RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 NISCHQ9Y2I1 1504 aa25.97■■□□□ 1.75
SHMT2-218ENST00000555213 CCDC180Q9P1Z9 1646 aa23.04■■□□□ 1.28
SHMT2-218ENST00000555213 ABCC9O60706 1549 aa22.29■■□□□ 1.16
SHMT2-218ENST00000555213 ZCCHC6Q5VYS8 1495 aaKnown RBP21.7■■□□□ 1.06
SHMT2-218ENST00000555213 NACADO15069 1562 aa21.61■■□□□ 1.05
SHMT2-218ENST00000555213 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
SHMT2-218ENST00000555213 RB1CC1Q8TDY2 1594 aa21.58■■□□□ 1.05
SHMT2-218ENST00000555213 MYO15BQ96JP2 1530 aa21.55■■□□□ 1.04
SHMT2-218ENST00000555213 DCAF1Q9Y4B6 1507 aa21.52■■□□□ 1.04
SHMT2-218ENST00000555213 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
SHMT2-218ENST00000555213 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
SHMT2-218ENST00000555213 DNAJC5BQ9UF47 199 aa20.86■□□□□ 0.93
SHMT2-218ENST00000555213 BICRAQ9NZM4 1560 aa20.84■□□□□ 0.93
SHMT2-218ENST00000555213 PABPN1Q86U42 306 aaKnown RBP eCLIP20.83■□□□□ 0.93
SHMT2-218ENST00000555213 SHROOM4Q9ULL8 1493 aa20.77■□□□□ 0.92
SHMT2-218ENST00000555213 EIF4G1Q04637 1599 aaKnown RBP20.33■□□□□ 0.84
SHMT2-218ENST00000555213 CC2D2AQ9P2K1 1620 aa20.17■□□□□ 0.82
SHMT2-218ENST00000555213 CECR2Q9BXF3 1484 aa20.16■□□□□ 0.82
SHMT2-218ENST00000555213 BAZ1AQ9NRL2 1556 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-218ENST00000555213 SMARCA4P51532 1647 aa20.12■□□□□ 0.81
SHMT2-218ENST00000555213 MROH2BQ7Z745 1585 aa19.99■□□□□ 0.79
SHMT2-218ENST00000555213 SMARCA2P51531 1590 aa19.98■□□□□ 0.79
SHMT2-218ENST00000555213 ATAD2BQ9ULI0 1458 aa19.93■□□□□ 0.78
SHMT2-218ENST00000555213 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
SHMT2-218ENST00000555213 NCAPD3P42695 1498 aa19.9■□□□□ 0.78
SHMT2-218ENST00000555213 HMGXB3Q12766 1538 aa19.86■□□□□ 0.77
SHMT2-218ENST00000555213 RSF1Q96T23 1441 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-218ENST00000555213 BAZ1BQ9UIG0 1483 aaKnown RBP19.84■□□□□ 0.77
SHMT2-218ENST00000555213 WIZO95785 1651 aa19.78■□□□□ 0.76
SHMT2-218ENST00000555213 TOP2AP11388 1531 aaKnown RBP19.65■□□□□ 0.74
SHMT2-218ENST00000555213 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
SHMT2-218ENST00000555213 DNAJC5Q9H3Z4 198 aa19.5■□□□□ 0.71
SHMT2-218ENST00000555213 LAMC3Q9Y6N6 1575 aa19.37■□□□□ 0.69
SHMT2-218ENST00000555213 CCDC88BA6NC98 1476 aa19.36■□□□□ 0.69
SHMT2-218ENST00000555213 CADPSQ9ULU8 1353 aa19.33■□□□□ 0.69
SHMT2-218ENST00000555213 NESP48681 1621 aa19.32■□□□□ 0.68
SHMT2-218ENST00000555213 CFTRP13569 1480 aa19.27■□□□□ 0.67
SHMT2-218ENST00000555213 ERCC6Q03468 1493 aa19.27■□□□□ 0.67
SHMT2-218ENST00000555213 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
SHMT2-218ENST00000555213 PRDM2Q13029 1718 aa19.14■□□□□ 0.66
SHMT2-218ENST00000555213 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
SHMT2-218ENST00000555213 KIF21AQ7Z4S6 1674 aa19.11■□□□□ 0.65
SHMT2-218ENST00000555213 CEP164Q9UPV0 1460 aa19.11■□□□□ 0.65
SHMT2-218ENST00000555213 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
SHMT2-218ENST00000555213 THOC2Q8NI27 1593 aaKnown RBP19.02■□□□□ 0.64
SHMT2-218ENST00000555213 CUX2O14529 1486 aa19.02■□□□□ 0.63
SHMT2-218ENST00000555213 WDR62O43379 1518 aa18.95■□□□□ 0.62
SHMT2-218ENST00000555213 ABCC8Q09428 1581 aa18.89■□□□□ 0.62
SHMT2-218ENST00000555213 URB2Q14146 1524 aaKnown RBP18.89■□□□□ 0.61
SHMT2-218ENST00000555213 DNMBPQ6XZF7 1577 aa18.86■□□□□ 0.61
SHMT2-218ENST00000555213 TOPBP1Q92547 1522 aa18.84■□□□□ 0.61
SHMT2-218ENST00000555213 WRNQ14191 1432 aaPredicted RBP eCLIP18.75■□□□□ 0.59
SHMT2-218ENST00000555213 CUX1P39880 1505 aa18.75■□□□□ 0.59
SHMT2-218ENST00000555213 IFT140Q96RY7 1462 aa18.7■□□□□ 0.58
SHMT2-218ENST00000555213 POLA1P09884 1462 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-218ENST00000555213 FGD5Q6ZNL6 1462 aa18.69■□□□□ 0.58
SHMT2-218ENST00000555213 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
SHMT2-218ENST00000555213 BIVM-ERCC5R4GMW8 1640 aa18.67■□□□□ 0.58
SHMT2-218ENST00000555213 SYNJ1O43426 1573 aa18.66■□□□□ 0.58
SHMT2-218ENST00000555213 SOGA1O94964 1423 aa18.61■□□□□ 0.57
SHMT2-218ENST00000555213 TARBP1Q13395 1621 aaKnown RBP18.59■□□□□ 0.57
SHMT2-218ENST00000555213 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.56
SHMT2-218ENST00000555213 WDR97A6NE52 1622 aa18.54■□□□□ 0.56
SHMT2-218ENST00000555213 ZNF608Q9ULD9 1512 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-218ENST00000555213 ABCA10Q8WWZ4 1543 aa18.52■□□□□ 0.56
SHMT2-218ENST00000555213 EIF4G3O43432 1585 aaKnown RBP18.51■□□□□ 0.55
SHMT2-218ENST00000555213 TDRD9Q8NDG6 1382 aaKnown RBP18.46■□□□□ 0.55
SHMT2-218ENST00000555213 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.544e-9■■■■□ 26.2
SHMT2-218ENST00000555213 TRIM41Q8WV44 630 aa18.45■□□□□ 0.54
SHMT2-218ENST00000555213 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
SHMT2-218ENST00000555213 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
SHMT2-218ENST00000555213 ABCA5Q8WWZ7 1642 aa18.41■□□□□ 0.54
SHMT2-218ENST00000555213 GRIN2BQ13224 1484 aa18.4■□□□□ 0.54
SHMT2-218ENST00000555213 KIF27Q86VH2 1401 aa18.37■□□□□ 0.53
SHMT2-218ENST00000555213 PBRM1Q86U86 1689 aa18.35■□□□□ 0.53
SHMT2-218ENST00000555213 MAGI1Q96QZ7 1491 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-218ENST00000555213 SNAPC4Q5SXM2 1469 aa18.33■□□□□ 0.53
SHMT2-218ENST00000555213 ERICH3Q5RHP9 1530 aa18.31■□□□□ 0.52
SHMT2-218ENST00000555213 SYNJ2O15056 1496 aa18.26■□□□□ 0.51
SHMT2-218ENST00000555213 ADAMTS12P58397 1594 aa18.25■□□□□ 0.51
SHMT2-218ENST00000555213 FBLN2P98095 1184 aa18.23■□□□□ 0.51
SHMT2-218ENST00000555213 FHAD1B1AJZ9 1412 aa18.23■□□□□ 0.51
SHMT2-218ENST00000555213 CHMP7Q8WUX9 453 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-218ENST00000555213 CHD1O14646 1710 aa18.21■□□□□ 0.51
SHMT2-218ENST00000555213 CUL7Q14999 1698 aa18.21■□□□□ 0.51
SHMT2-218ENST00000555213 IGF1RP08069 1367 aa18.18■□□□□ 0.5
SHMT2-218ENST00000555213 EEA1Q15075 1411 aa18.18■□□□□ 0.5
SHMT2-218ENST00000555213 OSCARQ8IYS5 282 aa18.18■□□□□ 0.5
SHMT2-218ENST00000555213 GRIN2AQ12879 1464 aa18.16■□□□□ 0.5
SHMT2-218ENST00000555213 RUSC2Q8N2Y8 1516 aa18.14■□□□□ 0.49
SHMT2-218ENST00000555213 CARMIL1Q5VZK9 1371 aa18.12■□□□□ 0.49
SHMT2-218ENST00000555213 RAPGEF2Q9Y4G8 1499 aa18.06■□□□□ 0.48
SHMT2-218ENST00000555213 NUP160Q12769 1436 aa18.06■□□□□ 0.48
SHMT2-218ENST00000555213 CSRNP3Q8WYN3 585 aa18.04■□□□□ 0.48
SHMT2-218ENST00000555213 CLASP1Q7Z460 1538 aa18.03■□□□□ 0.48
SHMT2-218ENST00000555213 CEP170Q5SW79 1584 aa18.03■□□□□ 0.48
SHMT2-218ENST00000555213 FAM9AQ8IZU1 332 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-218ENST00000555213 PRXQ9BXM0 1461 aa18.01■□□□□ 0.47
SHMT2-218ENST00000555213 KIAA0586Q9BVV6 1533 aa17.94■□□□□ 0.46
SHMT2-218ENST00000555213 KIF21BO75037 1637 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms