RNA–Protein interactions for RNA: ENST00000467272.6

UBR4-211, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-211ENST00000467272 NISCHQ9Y2I1 1504 aa31.35■■■□□ 2.61
UBR4-211ENST00000467272 ABCC9O60706 1549 aa28.42■■■□□ 2.14
UBR4-211ENST00000467272 CCDC180Q9P1Z9 1646 aa28.2■■■□□ 2.1
UBR4-211ENST00000467272 DNAJC5BQ9UF47 199 aa27.05■■□□□ 1.92
UBR4-211ENST00000467272 RB1CC1Q8TDY2 1594 aa26.95■■□□□ 1.9
UBR4-211ENST00000467272 NACADO15069 1562 aa26.75■■□□□ 1.87
UBR4-211ENST00000467272 MYO15BQ96JP2 1530 aa26.41■■□□□ 1.82
UBR4-211ENST00000467272 PABPN1Q86U42 306 aaKnown RBP eCLIP26.41■■□□□ 1.829e-8■■■□□ 18.8
UBR4-211ENST00000467272 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
UBR4-211ENST00000467272 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
UBR4-211ENST00000467272 BICRAQ9NZM4 1560 aa26.29■■□□□ 1.8
UBR4-211ENST00000467272 DCAF1Q9Y4B6 1507 aa25.95■■□□□ 1.74
UBR4-211ENST00000467272 ZCCHC6Q5VYS8 1495 aaKnown RBP25.94■■□□□ 1.74
UBR4-211ENST00000467272 SHROOM4Q9ULL8 1493 aa25.92■■□□□ 1.74
UBR4-211ENST00000467272 CC2D2AQ9P2K1 1620 aa25.69■■□□□ 1.7
UBR4-211ENST00000467272 CECR2Q9BXF3 1484 aa25.67■■□□□ 1.7
UBR4-211ENST00000467272 EIF4G1Q04637 1599 aaKnown RBP25.6■■□□□ 1.69
UBR4-211ENST00000467272 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
UBR4-211ENST00000467272 DNAJC5Q9H3Z4 198 aa25.01■■□□□ 1.59
UBR4-211ENST00000467272 NCAPD3P42695 1498 aa24.77■■□□□ 1.56
UBR4-211ENST00000467272 CUX2O14529 1486 aa24.67■■□□□ 1.54
UBR4-211ENST00000467272 ATAD2BQ9ULI0 1458 aa24.62■■□□□ 1.53
UBR4-211ENST00000467272 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
UBR4-211ENST00000467272 ERCC6Q03468 1493 aa24.49■■□□□ 1.51
UBR4-211ENST00000467272 SMARCA2P51531 1590 aa24.47■■□□□ 1.51
UBR4-211ENST00000467272 SMARCA4P51532 1647 aa24.46■■□□□ 1.51
UBR4-211ENST00000467272 NESP48681 1621 aa24.38■■□□□ 1.49
UBR4-211ENST00000467272 PEG3Q9GZU2 1588 aa24.33■■□□□ 1.49
UBR4-211ENST00000467272 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
UBR4-211ENST00000467272 BAZ1BQ9UIG0 1483 aaKnown RBP24.27■■□□□ 1.48
UBR4-211ENST00000467272 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.47
UBR4-211ENST00000467272 LAMC3Q9Y6N6 1575 aa24.16■■□□□ 1.46
UBR4-211ENST00000467272 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
UBR4-211ENST00000467272 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
UBR4-211ENST00000467272 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
UBR4-211ENST00000467272 CADPSQ9ULU8 1353 aa23.95■■□□□ 1.42
UBR4-211ENST00000467272 MRC2Q9UBG0 1479 aa23.84■■□□□ 1.41
UBR4-211ENST00000467272 WDR62O43379 1518 aa23.84■■□□□ 1.41
UBR4-211ENST00000467272 WIZO95785 1651 aa23.76■■□□□ 1.39
UBR4-211ENST00000467272 CFTRP13569 1480 aa23.66■■□□□ 1.38
UBR4-211ENST00000467272 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
UBR4-211ENST00000467272 FANCD2Q9BXW9 1451 aa23.63■■□□□ 1.37
UBR4-211ENST00000467272 TRIM41Q8WV44 630 aa23.59■■□□□ 1.37
UBR4-211ENST00000467272 RSF1Q96T23 1441 aaPredicted RBP23.57■■□□□ 1.36
UBR4-211ENST00000467272 URB2Q14146 1524 aaKnown RBP23.5■■□□□ 1.35
UBR4-211ENST00000467272 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
UBR4-211ENST00000467272 OSCARQ8IYS5 282 aa23.45■■□□□ 1.34
UBR4-211ENST00000467272 CCDC88BA6NC98 1476 aa23.25■■□□□ 1.31
UBR4-211ENST00000467272 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
UBR4-211ENST00000467272 IFT140Q96RY7 1462 aa23.24■■□□□ 1.31
UBR4-211ENST00000467272 PRDM2Q13029 1718 aa23.23■■□□□ 1.31
UBR4-211ENST00000467272 TOPBP1Q92547 1522 aa23.18■■□□□ 1.3
UBR4-211ENST00000467272 RIMBP3CA6NJZ7 1639 aa23.17■■□□□ 1.3
UBR4-211ENST00000467272 RIMBP3BA6NNM3 1639 aa23.17■■□□□ 1.3
UBR4-211ENST00000467272 RIMBP3Q9UFD9 1639 aa23.17■■□□□ 1.3
UBR4-211ENST00000467272 ARHGEF11O15085 1522 aa23.1■■□□□ 1.29
UBR4-211ENST00000467272 ABCC8Q09428 1581 aa23.09■■□□□ 1.29
UBR4-211ENST00000467272 EIF4G3O43432 1585 aaKnown RBP23.05■■□□□ 1.28
UBR4-211ENST00000467272 DNMBPQ6XZF7 1577 aa23.05■■□□□ 1.28
UBR4-211ENST00000467272 TARBP1Q13395 1621 aaKnown RBP23.02■■□□□ 1.28
UBR4-211ENST00000467272 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.273e-8■■■■■ 31.5
UBR4-211ENST00000467272 POLA1P09884 1462 aaPredicted RBP22.93■■□□□ 1.26
UBR4-211ENST00000467272 ARAP1Q96P48 1450 aa22.88■■□□□ 1.25
UBR4-211ENST00000467272 CYB5RLQ6IPT4 315 aa22.87■■□□□ 1.25
UBR4-211ENST00000467272 CHD1O14646 1710 aa22.87■■□□□ 1.25
UBR4-211ENST00000467272 RAD54L2Q9Y4B4 1467 aa22.82■■□□□ 1.24
UBR4-211ENST00000467272 SOGA1O94964 1423 aa22.78■■□□□ 1.24
UBR4-211ENST00000467272 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.24
UBR4-211ENST00000467272 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
UBR4-211ENST00000467272 CLASP1Q7Z460 1538 aa22.74■■□□□ 1.23
UBR4-211ENST00000467272 FBLN2P98095 1184 aa22.72■■□□□ 1.23
UBR4-211ENST00000467272 SNAPC4Q5SXM2 1469 aa22.71■■□□□ 1.23
UBR4-211ENST00000467272 FGD5Q6ZNL6 1462 aa22.71■■□□□ 1.23
UBR4-211ENST00000467272 CUX1P39880 1505 aa22.69■■□□□ 1.22
UBR4-211ENST00000467272 MAGI1Q96QZ7 1491 aaPredicted RBP22.67■■□□□ 1.22
UBR4-211ENST00000467272 GRIN2BQ13224 1484 aa22.63■■□□□ 1.21
UBR4-211ENST00000467272 TRHP20396 242 aaPredicted RBP22.61■■□□□ 1.21
UBR4-211ENST00000467272 SYNJ2O15056 1496 aa22.6■■□□□ 1.21
UBR4-211ENST00000467272 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
UBR4-211ENST00000467272 CHMP7Q8WUX9 453 aaPredicted RBP22.58■■□□□ 1.21
UBR4-211ENST00000467272 GAPVD1Q14C86 1478 aa22.5■■□□□ 1.19
UBR4-211ENST00000467272 ABCA10Q8WWZ4 1543 aa22.5■■□□□ 1.19
UBR4-211ENST00000467272 ABCA5Q8WWZ7 1642 aa22.46■■□□□ 1.19
UBR4-211ENST00000467272 PBRM1Q86U86 1689 aa22.43■■□□□ 1.18
UBR4-211ENST00000467272 NUP160Q12769 1436 aa22.35■■□□□ 1.17
UBR4-211ENST00000467272 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
UBR4-211ENST00000467272 ERCC6L2Q5T890 1561 aa22.33■■□□□ 1.17
UBR4-211ENST00000467272 WRNQ14191 1432 aaPredicted RBP eCLIP22.3■■□□□ 1.16
UBR4-211ENST00000467272 ADAMTS12P58397 1594 aa22.29■■□□□ 1.16
UBR4-211ENST00000467272 CEP170Q5SW79 1584 aa22.28■■□□□ 1.16
UBR4-211ENST00000467272 SHROOM2Q13796 1616 aa22.26■■□□□ 1.15
UBR4-211ENST00000467272 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
UBR4-211ENST00000467272 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
UBR4-211ENST00000467272 BIVM-ERCC5R4GMW8 1640 aa22.22■■□□□ 1.15
UBR4-211ENST00000467272 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
UBR4-211ENST00000467272 AEBP2Q6ZN18 517 aaPredicted RBP22.11■■□□□ 1.13
UBR4-211ENST00000467272 SUPT5HO00267 1087 aaKnown RBP22.1■■□□□ 1.13
UBR4-211ENST00000467272 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
UBR4-211ENST00000467272 JPH4Q96JJ6 628 aa22.04■■□□□ 1.12
UBR4-211ENST00000467272 KIF13AQ9H1H9 1805 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms