RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 NISCHQ9Y2I1 1504 aa27.75■■■□□ 2.03
SHMT2-205ENST00000553474 CCDC180Q9P1Z9 1646 aa24.55■■□□□ 1.52
SHMT2-205ENST00000553474 ABCC9O60706 1549 aa23.66■■□□□ 1.38
SHMT2-205ENST00000553474 ZCCHC6Q5VYS8 1495 aaKnown RBP23.22■■□□□ 1.31
SHMT2-205ENST00000553474 DCAF8L2P0C7V8 631 aa23.12■■□□□ 1.29
SHMT2-205ENST00000553474 NACADO15069 1562 aa22.92■■□□□ 1.26
SHMT2-205ENST00000553474 DCAF1Q9Y4B6 1507 aa22.92■■□□□ 1.26
SHMT2-205ENST00000553474 RB1CC1Q8TDY2 1594 aa22.9■■□□□ 1.26
SHMT2-205ENST00000553474 MYO15BQ96JP2 1530 aa22.83■■□□□ 1.25
SHMT2-205ENST00000553474 SHROOM4Q9ULL8 1493 aa22.75■■□□□ 1.23
SHMT2-205ENST00000553474 SCRIBQ14160 1630 aa22.52■■□□□ 1.2
SHMT2-205ENST00000553474 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
SHMT2-205ENST00000553474 SUPT5HO00267 1087 aaKnown RBP22.28■■□□□ 1.16
SHMT2-205ENST00000553474 BICRAQ9NZM4 1560 aa22.18■■□□□ 1.14
SHMT2-205ENST00000553474 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
SHMT2-205ENST00000553474 CHIC1Q5VXU3 224 aa21.76■■□□□ 1.07
SHMT2-205ENST00000553474 CECR2Q9BXF3 1484 aa21.61■■□□□ 1.05
SHMT2-205ENST00000553474 EIF4G1Q04637 1599 aaKnown RBP21.58■■□□□ 1.05
SHMT2-205ENST00000553474 RSF1Q96T23 1441 aaPredicted RBP21.54■■□□□ 1.04
SHMT2-205ENST00000553474 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
SHMT2-205ENST00000553474 BAZ1AQ9NRL2 1556 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-205ENST00000553474 MROH2BQ7Z745 1585 aa21.43■■□□□ 1.02
SHMT2-205ENST00000553474 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
SHMT2-205ENST00000553474 WIZO95785 1651 aa21.29■■□□□ 1
SHMT2-205ENST00000553474 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
SHMT2-205ENST00000553474 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
SHMT2-205ENST00000553474 ATAD2BQ9ULI0 1458 aa21.22■□□□□ 0.99
SHMT2-205ENST00000553474 PEG3Q9GZU2 1588 aa21.21■□□□□ 0.99
SHMT2-205ENST00000553474 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
SHMT2-205ENST00000553474 HMGXB3Q12766 1538 aa21.1■□□□□ 0.97
SHMT2-205ENST00000553474 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
SHMT2-205ENST00000553474 TOP2AP11388 1531 aaKnown RBP21.03■□□□□ 0.96
SHMT2-205ENST00000553474 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
SHMT2-205ENST00000553474 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
SHMT2-205ENST00000553474 HRCP23327 699 aa20.79■□□□□ 0.92
SHMT2-205ENST00000553474 CCDC88BA6NC98 1476 aa20.76■□□□□ 0.91
SHMT2-205ENST00000553474 PCGF6Q9BYE7 350 aa20.74■□□□□ 0.91
SHMT2-205ENST00000553474 TRIM26Q12899 539 aaPredicted RBP20.64■□□□□ 0.89
SHMT2-205ENST00000553474 NESP48681 1621 aa20.59■□□□□ 0.89
SHMT2-205ENST00000553474 LAMC3Q9Y6N6 1575 aa20.55■□□□□ 0.88
SHMT2-205ENST00000553474 PRDM2Q13029 1718 aa20.55■□□□□ 0.88
SHMT2-205ENST00000553474 CADPSQ9ULU8 1353 aa20.52■□□□□ 0.88
SHMT2-205ENST00000553474 FAM9AQ8IZU1 332 aaPredicted RBP20.5■□□□□ 0.87
SHMT2-205ENST00000553474 CFTRP13569 1480 aa20.5■□□□□ 0.87
SHMT2-205ENST00000553474 EEA1Q15075 1411 aa20.44■□□□□ 0.86
SHMT2-205ENST00000553474 KIF21AQ7Z4S6 1674 aa20.44■□□□□ 0.86
SHMT2-205ENST00000553474 ABCC8Q09428 1581 aa20.43■□□□□ 0.86
SHMT2-205ENST00000553474 ERCC6Q03468 1493 aa20.37■□□□□ 0.85
SHMT2-205ENST00000553474 PDS5BQ9NTI5 1447 aa20.36■□□□□ 0.85
SHMT2-205ENST00000553474 FANCD2Q9BXW9 1451 aa20.35■□□□□ 0.85
SHMT2-205ENST00000553474 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
SHMT2-205ENST00000553474 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.84
SHMT2-205ENST00000553474 ZEB1P37275 1124 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-205ENST00000553474 TNIKQ9UKE5 1360 aa20.21■□□□□ 0.83
SHMT2-205ENST00000553474 THOC2Q8NI27 1593 aaKnown RBP20.2■□□□□ 0.82
SHMT2-205ENST00000553474 SOGA1O94964 1423 aa20.19■□□□□ 0.82
SHMT2-205ENST00000553474 MRC2Q9UBG0 1479 aa20.17■□□□□ 0.82
SHMT2-205ENST00000553474 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
SHMT2-205ENST00000553474 URB2Q14146 1524 aaKnown RBP20.14■□□□□ 0.81
SHMT2-205ENST00000553474 GOLGA3Q08378 1498 aa20.14■□□□□ 0.81
SHMT2-205ENST00000553474 SYNJ1O43426 1573 aa20.13■□□□□ 0.81
SHMT2-205ENST00000553474 CEP162Q5TB80 1403 aa20.12■□□□□ 0.81
SHMT2-205ENST00000553474 EHMT2Q96KQ7 1210 aa20.11■□□□□ 0.81
SHMT2-205ENST00000553474 KIF21BO75037 1637 aa20.11■□□□□ 0.81
SHMT2-205ENST00000553474 DNMBPQ6XZF7 1577 aa20.11■□□□□ 0.81
SHMT2-205ENST00000553474 WDR62O43379 1518 aa20.09■□□□□ 0.81
SHMT2-205ENST00000553474 CUX1P39880 1505 aa20.09■□□□□ 0.81
SHMT2-205ENST00000553474 TOPBP1Q92547 1522 aa20.08■□□□□ 0.8
SHMT2-205ENST00000553474 TOP2BQ02880 1626 aa20.06■□□□□ 0.8
SHMT2-205ENST00000553474 RUSC2Q8N2Y8 1516 aa20.05■□□□□ 0.8
SHMT2-205ENST00000553474 BIVM-ERCC5R4GMW8 1640 aa20.05■□□□□ 0.8
SHMT2-205ENST00000553474 PPARGC1BQ86YN6 1023 aaKnown RBP20.04■□□□□ 0.8
SHMT2-205ENST00000553474 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
SHMT2-205ENST00000553474 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
SHMT2-205ENST00000553474 POLA1P09884 1462 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-205ENST00000553474 CUX2O14529 1486 aa19.91■□□□□ 0.78
SHMT2-205ENST00000553474 RAD54L2Q9Y4B4 1467 aa19.86■□□□□ 0.77
SHMT2-205ENST00000553474 ERICH3Q5RHP9 1530 aa19.85■□□□□ 0.77
SHMT2-205ENST00000553474 TARBP1Q13395 1621 aaKnown RBP19.84■□□□□ 0.77
SHMT2-205ENST00000553474 WDR97A6NE52 1622 aa19.83■□□□□ 0.76
SHMT2-205ENST00000553474 IFT140Q96RY7 1462 aa19.82■□□□□ 0.76
SHMT2-205ENST00000553474 CLIP1P30622 1438 aa19.81■□□□□ 0.76
SHMT2-205ENST00000553474 RAPGEF2Q9Y4G8 1499 aa19.78■□□□□ 0.76
SHMT2-205ENST00000553474 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
SHMT2-205ENST00000553474 PRXQ9BXM0 1461 aa19.76■□□□□ 0.75
SHMT2-205ENST00000553474 ZNF608Q9ULD9 1512 aaPredicted RBP19.75■□□□□ 0.75
SHMT2-205ENST00000553474 EIF4G3O43432 1585 aaKnown RBP19.74■□□□□ 0.75
SHMT2-205ENST00000553474 ABCA10Q8WWZ4 1543 aa19.74■□□□□ 0.75
SHMT2-205ENST00000553474 KIF27Q86VH2 1401 aa19.71■□□□□ 0.75
SHMT2-205ENST00000553474 TDRD9Q8NDG6 1382 aaKnown RBP19.7■□□□□ 0.74
SHMT2-205ENST00000553474 ABCA5Q8WWZ7 1642 aa19.69■□□□□ 0.74
SHMT2-205ENST00000553474 PBRM1Q86U86 1689 aa19.68■□□□□ 0.74
SHMT2-205ENST00000553474 AQRO60306 1485 aaKnown RBP eCLIP19.67■□□□□ 0.744e-7■■■■□ 20.7
SHMT2-205ENST00000553474 CCER1Q8TC90 406 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-205ENST00000553474 GAPVD1Q14C86 1478 aa19.63■□□□□ 0.73
SHMT2-205ENST00000553474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-205ENST00000553474 APLP2Q06481 763 aa19.59■□□□□ 0.73
SHMT2-205ENST00000553474 GRIN2BQ13224 1484 aa19.56■□□□□ 0.72
SHMT2-205ENST00000553474 SNAPC4Q5SXM2 1469 aa19.53■□□□□ 0.72
SHMT2-205ENST00000553474 ARAP1Q96P48 1450 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms