RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 NISCHQ9Y2I1 1504 aa26.15■■□□□ 1.78
SHMT2-220ENST00000555634 CCDC180Q9P1Z9 1646 aa23.26■■□□□ 1.31
SHMT2-220ENST00000555634 ABCC9O60706 1549 aa22.05■■□□□ 1.12
SHMT2-220ENST00000555634 ZCCHC6Q5VYS8 1495 aaKnown RBP21.92■■□□□ 1.1
SHMT2-220ENST00000555634 DCAF1Q9Y4B6 1507 aa21.72■■□□□ 1.07
SHMT2-220ENST00000555634 NACADO15069 1562 aa21.64■■□□□ 1.05
SHMT2-220ENST00000555634 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
SHMT2-220ENST00000555634 RB1CC1Q8TDY2 1594 aa21.59■■□□□ 1.05
SHMT2-220ENST00000555634 DCAF8L2P0C7V8 631 aa21.58■■□□□ 1.05
SHMT2-220ENST00000555634 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
SHMT2-220ENST00000555634 UNC13AQ9UPW8 1703 aa21.14■□□□□ 0.97
SHMT2-220ENST00000555634 SHROOM4Q9ULL8 1493 aa20.89■□□□□ 0.94
SHMT2-220ENST00000555634 BICRAQ9NZM4 1560 aa20.74■□□□□ 0.91
SHMT2-220ENST00000555634 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
SHMT2-220ENST00000555634 BAZ1AQ9NRL2 1556 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-220ENST00000555634 SMARCA4P51532 1647 aa20.27■□□□□ 0.84
SHMT2-220ENST00000555634 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
SHMT2-220ENST00000555634 DNAJC5BQ9UF47 199 aa20.21■□□□□ 0.83
SHMT2-220ENST00000555634 CECR2Q9BXF3 1484 aa20.19■□□□□ 0.82
SHMT2-220ENST00000555634 MROH2BQ7Z745 1585 aa20.12■□□□□ 0.81
SHMT2-220ENST00000555634 SMARCA2P51531 1590 aa20.08■□□□□ 0.8
SHMT2-220ENST00000555634 PEG3Q9GZU2 1588 aa20.04■□□□□ 0.8
SHMT2-220ENST00000555634 CC2D2AQ9P2K1 1620 aa20.03■□□□□ 0.8
SHMT2-220ENST00000555634 RSF1Q96T23 1441 aaPredicted RBP20.02■□□□□ 0.8
SHMT2-220ENST00000555634 WIZO95785 1651 aa20.02■□□□□ 0.8
SHMT2-220ENST00000555634 ATAD2BQ9ULI0 1458 aa19.92■□□□□ 0.78
SHMT2-220ENST00000555634 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
SHMT2-220ENST00000555634 SUPT5HO00267 1087 aaKnown RBP19.9■□□□□ 0.78
SHMT2-220ENST00000555634 BAZ1BQ9UIG0 1483 aaKnown RBP19.9■□□□□ 0.78
SHMT2-220ENST00000555634 TOP2AP11388 1531 aaKnown RBP19.87■□□□□ 0.77
SHMT2-220ENST00000555634 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
SHMT2-220ENST00000555634 PRDM2Q13029 1718 aa19.52■□□□□ 0.72
SHMT2-220ENST00000555634 CCDC88BA6NC98 1476 aa19.5■□□□□ 0.71
SHMT2-220ENST00000555634 LAMC3Q9Y6N6 1575 aa19.39■□□□□ 0.69
SHMT2-220ENST00000555634 DNAJC5Q9H3Z4 198 aa19.28■□□□□ 0.68
SHMT2-220ENST00000555634 CFTRP13569 1480 aa19.28■□□□□ 0.68
SHMT2-220ENST00000555634 CADPSQ9ULU8 1353 aa19.26■□□□□ 0.67
SHMT2-220ENST00000555634 KIF21AQ7Z4S6 1674 aa19.17■□□□□ 0.66
SHMT2-220ENST00000555634 NESP48681 1621 aa19.17■□□□□ 0.66
SHMT2-220ENST00000555634 PDS5BQ9NTI5 1447 aa19.17■□□□□ 0.66
SHMT2-220ENST00000555634 CEP164Q9UPV0 1460 aa19.12■□□□□ 0.65
SHMT2-220ENST00000555634 FANCD2Q9BXW9 1451 aa19.11■□□□□ 0.65
SHMT2-220ENST00000555634 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
SHMT2-220ENST00000555634 ABCC8Q09428 1581 aa19.02■□□□□ 0.63
SHMT2-220ENST00000555634 BIVM-ERCC5R4GMW8 1640 aa18.99■□□□□ 0.63
SHMT2-220ENST00000555634 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
SHMT2-220ENST00000555634 DNMBPQ6XZF7 1577 aa18.97■□□□□ 0.63
SHMT2-220ENST00000555634 MRC2Q9UBG0 1479 aa18.95■□□□□ 0.62
SHMT2-220ENST00000555634 TOP2BQ02880 1626 aa18.94■□□□□ 0.62
SHMT2-220ENST00000555634 THOC2Q8NI27 1593 aaKnown RBP18.93■□□□□ 0.62
SHMT2-220ENST00000555634 SYNJ1O43426 1573 aa18.91■□□□□ 0.62
SHMT2-220ENST00000555634 WDR62O43379 1518 aa18.88■□□□□ 0.61
SHMT2-220ENST00000555634 CUX1P39880 1505 aa18.88■□□□□ 0.61
SHMT2-220ENST00000555634 TOPBP1Q92547 1522 aa18.86■□□□□ 0.61
SHMT2-220ENST00000555634 URB2Q14146 1524 aaKnown RBP18.84■□□□□ 0.61
SHMT2-220ENST00000555634 TRIM41Q8WV44 630 aa18.83■□□□□ 0.6
SHMT2-220ENST00000555634 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
SHMT2-220ENST00000555634 FGD5Q6ZNL6 1462 aa18.77■□□□□ 0.6
SHMT2-220ENST00000555634 WDR97A6NE52 1622 aa18.72■□□□□ 0.59
SHMT2-220ENST00000555634 POLA1P09884 1462 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-220ENST00000555634 CUX2O14529 1486 aa18.67■□□□□ 0.58
SHMT2-220ENST00000555634 IFT140Q96RY7 1462 aa18.65■□□□□ 0.58
SHMT2-220ENST00000555634 TARBP1Q13395 1621 aaKnown RBP18.64■□□□□ 0.57
SHMT2-220ENST00000555634 SOGA1O94964 1423 aa18.62■□□□□ 0.57
SHMT2-220ENST00000555634 ABCA10Q8WWZ4 1543 aa18.61■□□□□ 0.57
SHMT2-220ENST00000555634 EEA1Q15075 1411 aa18.59■□□□□ 0.57
SHMT2-220ENST00000555634 PBRM1Q86U86 1689 aa18.59■□□□□ 0.57
SHMT2-220ENST00000555634 ABCA5Q8WWZ7 1642 aa18.57■□□□□ 0.56
SHMT2-220ENST00000555634 KIF27Q86VH2 1401 aa18.57■□□□□ 0.56
SHMT2-220ENST00000555634 EIF4G3O43432 1585 aaKnown RBP18.56■□□□□ 0.56
SHMT2-220ENST00000555634 RAD54L2Q9Y4B4 1467 aa18.56■□□□□ 0.56
SHMT2-220ENST00000555634 CUL7Q14999 1698 aa18.5■□□□□ 0.55
SHMT2-220ENST00000555634 GAPVD1Q14C86 1478 aa18.47■□□□□ 0.55
SHMT2-220ENST00000555634 ERICH3Q5RHP9 1530 aa18.46■□□□□ 0.55
SHMT2-220ENST00000555634 GRIN2BQ13224 1484 aa18.41■□□□□ 0.54
SHMT2-220ENST00000555634 ZNF608Q9ULD9 1512 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-220ENST00000555634 KIF21BO75037 1637 aa18.4■□□□□ 0.54
SHMT2-220ENST00000555634 TDRD9Q8NDG6 1382 aaKnown RBP18.4■□□□□ 0.54
SHMT2-220ENST00000555634 RUSC2Q8N2Y8 1516 aa18.37■□□□□ 0.53
SHMT2-220ENST00000555634 ADAMTS12P58397 1594 aa18.37■□□□□ 0.53
SHMT2-220ENST00000555634 AQRO60306 1485 aaKnown RBP eCLIP18.36■□□□□ 0.534e-7■■■■□ 22.4
SHMT2-220ENST00000555634 FAM9AQ8IZU1 332 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-220ENST00000555634 MAGI1Q96QZ7 1491 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-220ENST00000555634 SNAPC4Q5SXM2 1469 aa18.32■□□□□ 0.52
SHMT2-220ENST00000555634 CSRNP3Q8WYN3 585 aa18.31■□□□□ 0.52
SHMT2-220ENST00000555634 CTTNBP2Q8WZ74 1663 aa18.28■□□□□ 0.52
SHMT2-220ENST00000555634 GOLGA3Q08378 1498 aa18.28■□□□□ 0.52
SHMT2-220ENST00000555634 CHD1O14646 1710 aa18.28■□□□□ 0.52
SHMT2-220ENST00000555634 FHAD1B1AJZ9 1412 aa18.27■□□□□ 0.52
SHMT2-220ENST00000555634 RAPGEF2Q9Y4G8 1499 aa18.26■□□□□ 0.51
SHMT2-220ENST00000555634 IGF1RP08069 1367 aa18.25■□□□□ 0.51
SHMT2-220ENST00000555634 SYNJ2O15056 1496 aa18.25■□□□□ 0.51
SHMT2-220ENST00000555634 PRXQ9BXM0 1461 aa18.25■□□□□ 0.51
SHMT2-220ENST00000555634 CARMIL1Q5VZK9 1371 aa18.24■□□□□ 0.51
SHMT2-220ENST00000555634 GRIN2AQ12879 1464 aa18.19■□□□□ 0.5
SHMT2-220ENST00000555634 CHMP7Q8WUX9 453 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-220ENST00000555634 UBTFP17480 764 aaKnown RBP18.1■□□□□ 0.49
SHMT2-220ENST00000555634 FBLN2P98095 1184 aa18.1■□□□□ 0.49
SHMT2-220ENST00000555634 IQGAP2Q13576 1575 aa18.09■□□□□ 0.49
SHMT2-220ENST00000555634 EHMT2Q96KQ7 1210 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms