RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 NISCHQ9Y2I1 1504 aa27.52■■■□□ 2
SHMT2-216ENST00000554975 ABCC9O60706 1549 aa25.46■■□□□ 1.67
SHMT2-216ENST00000554975 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
SHMT2-216ENST00000554975 DNAJC5BQ9UF47 199 aa24.38■■□□□ 1.49
SHMT2-216ENST00000554975 RB1CC1Q8TDY2 1594 aa23.95■■□□□ 1.43
SHMT2-216ENST00000554975 NACADO15069 1562 aa23.65■■□□□ 1.38
SHMT2-216ENST00000554975 UNC13AQ9UPW8 1703 aa23.62■■□□□ 1.37
SHMT2-216ENST00000554975 PABPN1Q86U42 306 aaKnown RBP eCLIP23.59■■□□□ 1.37
SHMT2-216ENST00000554975 BICRAQ9NZM4 1560 aa23.39■■□□□ 1.33
SHMT2-216ENST00000554975 DCAF8L2P0C7V8 631 aa23.38■■□□□ 1.33
SHMT2-216ENST00000554975 MYO15BQ96JP2 1530 aa23.12■■□□□ 1.29
SHMT2-216ENST00000554975 CC2D2AQ9P2K1 1620 aa22.99■■□□□ 1.27
SHMT2-216ENST00000554975 CECR2Q9BXF3 1484 aa22.95■■□□□ 1.26
SHMT2-216ENST00000554975 SHROOM4Q9ULL8 1493 aa22.85■■□□□ 1.25
SHMT2-216ENST00000554975 EIF4G1Q04637 1599 aaKnown RBP22.8■■□□□ 1.24
SHMT2-216ENST00000554975 SCRIBQ14160 1630 aa22.75■■□□□ 1.23
SHMT2-216ENST00000554975 ZCCHC6Q5VYS8 1495 aaKnown RBP22.71■■□□□ 1.23
SHMT2-216ENST00000554975 DNAJC5Q9H3Z4 198 aa22.67■■□□□ 1.22
SHMT2-216ENST00000554975 DCAF1Q9Y4B6 1507 aa22.66■■□□□ 1.22
SHMT2-216ENST00000554975 CUX2O14529 1486 aa22.08■■□□□ 1.12
SHMT2-216ENST00000554975 ERCC6Q03468 1493 aa21.95■■□□□ 1.1
SHMT2-216ENST00000554975 NCAPD3P42695 1498 aa21.83■■□□□ 1.08
SHMT2-216ENST00000554975 NESP48681 1621 aa21.77■■□□□ 1.07
SHMT2-216ENST00000554975 ATAD2BQ9ULI0 1458 aa21.72■■□□□ 1.07
SHMT2-216ENST00000554975 THOC2Q8NI27 1593 aaKnown RBP21.65■■□□□ 1.06
SHMT2-216ENST00000554975 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
SHMT2-216ENST00000554975 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
SHMT2-216ENST00000554975 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
SHMT2-216ENST00000554975 KIF21AQ7Z4S6 1674 aa21.52■■□□□ 1.04
SHMT2-216ENST00000554975 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
SHMT2-216ENST00000554975 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
SHMT2-216ENST00000554975 LAMC3Q9Y6N6 1575 aa21.44■■□□□ 1.02
SHMT2-216ENST00000554975 PEG3Q9GZU2 1588 aa21.38■■□□□ 1.01
SHMT2-216ENST00000554975 BAZ1AQ9NRL2 1556 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-216ENST00000554975 PDS5BQ9NTI5 1447 aa21.27■■□□□ 1
SHMT2-216ENST00000554975 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
SHMT2-216ENST00000554975 MRC2Q9UBG0 1479 aa21.19■□□□□ 0.98
SHMT2-216ENST00000554975 WDR62O43379 1518 aa21.18■□□□□ 0.98
SHMT2-216ENST00000554975 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
SHMT2-216ENST00000554975 WIZO95785 1651 aa21.01■□□□□ 0.95
SHMT2-216ENST00000554975 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
SHMT2-216ENST00000554975 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
SHMT2-216ENST00000554975 FANCD2Q9BXW9 1451 aa20.93■□□□□ 0.94
SHMT2-216ENST00000554975 RIMBP3CA6NJZ7 1639 aa20.89■□□□□ 0.93
SHMT2-216ENST00000554975 RIMBP3BA6NNM3 1639 aa20.89■□□□□ 0.93
SHMT2-216ENST00000554975 RIMBP3Q9UFD9 1639 aa20.89■□□□□ 0.93
SHMT2-216ENST00000554975 URB2Q14146 1524 aaKnown RBP20.84■□□□□ 0.93
SHMT2-216ENST00000554975 CFTRP13569 1480 aa20.81■□□□□ 0.92
SHMT2-216ENST00000554975 ARHGEF11O15085 1522 aa20.72■□□□□ 0.91
SHMT2-216ENST00000554975 PRDM2Q13029 1718 aa20.69■□□□□ 0.9
SHMT2-216ENST00000554975 ZNF608Q9ULD9 1512 aaPredicted RBP20.68■□□□□ 0.9
SHMT2-216ENST00000554975 TOP2AP11388 1531 aaKnown RBP20.63■□□□□ 0.89
SHMT2-216ENST00000554975 IFT140Q96RY7 1462 aa20.57■□□□□ 0.88
SHMT2-216ENST00000554975 RSF1Q96T23 1441 aaPredicted RBP20.57■□□□□ 0.88
SHMT2-216ENST00000554975 CHD1O14646 1710 aa20.56■□□□□ 0.88
SHMT2-216ENST00000554975 EIF4G3O43432 1585 aaKnown RBP20.55■□□□□ 0.88
SHMT2-216ENST00000554975 CYB5RLQ6IPT4 315 aa20.53■□□□□ 0.88
SHMT2-216ENST00000554975 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
SHMT2-216ENST00000554975 TOPBP1Q92547 1522 aa20.5■□□□□ 0.87
SHMT2-216ENST00000554975 TRHP20396 242 aaPredicted RBP20.44■□□□□ 0.86
SHMT2-216ENST00000554975 CCDC88BA6NC98 1476 aa20.4■□□□□ 0.86
SHMT2-216ENST00000554975 TARBP1Q13395 1621 aaKnown RBP20.4■□□□□ 0.86
SHMT2-216ENST00000554975 AQRO60306 1485 aaKnown RBP eCLIP20.39■□□□□ 0.853e-7■■■■□ 25.7
SHMT2-216ENST00000554975 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
SHMT2-216ENST00000554975 ABCC8Q09428 1581 aa20.31■□□□□ 0.84
SHMT2-216ENST00000554975 FBLN2P98095 1184 aa20.29■□□□□ 0.84
SHMT2-216ENST00000554975 POLA1P09884 1462 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-216ENST00000554975 CLASP1Q7Z460 1538 aa20.23■□□□□ 0.83
SHMT2-216ENST00000554975 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
SHMT2-216ENST00000554975 AEBP2Q6ZN18 517 aaPredicted RBP20.19■□□□□ 0.82
SHMT2-216ENST00000554975 TDRD9Q8NDG6 1382 aaKnown RBP20.17■□□□□ 0.82
SHMT2-216ENST00000554975 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
SHMT2-216ENST00000554975 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
SHMT2-216ENST00000554975 SOGA1O94964 1423 aa20.1■□□□□ 0.81
SHMT2-216ENST00000554975 FGD5Q6ZNL6 1462 aa20.06■□□□□ 0.8
SHMT2-216ENST00000554975 WDR97A6NE52 1622 aa20.05■□□□□ 0.8
SHMT2-216ENST00000554975 MAGI1Q96QZ7 1491 aaPredicted RBP20.05■□□□□ 0.8
SHMT2-216ENST00000554975 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
SHMT2-216ENST00000554975 PBRM1Q86U86 1689 aa20■□□□□ 0.79
SHMT2-216ENST00000554975 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
SHMT2-216ENST00000554975 SYNJ2O15056 1496 aa19.99■□□□□ 0.79
SHMT2-216ENST00000554975 CUX1P39880 1505 aa19.99■□□□□ 0.79
SHMT2-216ENST00000554975 GRIN2BQ13224 1484 aa19.99■□□□□ 0.79
SHMT2-216ENST00000554975 ERCC6L2Q5T890 1561 aa19.95■□□□□ 0.78
SHMT2-216ENST00000554975 ABCA5Q8WWZ7 1642 aa19.86■□□□□ 0.77
SHMT2-216ENST00000554975 KIF13AQ9H1H9 1805 aa19.86■□□□□ 0.77
SHMT2-216ENST00000554975 CEP170Q5SW79 1584 aa19.79■□□□□ 0.76
SHMT2-216ENST00000554975 ABCA10Q8WWZ4 1543 aa19.77■□□□□ 0.76
SHMT2-216ENST00000554975 GRIN2AQ12879 1464 aa19.77■□□□□ 0.76
SHMT2-216ENST00000554975 SHROOM2Q13796 1616 aa19.75■□□□□ 0.75
SHMT2-216ENST00000554975 ADAMTS12P58397 1594 aa19.74■□□□□ 0.75
SHMT2-216ENST00000554975 NUP160Q12769 1436 aa19.71■□□□□ 0.75
SHMT2-216ENST00000554975 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
SHMT2-216ENST00000554975 PRG4Q92954 1404 aaPredicted RBP19.55■□□□□ 0.72
SHMT2-216ENST00000554975 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
SHMT2-216ENST00000554975 DIP2BQ9P265 1576 aa19.54■□□□□ 0.72
SHMT2-216ENST00000554975 ABCC10Q5T3U5 1492 aa19.54■□□□□ 0.72
SHMT2-216ENST00000554975 WRNQ14191 1432 aaPredicted RBP eCLIP19.53■□□□□ 0.72
SHMT2-216ENST00000554975 KDM4FA0A1W2PPD8 638 aa19.52■□□□□ 0.72
SHMT2-216ENST00000554975 TSPOAP1O95153 1857 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms