1Q13009 1591 aa23.99■■□□□ 1.43
LIG1-206ENST00000594067 RAB3GAP2Q9H2M9 1393 aa23.96■■□□□ 1.43
LIG1-206ENST00000594067 P3H3Q8IVL6 736 aa23.95■■□□□ 1.42
LIG1-206ENST00000594067 MAP3K1Q13233 1512 aa23.93■■□□□ 1.42
LIG1-206ENST00000594067 LRRC9Q6ZRR7 1453 aa23.92■■□□□ 1.42
LIG1-206ENST00000594067 PHLDB1Q86UU1 1377 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms