RNA–Protein interactions for RNA: ENST00000519860.3

ERGIC1-206, Transcript of endoplasmic reticulum-golgi intermediate compartment 1, humanhuman

TSL 3 BASIC

Gene ERGIC1, Length 1,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC1-206ENST00000519860 NISCHQ9Y2I1 1504 aa56.56■■■■■ 6.64
ERGIC1-206ENST00000519860 CCDC180Q9P1Z9 1646 aa50.56■■■■■ 5.68
ERGIC1-206ENST00000519860 ABCC9O60706 1549 aa50.38■■■■■ 5.66
ERGIC1-206ENST00000519860 RB1CC1Q8TDY2 1594 aa48■■■■■ 5.28
ERGIC1-206ENST00000519860 DCAF8L2P0C7V8 631 aa47.74■■■■■ 5.23
ERGIC1-206ENST00000519860 NACADO15069 1562 aa47.73■■■■■ 5.23
ERGIC1-206ENST00000519860 MYO15BQ96JP2 1530 aa47.13■■■■■ 5.14
ERGIC1-206ENST00000519860 PABPN1Q86U42 306 aaKnown RBP eCLIP46.99■■■■■ 5.11
ERGIC1-206ENST00000519860 DNAJC5BQ9UF47 199 aa46.95■■■■■ 5.11
ERGIC1-206ENST00000519860 ZCCHC6Q5VYS8 1495 aaKnown RBP46.95■■■■■ 5.11
ERGIC1-206ENST00000519860 UNC13AQ9UPW8 1703 aa46.94■■■■■ 5.11
ERGIC1-206ENST00000519860 DCAF1Q9Y4B6 1507 aa46.67■■■■■ 5.06
ERGIC1-206ENST00000519860 BICRAQ9NZM4 1560 aa46.61■■■■■ 5.05
ERGIC1-206ENST00000519860 SCRIBQ14160 1630 aa46.22■■■■■ 4.99
ERGIC1-206ENST00000519860 SHROOM4Q9ULL8 1493 aa45.92■■■■■ 4.94
ERGIC1-206ENST00000519860 CC2D2AQ9P2K1 1620 aa45.47■■■■■ 4.87
ERGIC1-206ENST00000519860 EIF4G1Q04637 1599 aaKnown RBP45.45■■■■■ 4.87
ERGIC1-206ENST00000519860 CECR2Q9BXF3 1484 aa45.3■■■■■ 4.84
ERGIC1-206ENST00000519860 NCAPD3P42695 1498 aa44.07■■■■■ 4.65
ERGIC1-206ENST00000519860 SMARCA4P51532 1647 aa44.06■■■■■ 4.64
ERGIC1-206ENST00000519860 ATAD2BQ9ULI0 1458 aa44.02■■■■■ 4.64
ERGIC1-206ENST00000519860 SMARCA2P51531 1590 aa43.89■■■■■ 4.62
ERGIC1-206ENST00000519860 BAZ1AQ9NRL2 1556 aaPredicted RBP43.88■■■■■ 4.61
ERGIC1-206ENST00000519860 HMGXB3Q12766 1538 aa43.78■■■■■ 4.6
ERGIC1-206ENST00000519860 BAZ1BQ9UIG0 1483 aaKnown RBP43.64■■■■■ 4.58
ERGIC1-206ENST00000519860 MROH2BQ7Z745 1585 aa43.63■■■■■ 4.58
ERGIC1-206ENST00000519860 PEG3Q9GZU2 1588 aa43.58■■■■■ 4.57
ERGIC1-206ENST00000519860 ERCC6Q03468 1493 aa43.46■■■■■ 4.55
ERGIC1-206ENST00000519860 NESP48681 1621 aa43.37■■■■■ 4.53
ERGIC1-206ENST00000519860 CUX2O14529 1486 aa43.18■■■■■ 4.5
ERGIC1-206ENST00000519860 WIZO95785 1651 aa43.13■■■■■ 4.49
ERGIC1-206ENST00000519860 LAMC3Q9Y6N6 1575 aa43.03■■■■■ 4.48
ERGIC1-206ENST00000519860 RSF1Q96T23 1441 aaPredicted RBP42.84■■■■■ 4.45
ERGIC1-206ENST00000519860 DNAJC5Q9H3Z4 198 aa42.81■■■■■ 4.44
ERGIC1-206ENST00000519860 THOC2Q8NI27 1593 aaKnown RBP42.8■■■■■ 4.44
ERGIC1-206ENST00000519860 KIF21AQ7Z4S6 1674 aa42.79■■■■■ 4.44
ERGIC1-206ENST00000519860 PDS5BQ9NTI5 1447 aa42.79■■■■■ 4.44
ERGIC1-206ENST00000519860 CADPSQ9ULU8 1353 aa42.78■■■■■ 4.44
ERGIC1-206ENST00000519860 TOP2AP11388 1531 aaKnown RBP42.57■■■■■ 4.41
ERGIC1-206ENST00000519860 MRC2Q9UBG0 1479 aa42.42■■■■■ 4.38
ERGIC1-206ENST00000519860 CFTRP13569 1480 aa42.35■■■■■ 4.37
ERGIC1-206ENST00000519860 CEP164Q9UPV0 1460 aa42.33■■■■■ 4.37
ERGIC1-206ENST00000519860 FANCD2Q9BXW9 1451 aa42.32■■■■■ 4.37
ERGIC1-206ENST00000519860 WDR62O43379 1518 aa42.28■■■■■ 4.36
ERGIC1-206ENST00000519860 CCDC88BA6NC98 1476 aa42.11■■■■■ 4.33
ERGIC1-206ENST00000519860 URB2Q14146 1524 aaKnown RBP41.96■■■■■ 4.31
ERGIC1-206ENST00000519860 PRDM2Q13029 1718 aa41.92■■■■■ 4.3
ERGIC1-206ENST00000519860 TOPBP1Q92547 1522 aa41.55■■■■■ 4.24
ERGIC1-206ENST00000519860 IFT140Q96RY7 1462 aa41.44■■■■■ 4.22
ERGIC1-206ENST00000519860 ZNF608Q9ULD9 1512 aaPredicted RBP41.41■■■■■ 4.22
ERGIC1-206ENST00000519860 ABCC8Q09428 1581 aa41.41■■■■■ 4.22
ERGIC1-206ENST00000519860 DNMBPQ6XZF7 1577 aa41.41■■■■■ 4.22
ERGIC1-206ENST00000519860 OSCARQ8IYS5 282 aa41.31■■■■■ 4.2
ERGIC1-206ENST00000519860 SUPT5HO00267 1087 aaKnown RBP41.3■■■■■ 4.2
ERGIC1-206ENST00000519860 TRIM41Q8WV44 630 aa41.19■■■■■ 4.18
ERGIC1-206ENST00000519860 EIF4G3O43432 1585 aaKnown RBP41.17■■■■■ 4.18
ERGIC1-206ENST00000519860 POLA1P09884 1462 aaPredicted RBP41.15■■■■■ 4.18
ERGIC1-206ENST00000519860 TARBP1Q13395 1621 aaKnown RBP41.14■■■■■ 4.18
ERGIC1-206ENST00000519860 AQRO60306 1485 aaKnown RBP eCLIP41.08■■■■■ 4.178e-7■□□□□ 9.1
ERGIC1-206ENST00000519860 RAD54L2Q9Y4B4 1467 aa41.03■■■■■ 4.16
ERGIC1-206ENST00000519860 SOGA1O94964 1423 aa40.97■■■■■ 4.15
ERGIC1-206ENST00000519860 CUX1P39880 1505 aa40.97■■■■■ 4.15
ERGIC1-206ENST00000519860 FGD5Q6ZNL6 1462 aa40.96■■■■■ 4.15
ERGIC1-206ENST00000519860 TDRD9Q8NDG6 1382 aaKnown RBP40.89■■■■■ 4.14
ERGIC1-206ENST00000519860 CHD1O14646 1710 aa40.8■■■■■ 4.12
ERGIC1-206ENST00000519860 FBLN2P98095 1184 aa40.79■■■■■ 4.12
ERGIC1-206ENST00000519860 RIMBP3CA6NJZ7 1639 aa40.75■■■■■ 4.11
ERGIC1-206ENST00000519860 RIMBP3BA6NNM3 1639 aa40.75■■■■■ 4.11
ERGIC1-206ENST00000519860 RIMBP3Q9UFD9 1639 aa40.75■■■■■ 4.11
ERGIC1-206ENST00000519860 SNAPC4Q5SXM2 1469 aa40.66■■■■■ 4.1
ERGIC1-206ENST00000519860 WDR97A6NE52 1622 aa40.66■■■■■ 4.1
ERGIC1-206ENST00000519860 ARHGEF11O15085 1522 aa40.66■■■■■ 4.1
ERGIC1-206ENST00000519860 GRIN2BQ13224 1484 aa40.56■■■■■ 4.08
ERGIC1-206ENST00000519860 MAGI1Q96QZ7 1491 aaPredicted RBP40.51■■■■■ 4.07
ERGIC1-206ENST00000519860 CHMP7Q8WUX9 453 aaPredicted RBP40.49■■■■■ 4.07
ERGIC1-206ENST00000519860 GAPVD1Q14C86 1478 aa40.47■■■■■ 4.07
ERGIC1-206ENST00000519860 ABCA10Q8WWZ4 1543 aa40.47■■■■■ 4.07
ERGIC1-206ENST00000519860 PBRM1Q86U86 1689 aa40.43■■■■■ 4.06
ERGIC1-206ENST00000519860 WRNQ14191 1432 aaPredicted RBP eCLIP40.42■■■■■ 4.06
ERGIC1-206ENST00000519860 SYNJ2O15056 1496 aa40.39■■■■■ 4.06
ERGIC1-206ENST00000519860 ABCA5Q8WWZ7 1642 aa40.38■■■■■ 4.06
ERGIC1-206ENST00000519860 CYB5RLQ6IPT4 315 aa40.38■■■■■ 4.05
ERGIC1-206ENST00000519860 SYNJ1O43426 1573 aa40.38■■■■■ 4.05
ERGIC1-206ENST00000519860 TOP2BQ02880 1626 aa40.37■■■■■ 4.05
ERGIC1-206ENST00000519860 BIVM-ERCC5R4GMW8 1640 aa40.36■■■■■ 4.05
ERGIC1-206ENST00000519860 CLASP1Q7Z460 1538 aa40.32■■■■■ 4.04
ERGIC1-206ENST00000519860 ARAP1Q96P48 1450 aa40.29■■■■■ 4.04
ERGIC1-206ENST00000519860 ADAMTS12P58397 1594 aa40.06■■■■■ 4
ERGIC1-206ENST00000519860 GRIN2AQ12879 1464 aa40.06■■■■■ 4
ERGIC1-206ENST00000519860 FHAD1B1AJZ9 1412 aa39.96■■■■□ 3.99
ERGIC1-206ENST00000519860 ERICH3Q5RHP9 1530 aa39.96■■■■□ 3.99
ERGIC1-206ENST00000519860 CEP170Q5SW79 1584 aa39.91■■■■□ 3.98
ERGIC1-206ENST00000519860 NUP160Q12769 1436 aa39.88■■■■□ 3.97
ERGIC1-206ENST00000519860 TRHP20396 242 aaPredicted RBP39.86■■■■□ 3.97
ERGIC1-206ENST00000519860 ERCC6L2Q5T890 1561 aa39.78■■■■□ 3.96
ERGIC1-206ENST00000519860 SHROOM2Q13796 1616 aa39.65■■■■□ 3.94
ERGIC1-206ENST00000519860 KIF27Q86VH2 1401 aa39.6■■■■□ 3.93
ERGIC1-206ENST00000519860 IGF1RP08069 1367 aa39.56■■■■□ 3.92
ERGIC1-206ENST00000519860 PRG4Q92954 1404 aaPredicted RBP39.52■■■■□ 3.92
ERGIC1-206ENST00000519860 RUSC2Q8N2Y8 1516 aa39.5■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms