RNA–Protein interactions for RNA: ENST00000479485.5

SSR1-207, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 2

Gene SSR1, Length 640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-207ENST00000479485 AEBP2Q6ZN18 517 aaPredicted RBP28.05■■■□□ 2.08
SSR1-207ENST00000479485 CHIC1Q5VXU3 224 aa26.02■■□□□ 1.76
SSR1-207ENST00000479485 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
SSR1-207ENST00000479485 PHF23Q9BUL5 403 aaPredicted RBP23.55■■□□□ 1.36
SSR1-207ENST00000479485 POTEDQ86YR6 584 aa22.56■■□□□ 1.2
SSR1-207ENST00000479485 FOXD1Q16676 465 aa22.52■■□□□ 1.2
SSR1-207ENST00000479485 MSH5O43196 834 aa21.32■■□□□ 1
SSR1-207ENST00000479485 PIAS4Q8N2W9 510 aaPredicted RBP20.76■□□□□ 0.91
SSR1-207ENST00000479485 PPP6R1Q9UPN7 881 aa20.37■□□□□ 0.85
SSR1-207ENST00000479485 ADRA2BP18089 450 aa20.23■□□□□ 0.83
SSR1-207ENST00000479485 PLPPR3Q6T4P5 718 aa19.96■□□□□ 0.79
SSR1-207ENST00000479485 CACNB1Q02641 598 aaPredicted RBP18.94■□□□□ 0.62
SSR1-207ENST00000479485 MAPK8IP2Q13387 824 aaPredicted RBP18.91■□□□□ 0.62
SSR1-207ENST00000479485 DMRT2Q9Y5R5 561 aa18.85■□□□□ 0.61
SSR1-207ENST00000479485 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
SSR1-207ENST00000479485 RNF39Q9H2S5 420 aa18.17■□□□□ 0.5
SSR1-207ENST00000479485 DCAF8L1A6NGE4 600 aa18.14■□□□□ 0.49
SSR1-207ENST00000479485 HOXD11P31277 338 aaPredicted RBP17.78■□□□□ 0.44
SSR1-207ENST00000479485 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
SSR1-207ENST00000479485 POTEHQ6S545 545 aa17.46■□□□□ 0.39
SSR1-207ENST00000479485 PPP4R3CPQ6ZMV5 832 aa17.43■□□□□ 0.38
SSR1-207ENST00000479485 RNF216Q9NWF9 866 aaPredicted RBP17.37■□□□□ 0.37
SSR1-207ENST00000479485 CNKSR2Q8WXI2 1034 aa17.28■□□□□ 0.36
SSR1-207ENST00000479485 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
SSR1-207ENST00000479485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.92■□□□□ 0.34e-14■□□□□ 8.2
SSR1-207ENST00000479485 DSG3P32926 999 aa16.71■□□□□ 0.27
SSR1-207ENST00000479485 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
SSR1-207ENST00000479485 CAPN15O75808 1086 aa16.55■□□□□ 0.24
SSR1-207ENST00000479485 U3KPZ7 1027 aaPredicted RBP16.53■□□□□ 0.24
SSR1-207ENST00000479485 NCBP3Q53F19 620 aaKnown RBP16.36■□□□□ 0.21
SSR1-207ENST00000479485 NPM3O75607 178 aaKnown RBP16.25■□□□□ 0.19
SSR1-207ENST00000479485 ABCB7O75027 752 aa16.15■□□□□ 0.18
SSR1-207ENST00000479485 TRHP20396 242 aaPredicted RBP16.08■□□□□ 0.16
SSR1-207ENST00000479485 CHRDL2Q6WN34 429 aa15.97■□□□□ 0.15
SSR1-207ENST00000479485 ZNF219Q9P2Y4 722 aaPredicted RBP15.92■□□□□ 0.14
SSR1-207ENST00000479485 SP7Q8TDD2 431 aaPredicted RBP15.9■□□□□ 0.14
SSR1-207ENST00000479485 RBM42Q9BTD8 480 aaKnown RBP15.85■□□□□ 0.13
SSR1-207ENST00000479485 SLC4A2P04920 1241 aa15.81■□□□□ 0.12
SSR1-207ENST00000479485 APLP2Q06481 763 aa15.76■□□□□ 0.11
SSR1-207ENST00000479485 KCNA4P22459 653 aa15.61■□□□□ 0.09
SSR1-207ENST00000479485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
SSR1-207ENST00000479485 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
SSR1-207ENST00000479485 SAMD1Q6SPF0 538 aaPredicted RBP15.46■□□□□ 0.07
SSR1-207ENST00000479485 POLA2Q14181 598 aa15.43■□□□□ 0.06
SSR1-207ENST00000479485 PIP4P2Q8N4L2 257 aa15.42■□□□□ 0.06
SSR1-207ENST00000479485 HAX1O00165 279 aa15.37■□□□□ 0.05
SSR1-207ENST00000479485 AKT1S1Q96B36 256 aa15.33■□□□□ 0.04
SSR1-207ENST00000479485 REM2Q8IYK8 340 aaPredicted RBP15.24■□□□□ 0.03
SSR1-207ENST00000479485 EVX2Q03828 476 aa15.23■□□□□ 0.03
SSR1-207ENST00000479485 FXR2P51116 673 aaKnown RBP eCLIP15.15■□□□□ 0.027e-7■□□□□ 9.9
SSR1-207ENST00000479485 PITPNM1O00562 1244 aa15.11■□□□□ 0.01
SSR1-207ENST00000479485 OSCARQ8IYS5 282 aa14.99□□□□□ -0.01
SSR1-207ENST00000479485 MYCNP04198 464 aaPredicted RBP14.98□□□□□ -0.01
SSR1-207ENST00000479485 LHX8Q68G74 356 aa14.91□□□□□ -0.02
SSR1-207ENST00000479485 SLC4A1APQ9BWU0 796 aaKnown RBP14.89□□□□□ -0.03
SSR1-207ENST00000479485 ZBTB12Q9Y330 459 aaPredicted RBP14.89□□□□□ -0.03
SSR1-207ENST00000479485 ATF5Q9Y2D1 282 aaPredicted RBP14.87□□□□□ -0.03
SSR1-207ENST00000479485 PLSCR2Q9NRY7 297 aa14.79□□□□□ -0.04
SSR1-207ENST00000479485 GABBR2O75899 941 aa14.75□□□□□ -0.05
SSR1-207ENST00000479485 EHMT2Q96KQ7 1210 aa14.72□□□□□ -0.05
SSR1-207ENST00000479485 C19orf67A6NJJ6 358 aa14.71□□□□□ -0.05
SSR1-207ENST00000479485 PRKAR2AP13861 404 aaKnown RBP14.69□□□□□ -0.06
SSR1-207ENST00000479485 POTEIP0CG38 1075 aa14.49□□□□□ -0.09
SSR1-207ENST00000479485 CLEC11AQ9Y240 323 aa14.49□□□□□ -0.09
SSR1-207ENST00000479485 SPDYE2BA6NHP3 402 aa14.42□□□□□ -0.1
SSR1-207ENST00000479485 SPDYE6P0CI01 402 aa14.42□□□□□ -0.1
SSR1-207ENST00000479485 SPDYE2Q495Y8 402 aa14.42□□□□□ -0.1
SSR1-207ENST00000479485 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
SSR1-207ENST00000479485 SPDYE1Q8NFV5 336 aaPredicted RBP14.4□□□□□ -0.1
SSR1-207ENST00000479485 ZBTB22O15209 634 aa14.39□□□□□ -0.11
SSR1-207ENST00000479485 CHADLQ6NUI6 762 aa14.39□□□□□ -0.11
SSR1-207ENST00000479485 FOXD4L1Q9NU39 408 aa14.32□□□□□ -0.12
SSR1-207ENST00000479485 SSUH2Q9Y2M2 353 aa14.17□□□□□ -0.14
SSR1-207ENST00000479485 FBLN2P98095 1184 aa14.16□□□□□ -0.14
SSR1-207ENST00000479485 CD44P16070 742 aaKnown RBP14.15□□□□□ -0.14
SSR1-207ENST00000479485 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
SSR1-207ENST00000479485 POTEMA6NI47 508 aa14.1□□□□□ -0.15
SSR1-207ENST00000479485 MKRN4PQ13434 485 aaPredicted RBP14.1□□□□□ -0.15
SSR1-207ENST00000479485 OTUD5Q96G74 571 aa14.1□□□□□ -0.15
SSR1-207ENST00000479485 PRR29P0C7W0 189 aa14.08□□□□□ -0.16
SSR1-207ENST00000479485 DCBLD2Q96PD2 775 aa14.08□□□□□ -0.16
SSR1-207ENST00000479485 POTEGQ6S5H5 508 aa14.03□□□□□ -0.16
SSR1-207ENST00000479485 POTEB2H3BUK9 544 aa14□□□□□ -0.17
SSR1-207ENST00000479485 CLCN6P51797 869 aa14□□□□□ -0.17
SSR1-207ENST00000479485 FARP1Q9Y4F1 1045 aaPredicted RBP14□□□□□ -0.17
SSR1-207ENST00000479485 ATXN8OSP0DMR3 200 aa13.92□□□□□ -0.18
SSR1-207ENST00000479485 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
SSR1-207ENST00000479485 ZNF579Q8NAF0 562 aaKnown RBP13.87□□□□□ -0.19
SSR1-207ENST00000479485 GALR2O43603 387 aaPredicted RBP13.84□□□□□ -0.19
SSR1-207ENST00000479485 ZRANB1Q9UGI0 708 aa13.81□□□□□ -0.2
SSR1-207ENST00000479485 PCDH10Q9P2E7 1040 aa13.8□□□□□ -0.2
SSR1-207ENST00000479485 PELP1Q8IZL8 1130 aaKnown RBP13.7□□□□□ -0.22
SSR1-207ENST00000479485 LCE2DQ5TA82 110 aaPredicted RBP13.69□□□□□ -0.22
SSR1-207ENST00000479485 POTEJP0CG39 1038 aa13.65□□□□□ -0.22
SSR1-207ENST00000479485 PHF12Q96QT6 1004 aa13.59□□□□□ -0.23
SSR1-207ENST00000479485 CREBZFQ9NS37 354 aa13.57□□□□□ -0.24
SSR1-207ENST00000479485 FAM163AQ96GL9 167 aaPredicted RBP13.55□□□□□ -0.24
SSR1-207ENST00000479485 METRNQ9UJH8 293 aa13.52□□□□□ -0.25
SSR1-207ENST00000479485 ASTLQ6HA08 431 aaPredicted RBP13.44□□□□□ -0.26
SSR1-207ENST00000479485 MAMSTRQ6ZN01 415 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms