RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
TRIM28-214ENST00000600840 ABCC9O60706 1549 aa19.99■□□□□ 0.79
TRIM28-214ENST00000600840 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
TRIM28-214ENST00000600840 DNAJC5BQ9UF47 199 aa19.19■□□□□ 0.66
TRIM28-214ENST00000600840 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
TRIM28-214ENST00000600840 PABPN1Q86U42 306 aaKnown RBP eCLIP18.52■□□□□ 0.564e-7■■□□□ 14.5
TRIM28-214ENST00000600840 NACADO15069 1562 aa18.47■□□□□ 0.55
TRIM28-214ENST00000600840 UNC13AQ9UPW8 1703 aa18.45■□□□□ 0.54
TRIM28-214ENST00000600840 DCAF8L2P0C7V8 631 aa18.33■□□□□ 0.52
TRIM28-214ENST00000600840 BICRAQ9NZM4 1560 aa18.29■□□□□ 0.52
TRIM28-214ENST00000600840 CC2D2AQ9P2K1 1620 aa18.03■□□□□ 0.48
TRIM28-214ENST00000600840 CECR2Q9BXF3 1484 aa18.01■□□□□ 0.47
TRIM28-214ENST00000600840 MYO15BQ96JP2 1530 aa18.01■□□□□ 0.47
TRIM28-214ENST00000600840 ZCCHC6Q5VYS8 1495 aaKnown RBP17.92■□□□□ 0.46
TRIM28-214ENST00000600840 DNAJC5Q9H3Z4 198 aa17.89■□□□□ 0.45
TRIM28-214ENST00000600840 EIF4G1Q04637 1599 aaKnown RBP17.84■□□□□ 0.45
TRIM28-214ENST00000600840 SHROOM4Q9ULL8 1493 aa17.84■□□□□ 0.45
TRIM28-214ENST00000600840 DCAF1Q9Y4B6 1507 aa17.8■□□□□ 0.44
TRIM28-214ENST00000600840 SCRIBQ14160 1630 aa17.77■□□□□ 0.44
TRIM28-214ENST00000600840 CUX2O14529 1486 aa17.34■□□□□ 0.37
TRIM28-214ENST00000600840 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
TRIM28-214ENST00000600840 NESP48681 1621 aa17.06■□□□□ 0.32
TRIM28-214ENST00000600840 NCAPD3P42695 1498 aa17.05■□□□□ 0.32
TRIM28-214ENST00000600840 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
TRIM28-214ENST00000600840 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
TRIM28-214ENST00000600840 THOC2Q8NI27 1593 aaKnown RBP16.97■□□□□ 0.31
TRIM28-214ENST00000600840 HMGXB3Q12766 1538 aa16.91■□□□□ 0.3
TRIM28-214ENST00000600840 SMARCA2P51531 1590 aa16.87■□□□□ 0.29
TRIM28-214ENST00000600840 SMARCA4P51532 1647 aa16.87■□□□□ 0.29
TRIM28-214ENST00000600840 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
TRIM28-214ENST00000600840 BAZ1BQ9UIG0 1483 aaKnown RBP16.78■□□□□ 0.28
TRIM28-214ENST00000600840 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.28
TRIM28-214ENST00000600840 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-214ENST00000600840 MROH2BQ7Z745 1585 aa16.7■□□□□ 0.26
TRIM28-214ENST00000600840 PEG3Q9GZU2 1588 aa16.65■□□□□ 0.26
TRIM28-214ENST00000600840 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
TRIM28-214ENST00000600840 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
TRIM28-214ENST00000600840 WDR62O43379 1518 aa16.58■□□□□ 0.24
TRIM28-214ENST00000600840 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
TRIM28-214ENST00000600840 WIZO95785 1651 aa16.51■□□□□ 0.23
TRIM28-214ENST00000600840 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
TRIM28-214ENST00000600840 CEP164Q9UPV0 1460 aa16.42■□□□□ 0.22
TRIM28-214ENST00000600840 RIMBP3CA6NJZ7 1639 aa16.4■□□□□ 0.22
TRIM28-214ENST00000600840 RIMBP3BA6NNM3 1639 aa16.4■□□□□ 0.22
TRIM28-214ENST00000600840 RIMBP3Q9UFD9 1639 aa16.4■□□□□ 0.22
TRIM28-214ENST00000600840 FANCD2Q9BXW9 1451 aa16.37■□□□□ 0.21
TRIM28-214ENST00000600840 RSF1Q96T23 1441 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-214ENST00000600840 URB2Q14146 1524 aaKnown RBP16.3■□□□□ 0.2
TRIM28-214ENST00000600840 ARHGEF11O15085 1522 aa16.27■□□□□ 0.2
TRIM28-214ENST00000600840 CFTRP13569 1480 aa16.24■□□□□ 0.19
TRIM28-214ENST00000600840 TOP2AP11388 1531 aaKnown RBP16.24■□□□□ 0.19
TRIM28-214ENST00000600840 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-214ENST00000600840 CYB5RLQ6IPT4 315 aa16.15■□□□□ 0.18
TRIM28-214ENST00000600840 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-214ENST00000600840 PRDM2Q13029 1718 aa16.11■□□□□ 0.17
TRIM28-214ENST00000600840 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
TRIM28-214ENST00000600840 CHD1O14646 1710 aa16.09■□□□□ 0.17
TRIM28-214ENST00000600840 ARAP1Q96P48 1450 aa16.09■□□□□ 0.17
TRIM28-214ENST00000600840 IFT140Q96RY7 1462 aa16.09■□□□□ 0.17
TRIM28-214ENST00000600840 EIF4G3O43432 1585 aaKnown RBP16.09■□□□□ 0.17
TRIM28-214ENST00000600840 TOPBP1Q92547 1522 aa16.02■□□□□ 0.15
TRIM28-214ENST00000600840 AEBP2Q6ZN18 517 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-214ENST00000600840 AQRO60306 1485 aaKnown RBP eCLIP15.97■□□□□ 0.157e-17■■■■□ 25.6
TRIM28-214ENST00000600840 FBLN2P98095 1184 aa15.94■□□□□ 0.14
TRIM28-214ENST00000600840 TARBP1Q13395 1621 aaKnown RBP15.94■□□□□ 0.14
TRIM28-214ENST00000600840 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
TRIM28-214ENST00000600840 ABCC8Q09428 1581 aa15.86■□□□□ 0.13
TRIM28-214ENST00000600840 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
TRIM28-214ENST00000600840 POLA1P09884 1462 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-214ENST00000600840 RAD54L2Q9Y4B4 1467 aa15.8■□□□□ 0.12
TRIM28-214ENST00000600840 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
TRIM28-214ENST00000600840 TDRD9Q8NDG6 1382 aaKnown RBP15.77■□□□□ 0.12
TRIM28-214ENST00000600840 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
TRIM28-214ENST00000600840 SOGA1O94964 1423 aa15.71■□□□□ 0.11
TRIM28-214ENST00000600840 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
TRIM28-214ENST00000600840 CHMP7Q8WUX9 453 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-214ENST00000600840 GAPVD1Q14C86 1478 aa15.68■□□□□ 0.1
TRIM28-214ENST00000600840 CUX1P39880 1505 aa15.67■□□□□ 0.1
TRIM28-214ENST00000600840 FGD5Q6ZNL6 1462 aa15.66■□□□□ 0.1
TRIM28-214ENST00000600840 MAGI1Q96QZ7 1491 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-214ENST00000600840 WDR97A6NE52 1622 aa15.65■□□□□ 0.1
TRIM28-214ENST00000600840 SYNJ2O15056 1496 aa15.64■□□□□ 0.09
TRIM28-214ENST00000600840 GRIN2BQ13224 1484 aa15.63■□□□□ 0.09
TRIM28-214ENST00000600840 PBRM1Q86U86 1689 aa15.62■□□□□ 0.09
TRIM28-214ENST00000600840 ERCC6L2Q5T890 1561 aa15.62■□□□□ 0.09
TRIM28-214ENST00000600840 KIF13AQ9H1H9 1805 aa15.54■□□□□ 0.08
TRIM28-214ENST00000600840 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
TRIM28-214ENST00000600840 CEP170Q5SW79 1584 aa15.49■□□□□ 0.07
TRIM28-214ENST00000600840 ABCA10Q8WWZ4 1543 aa15.45■□□□□ 0.06
TRIM28-214ENST00000600840 GRIN2AQ12879 1464 aa15.45■□□□□ 0.06
TRIM28-214ENST00000600840 SHROOM2Q13796 1616 aa15.43■□□□□ 0.06
TRIM28-214ENST00000600840 BIVM-ERCC5R4GMW8 1640 aa15.42■□□□□ 0.06
TRIM28-214ENST00000600840 ADAMTS12P58397 1594 aa15.41■□□□□ 0.06
TRIM28-214ENST00000600840 TOP2BQ02880 1626 aa15.4■□□□□ 0.06
TRIM28-214ENST00000600840 ILDR1Q86SU0 546 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-214ENST00000600840 NUP160Q12769 1436 aa15.4■□□□□ 0.06
TRIM28-214ENST00000600840 WRNQ14191 1432 aaPredicted RBP eCLIP15.39■□□□□ 0.05
TRIM28-214ENST00000600840 KDM4FA0A1W2PPD8 638 aa15.35■□□□□ 0.05
TRIM28-214ENST00000600840 FAM69CQ0P6D2 419 aa15.31■□□□□ 0.04
TRIM28-214ENST00000600840 PRG4Q92954 1404 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms