Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ETF1-202ENST00000499810 3874 ntTSL 1 (best) BASIC13.26□□□□□ -0.291e-7■□□□□ 10.4
YBX3P16989 ETF1-201ENST00000360541 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.561e-7■□□□□ 10.4
YBX3P16989 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.782e-10■□□□□ 10.4
YBX3P16989 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.3□□□□□ -1.882e-10■□□□□ 10.4
YBX3P16989 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.812e-6■□□□□ 10.4
YBX3P16989 KLHDC8B-202ENST00000459846 726 ntTSL 318.88■□□□□ 0.612e-6■□□□□ 10.4
YBX3P16989 KLHDC8B-204ENST00000471811 661 ntTSL 216.84■□□□□ 0.292e-6■□□□□ 10.4
YBX3P16989 ERLIN2-206ENST00000519638 1718 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.531e-6■□□□□ 10.4
YBX3P16989 RFC4-206ENST00000427785 485 ntTSL 314.35□□□□□ -0.117e-7■□□□□ 10.4
YBX3P16989 RFC4-209ENST00000448497 453 ntTSL 57.73□□□□□ -1.177e-7■□□□□ 10.4
YBX3P16989 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.059e-14■□□□□ 10.4
YBX3P16989 TIMMDC1-204ENST00000469324 634 ntTSL 318.21■□□□□ 0.513e-6■□□□□ 10.4
YBX3P16989 TIMMDC1-209ENST00000498399 684 ntTSL 26.69□□□□□ -1.343e-6■□□□□ 10.4
YBX3P16989 C19orf48-207ENST00000596655 1639 ntTSL 224.32■■□□□ 1.486e-8■□□□□ 10.4
YBX3P16989 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.586e-8■□□□□ 10.4
YBX3P16989 C19orf48-216ENST00000641834 1718 nt17.92■□□□□ 0.466e-8■□□□□ 10.4
YBX3P16989 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.316e-8■□□□□ 10.4
YBX3P16989 C19orf48-209ENST00000597705 892 ntTSL 316.48■□□□□ 0.236e-8■□□□□ 10.4
YBX3P16989 C19orf48-210ENST00000598463 1844 ntTSL 1 (best)15.79■□□□□ 0.126e-8■□□□□ 10.4
YBX3P16989 C19orf48-205ENST00000596287 827 ntTSL 215.69■□□□□ 0.16e-8■□□□□ 10.4
YBX3P16989 INTS8-206ENST00000520315 487 ntTSL 57.97□□□□□ -1.133e-7■□□□□ 10.4
YBX3P16989 INTS8-208ENST00000520845 554 ntTSL 37.32□□□□□ -1.243e-7■□□□□ 10.4
YBX3P16989 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.541e-6■□□□□ 10.4
YBX3P16989 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.191e-6■□□□□ 10.4
YBX3P16989 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.881e-12■□□□□ 10.4
YBX3P16989 HIST1H2AC-201ENST00000314088 1668 ntTSL 1 (best)20.27■□□□□ 0.841e-12■□□□□ 10.4
YBX3P16989 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.821e-12■□□□□ 10.4
YBX3P16989 CRIM1-203ENST00000426856 667 ntTSL 321.09■□□□□ 0.972e-6■□□□□ 10.4
YBX3P16989 CNBP-210ENST00000512338 502 ntTSL 419.87■□□□□ 0.772e-9■□□□□ 10.4
YBX3P16989 CNBP-209ENST00000507573 641 ntTSL 217.63■□□□□ 0.412e-9■□□□□ 10.4
YBX3P16989 ADGRG6-211ENST00000538281 591 ntTSL 36.07□□□□□ -1.442e-6■□□□□ 10.4
YBX3P16989 CPSF7-223ENST00000544669 1800 ntTSL 513.28□□□□□ -0.282e-7■□□□□ 10.4
YBX3P16989 CPSF7-219ENST00000539952 953 ntTSL 58.46□□□□□ -1.062e-7■□□□□ 10.4
YBX3P16989 CAP1-216ENST00000449311 681 ntTSL 522.91■■□□□ 1.261e-6■□□□□ 10.4
YBX3P16989 CAP1-211ENST00000421589 824 ntTSL 222.01■■□□□ 1.111e-6■□□□□ 10.4
YBX3P16989 CAP1-210ENST00000420216 668 ntTSL 519.48■□□□□ 0.711e-6■□□□□ 10.4
YBX3P16989 CAP1-208ENST00000414893 528 ntTSL 318.92■□□□□ 0.621e-6■□□□□ 10.4
YBX3P16989 CAP1-209ENST00000417287 610 ntTSL 516.38■□□□□ 0.211e-6■□□□□ 10.4
YBX3P16989 CAP1-214ENST00000435719 817 ntTSL 315.92■□□□□ 0.141e-6■□□□□ 10.4
YBX3P16989 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.131e-6■□□□□ 10.4
YBX3P16989 CAP1-207ENST00000414281 772 ntTSL 415.36■□□□□ 0.051e-6■□□□□ 10.4
YBX3P16989 CAP1-204ENST00000372798 1563 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.021e-6■□□□□ 10.4
YBX3P16989 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.161e-6■□□□□ 10.4
YBX3P16989 CAP1-213ENST00000427843 739 ntTSL 512.99□□□□□ -0.331e-6■□□□□ 10.4
YBX3P16989 CAP1-212ENST00000424977 702 ntTSL 511.45□□□□□ -0.581e-6■□□□□ 10.4
YBX3P16989 CAP1-202ENST00000372792 1496 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.651e-6■□□□□ 10.4
YBX3P16989 CAP1-201ENST00000340450 2592 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.731e-6■□□□□ 10.4
YBX3P16989 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.111e-6■□□□□ 10.4
YBX3P16989 CCT5-206ENST00000508451 555 ntTSL 213.8□□□□□ -0.22e-9■□□□□ 10.4
YBX3P16989 CCT5-208ENST00000510326 567 ntTSL 28.55□□□□□ -1.042e-9■□□□□ 10.4
YBX3P16989 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.239e-14■□□□□ 10.4
YBX3P16989 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.299e-14■□□□□ 10.4
YBX3P16989 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.84■■■□□ 2.214e-10■□□□□ 10.4
YBX3P16989 IPO11-210ENST00000507640 458 ntTSL 38.29□□□□□ -1.084e-10■□□□□ 10.4
YBX3P16989 VPS13D-209ENST00000487188 3990 ntTSL 26.25□□□□□ -1.414e-10■□□□□ 10.4
YBX3P16989 AP3S1-202ENST00000395548 1180 ntTSL 1 (best)8.36□□□□□ -1.073e-7■□□□□ 10.4
YBX3P16989 RPS20-203ENST00000519369 824 ntTSL 217.48■□□□□ 0.393e-23■□□□□ 10.4
YBX3P16989 RPS20-202ENST00000518875 671 ntTSL 2 BASIC9.33□□□□□ -0.923e-23■□□□□ 10.4
YBX3P16989 LARS-207ENST00000506231 3707 ntTSL 26.19□□□□□ -1.426e-10■□□□□ 10.4
YBX3P16989 HK1-205ENST00000436817 1042 ntTSL 519.73■□□□□ 0.754e-10■□□□□ 10.4
YBX3P16989 HK1-216ENST00000493591 916 ntTSL 57.75□□□□□ -1.174e-10■□□□□ 10.4
YBX3P16989 SRP68-206ENST00000587864 577 ntTSL 25.58□□□□□ -1.524e-7■□□□□ 10.4
YBX3P16989 SRP68-204ENST00000585539 254 ntTSL 54.8□□□□□ -1.644e-7■□□□□ 10.4
YBX3P16989 SNX5-205ENST00000463050 845 ntTSL 29.14□□□□□ -0.952e-6■□□□□ 10.4
YBX3P16989 CEP57-209ENST00000538158 2632 ntTSL 28.24□□□□□ -1.096e-9■□□□□ 10.4
YBX3P16989 CEP57-203ENST00000535224 760 ntTSL 36.88□□□□□ -1.316e-9■□□□□ 10.4
YBX3P16989 CEP57-202ENST00000325542 3178 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.812e-6■□□□□ 10.4
YBX3P16989 CEP57-201ENST00000325486 3098 ntTSL 1 (best) BASIC9.96□□□□□ -0.822e-6■□□□□ 10.4
YBX3P16989 SLC39A10-205ENST00000430412 4478 ntTSL 26.62□□□□□ -1.351e-6■□□□□ 10.4
YBX3P16989 SLC39A10-209ENST00000465851 2009 ntTSL 54.6□□□□□ -1.671e-6■□□□□ 10.4
YBX3P16989 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.681e-6■□□□□ 10.4
YBX3P16989 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.792e-6■□□□□ 10.4
YBX3P16989 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.851e-6■□□□□ 10.4
YBX3P16989 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.443e-6■□□□□ 10.4
YBX3P16989 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.83■□□□□ 0.133e-6■□□□□ 10.4
YBX3P16989 STX3-208ENST00000641815 3236 ntBASIC5.92□□□□□ -1.463e-6■□□□□ 10.4
YBX3P16989 SLC25A23-212ENST00000601322 526 ntTSL 311□□□□□ -0.653e-6■□□□□ 10.4
YBX3P16989 IQGAP1-210ENST00000560218 544 ntTSL 55.21□□□□□ -1.587e-10■□□□□ 10.4
YBX3P16989 RNFT2-205ENST00000547718 1761 ntTSL 222.78■■□□□ 1.243e-6■□□□□ 10.4
YBX3P16989 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.39■□□□□ 0.693e-6■□□□□ 10.4
YBX3P16989 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.03■□□□□ 0.643e-6■□□□□ 10.4
YBX3P16989 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.56■□□□□ 0.563e-6■□□□□ 10.4
YBX3P16989 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.223e-6■□□□□ 10.4
YBX3P16989 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.078e-9■□□□□ 10.4
YBX3P16989 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.18e-9■□□□□ 10.4
YBX3P16989 RNASEH2A-203ENST00000590279 696 ntTSL 331.51■■■□□ 2.633e-6■□□□□ 10.4
YBX3P16989 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.79■■■□□ 2.522e-6■□□□□ 10.4
YBX3P16989 RNASEH2A-202ENST00000590121 859 ntTSL 225.92■■□□□ 1.743e-6■□□□□ 10.4
YBX3P16989 RNASEH2A-205ENST00000639767 647 ntTSL 521.79■■□□□ 1.083e-6■□□□□ 10.4
YBX3P16989 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.58■■□□□ 1.052e-6■□□□□ 10.4
YBX3P16989 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.149e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.984e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.83■□□□□ 0.444e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC8.79□□□□□ -14e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-207ENST00000478963 587 ntTSL 28.57□□□□□ -1.044e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-205ENST00000460085 558 ntTSL 27.62□□□□□ -1.194e-8■□□□□ 10.4
YBX3P16989 ATP6V1E1-204ENST00000413576 800 ntTSL 36.73□□□□□ -1.334e-8■□□□□ 10.4
YBX3P16989 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.61e-7■□□□□ 10.4
YBX3P16989 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC23.39■■□□□ 1.331e-7■□□□□ 10.4
YBX3P16989 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.54□□□□□ -1.521e-6■□□□□ 10.4
Retrieved 100 of 29,075 protein–RNA pairs in 234 ms