RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NISCHQ9Y2I1 1504 aa28.05■■■□□ 2.08
SHMT2-229ENST00000557348 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
SHMT2-229ENST00000557348 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
SHMT2-229ENST00000557348 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
SHMT2-229ENST00000557348 MYO15BQ96JP2 1530 aa23.01■■□□□ 1.27
SHMT2-229ENST00000557348 ABCC9O60706 1549 aa22.96■■□□□ 1.27
SHMT2-229ENST00000557348 DCAF8L2P0C7V8 631 aa22.95■■□□□ 1.26
SHMT2-229ENST00000557348 SHROOM4Q9ULL8 1493 aa22.83■■□□□ 1.24
SHMT2-229ENST00000557348 NACADO15069 1562 aa22.73■■□□□ 1.23
SHMT2-229ENST00000557348 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
SHMT2-229ENST00000557348 SCRIBQ14160 1630 aa22.34■■□□□ 1.17
SHMT2-229ENST00000557348 SUPT5HO00267 1087 aaKnown RBP22.11■■□□□ 1.13
SHMT2-229ENST00000557348 UNC13AQ9UPW8 1703 aa21.82■■□□□ 1.08
SHMT2-229ENST00000557348 RSF1Q96T23 1441 aaPredicted RBP21.8■■□□□ 1.08
SHMT2-229ENST00000557348 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-229ENST00000557348 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
SHMT2-229ENST00000557348 BICRAQ9NZM4 1560 aa21.65■■□□□ 1.06
SHMT2-229ENST00000557348 MROH2BQ7Z745 1585 aa21.6■■□□□ 1.05
SHMT2-229ENST00000557348 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
SHMT2-229ENST00000557348 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.02
SHMT2-229ENST00000557348 WIZO95785 1651 aa21.4■■□□□ 1.02
SHMT2-229ENST00000557348 CHIC1Q5VXU3 224 aa21.32■■□□□ 1
SHMT2-229ENST00000557348 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
SHMT2-229ENST00000557348 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
SHMT2-229ENST00000557348 SMARCA2P51531 1590 aa21.19■□□□□ 0.98
SHMT2-229ENST00000557348 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
SHMT2-229ENST00000557348 ATAD2BQ9ULI0 1458 aa21.11■□□□□ 0.97
SHMT2-229ENST00000557348 EIF4G1Q04637 1599 aaKnown RBP21.04■□□□□ 0.96
SHMT2-229ENST00000557348 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
SHMT2-229ENST00000557348 BAZ1BQ9UIG0 1483 aaKnown RBP21.03■□□□□ 0.96
SHMT2-229ENST00000557348 HMGXB3Q12766 1538 aa20.97■□□□□ 0.95
SHMT2-229ENST00000557348 NCAPD3P42695 1498 aa20.95■□□□□ 0.94
SHMT2-229ENST00000557348 TRIM41Q8WV44 630 aa20.88■□□□□ 0.93
SHMT2-229ENST00000557348 CC2D2AQ9P2K1 1620 aa20.78■□□□□ 0.92
SHMT2-229ENST00000557348 ABCC8Q09428 1581 aa20.58■□□□□ 0.88
SHMT2-229ENST00000557348 WRNQ14191 1432 aaPredicted RBP eCLIP20.56■□□□□ 0.88
SHMT2-229ENST00000557348 CFTRP13569 1480 aa20.52■□□□□ 0.88
SHMT2-229ENST00000557348 EEA1Q15075 1411 aa20.51■□□□□ 0.87
SHMT2-229ENST00000557348 PRDM2Q13029 1718 aa20.41■□□□□ 0.86
SHMT2-229ENST00000557348 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
SHMT2-229ENST00000557348 LOC105371045A0A1W2PR82 267 aa20.39■□□□□ 0.86
SHMT2-229ENST00000557348 SYNJ1O43426 1573 aa20.38■□□□□ 0.85
SHMT2-229ENST00000557348 TOP2BQ02880 1626 aa20.37■□□□□ 0.85
SHMT2-229ENST00000557348 FAM9AQ8IZU1 332 aaPredicted RBP20.35■□□□□ 0.85
SHMT2-229ENST00000557348 BIVM-ERCC5R4GMW8 1640 aa20.34■□□□□ 0.85
SHMT2-229ENST00000557348 SOGA1O94964 1423 aa20.26■□□□□ 0.83
SHMT2-229ENST00000557348 LAMC3Q9Y6N6 1575 aa20.22■□□□□ 0.83
SHMT2-229ENST00000557348 CSRNP3Q8WYN3 585 aa20.22■□□□□ 0.83
SHMT2-229ENST00000557348 CUX1P39880 1505 aa20.2■□□□□ 0.82
SHMT2-229ENST00000557348 FANCD2Q9BXW9 1451 aa20.15■□□□□ 0.82
SHMT2-229ENST00000557348 GOLGA3Q08378 1498 aa20.13■□□□□ 0.81
SHMT2-229ENST00000557348 CEP164Q9UPV0 1460 aa20.13■□□□□ 0.81
SHMT2-229ENST00000557348 KIF21BO75037 1637 aa20.13■□□□□ 0.81
SHMT2-229ENST00000557348 RUSC2Q8N2Y8 1516 aa20.1■□□□□ 0.81
SHMT2-229ENST00000557348 TNIKQ9UKE5 1360 aa20.1■□□□□ 0.81
SHMT2-229ENST00000557348 PDS5BQ9NTI5 1447 aa20.07■□□□□ 0.8
SHMT2-229ENST00000557348 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
SHMT2-229ENST00000557348 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
SHMT2-229ENST00000557348 NESP48681 1621 aa20■□□□□ 0.79
SHMT2-229ENST00000557348 HRCP23327 699 aa20■□□□□ 0.79
SHMT2-229ENST00000557348 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
SHMT2-229ENST00000557348 FGD5Q6ZNL6 1462 aa19.98■□□□□ 0.79
SHMT2-229ENST00000557348 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
SHMT2-229ENST00000557348 TOPBP1Q92547 1522 aa19.95■□□□□ 0.78
SHMT2-229ENST00000557348 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
SHMT2-229ENST00000557348 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
SHMT2-229ENST00000557348 PRXQ9BXM0 1461 aa19.94■□□□□ 0.78
SHMT2-229ENST00000557348 CUX2O14529 1486 aa19.89■□□□□ 0.77
SHMT2-229ENST00000557348 ABCA10Q8WWZ4 1543 aa19.87■□□□□ 0.77
SHMT2-229ENST00000557348 RAPGEF2Q9Y4G8 1499 aa19.86■□□□□ 0.77
SHMT2-229ENST00000557348 POLA1P09884 1462 aaPredicted RBP19.86■□□□□ 0.77
SHMT2-229ENST00000557348 ERCC6Q03468 1493 aa19.84■□□□□ 0.77
SHMT2-229ENST00000557348 URB2Q14146 1524 aaKnown RBP19.84■□□□□ 0.77
SHMT2-229ENST00000557348 TRIM26Q12899 539 aaPredicted RBP19.83■□□□□ 0.76
SHMT2-229ENST00000557348 KIF21AQ7Z4S6 1674 aa19.8■□□□□ 0.76
SHMT2-229ENST00000557348 IGF1RP08069 1367 aa19.78■□□□□ 0.76
SHMT2-229ENST00000557348 CLIP1P30622 1438 aa19.78■□□□□ 0.76
SHMT2-229ENST00000557348 MRC2Q9UBG0 1479 aa19.77■□□□□ 0.75
SHMT2-229ENST00000557348 PCGF6Q9BYE7 350 aa19.74■□□□□ 0.75
SHMT2-229ENST00000557348 WDR97A6NE52 1622 aa19.73■□□□□ 0.75
SHMT2-229ENST00000557348 RAD54L2Q9Y4B4 1467 aa19.72■□□□□ 0.75
SHMT2-229ENST00000557348 CARMIL1Q5VZK9 1371 aa19.71■□□□□ 0.75
SHMT2-229ENST00000557348 CUL7Q14999 1698 aa19.71■□□□□ 0.75
SHMT2-229ENST00000557348 VPS8Q8N3P4 1428 aa19.66■□□□□ 0.74
SHMT2-229ENST00000557348 ABCA5Q8WWZ7 1642 aa19.65■□□□□ 0.74
SHMT2-229ENST00000557348 WDR62O43379 1518 aa19.65■□□□□ 0.74
SHMT2-229ENST00000557348 TARBP1Q13395 1621 aaKnown RBP19.61■□□□□ 0.73
SHMT2-229ENST00000557348 PELP1Q8IZL8 1130 aaKnown RBP19.61■□□□□ 0.73
SHMT2-229ENST00000557348 GAPVD1Q14C86 1478 aa19.61■□□□□ 0.73
SHMT2-229ENST00000557348 THOC2Q8NI27 1593 aaKnown RBP19.59■□□□□ 0.73
SHMT2-229ENST00000557348 IFT140Q96RY7 1462 aa19.57■□□□□ 0.72
SHMT2-229ENST00000557348 TDRD9Q8NDG6 1382 aaKnown RBP19.53■□□□□ 0.72
SHMT2-229ENST00000557348 APLP2Q06481 763 aa19.52■□□□□ 0.71
SHMT2-229ENST00000557348 ARAP1Q96P48 1450 aa19.51■□□□□ 0.71
SHMT2-229ENST00000557348 ARHGAP35Q9NRY4 1499 aa19.48■□□□□ 0.71
SHMT2-229ENST00000557348 EFCAB5A4FU69 1503 aa19.47■□□□□ 0.71
SHMT2-229ENST00000557348 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
SHMT2-229ENST00000557348 FHAD1B1AJZ9 1412 aa19.44■□□□□ 0.7
SHMT2-229ENST00000557348 PBRM1Q86U86 1689 aa19.44■□□□□ 0.7
SHMT2-229ENST00000557348 CTTNBP2Q8WZ74 1663 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms