RNA–Protein interactions for RNA: ENST00000345523.9

C19orf48-201, Transcript of chromosome 19 open reading frame 48, humanhuman

APPRIS P1 TSL 2 BASIC

Gene C19orf48, Length 1,503 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C19orf48-201ENST00000345523 NISCHQ9Y2I1 1504 aa33.82■■■■□ 3.01
C19orf48-201ENST00000345523 CCDC180Q9P1Z9 1646 aa29.32■■■□□ 2.28
C19orf48-201ENST00000345523 ZCCHC6Q5VYS8 1495 aaKnown RBP28.59■■■□□ 2.17
C19orf48-201ENST00000345523 DCAF1Q9Y4B6 1507 aa28.11■■■□□ 2.09
C19orf48-201ENST00000345523 SHROOM4Q9ULL8 1493 aa28■■■□□ 2.07
C19orf48-201ENST00000345523 ABCC9O60706 1549 aa27.78■■■□□ 2.04
C19orf48-201ENST00000345523 DCAF8L2P0C7V8 631 aa27.57■■■□□ 2
C19orf48-201ENST00000345523 MYO15BQ96JP2 1530 aa27.5■■□□□ 1.99
C19orf48-201ENST00000345523 SUPT5HO00267 1087 aaKnown RBP27.49■■□□□ 1.99
C19orf48-201ENST00000345523 NACADO15069 1562 aa27.31■■□□□ 1.96
C19orf48-201ENST00000345523 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
C19orf48-201ENST00000345523 CHIC1Q5VXU3 224 aa26.85■■□□□ 1.89
C19orf48-201ENST00000345523 SCRIBQ14160 1630 aa26.78■■□□□ 1.88
C19orf48-201ENST00000345523 UNC13AQ9UPW8 1703 aa26.6■■□□□ 1.85
C19orf48-201ENST00000345523 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
C19orf48-201ENST00000345523 BICRAQ9NZM4 1560 aa26.25■■□□□ 1.79
C19orf48-201ENST00000345523 BAZ1AQ9NRL2 1556 aaPredicted RBP26.1■■□□□ 1.77
C19orf48-201ENST00000345523 CECR2Q9BXF3 1484 aa26.08■■□□□ 1.77
C19orf48-201ENST00000345523 MROH2BQ7Z745 1585 aa26.06■■□□□ 1.76
C19orf48-201ENST00000345523 PABPN1Q86U42 306 aaKnown RBP eCLIP26.04■■□□□ 1.76not detected■□□□□ 8.1
C19orf48-201ENST00000345523 TRIM41Q8WV44 630 aa25.92■■□□□ 1.74
C19orf48-201ENST00000345523 WIZO95785 1651 aa25.83■■□□□ 1.72
C19orf48-201ENST00000345523 TOP2AP11388 1531 aaKnown RBP25.76■■□□□ 1.71
C19orf48-201ENST00000345523 SMARCA4P51532 1647 aa25.75■■□□□ 1.71
C19orf48-201ENST00000345523 LOC105371045A0A1W2PR82 267 aa25.72■■□□□ 1.71
C19orf48-201ENST00000345523 HRCP23327 699 aa25.65■■□□□ 1.7
C19orf48-201ENST00000345523 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
C19orf48-201ENST00000345523 PCGF6Q9BYE7 350 aa25.56■■□□□ 1.68
C19orf48-201ENST00000345523 TRIM26Q12899 539 aaPredicted RBP25.52■■□□□ 1.68
C19orf48-201ENST00000345523 PEG3Q9GZU2 1588 aa25.51■■□□□ 1.67
C19orf48-201ENST00000345523 SMARCA2P51531 1590 aa25.47■■□□□ 1.67
C19orf48-201ENST00000345523 CCDC88BA6NC98 1476 aa25.47■■□□□ 1.67
C19orf48-201ENST00000345523 EEA1Q15075 1411 aa25.31■■□□□ 1.64
C19orf48-201ENST00000345523 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
C19orf48-201ENST00000345523 FAM9AQ8IZU1 332 aaPredicted RBP25.27■■□□□ 1.64
C19orf48-201ENST00000345523 CC2D2AQ9P2K1 1620 aa25.2■■□□□ 1.63
C19orf48-201ENST00000345523 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
C19orf48-201ENST00000345523 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
C19orf48-201ENST00000345523 HMGXB3Q12766 1538 aa25.16■■□□□ 1.62
C19orf48-201ENST00000345523 ZEB1P37275 1124 aaPredicted RBP25.15■■□□□ 1.62
C19orf48-201ENST00000345523 NCAPD3P42695 1498 aa25.14■■□□□ 1.61
C19orf48-201ENST00000345523 ABCC8Q09428 1581 aa25.08■■□□□ 1.6
C19orf48-201ENST00000345523 WRNQ14191 1432 aaPredicted RBP eCLIP25.02■■□□□ 1.6
C19orf48-201ENST00000345523 TNIKQ9UKE5 1360 aa24.99■■□□□ 1.59
C19orf48-201ENST00000345523 CSRNP3Q8WYN3 585 aa24.96■■□□□ 1.59
C19orf48-201ENST00000345523 SOGA1O94964 1423 aa24.87■■□□□ 1.57
C19orf48-201ENST00000345523 GOLGA3Q08378 1498 aa24.85■■□□□ 1.57
C19orf48-201ENST00000345523 CEP162Q5TB80 1403 aa24.81■■□□□ 1.56
C19orf48-201ENST00000345523 CEP164Q9UPV0 1460 aa24.79■■□□□ 1.56
C19orf48-201ENST00000345523 EHMT2Q96KQ7 1210 aa24.75■■□□□ 1.55
C19orf48-201ENST00000345523 KIF21BO75037 1637 aa24.74■■□□□ 1.55
C19orf48-201ENST00000345523 SYNJ1O43426 1573 aa24.72■■□□□ 1.55
C19orf48-201ENST00000345523 TOP2BQ02880 1626 aa24.67■■□□□ 1.54
C19orf48-201ENST00000345523 UBTFP17480 764 aaKnown RBP24.66■■□□□ 1.54
C19orf48-201ENST00000345523 RUSC2Q8N2Y8 1516 aa24.64■■□□□ 1.53
C19orf48-201ENST00000345523 PPARGC1BQ86YN6 1023 aaKnown RBP24.62■■□□□ 1.53
C19orf48-201ENST00000345523 BIVM-ERCC5R4GMW8 1640 aa24.61■■□□□ 1.53
C19orf48-201ENST00000345523 CFTRP13569 1480 aa24.54■■□□□ 1.52
C19orf48-201ENST00000345523 PRDM2Q13029 1718 aa24.54■■□□□ 1.52
C19orf48-201ENST00000345523 ERICH3Q5RHP9 1530 aa24.48■■□□□ 1.51
C19orf48-201ENST00000345523 CLIP1P30622 1438 aa24.45■■□□□ 1.51
C19orf48-201ENST00000345523 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
C19orf48-201ENST00000345523 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
C19orf48-201ENST00000345523 VPS8Q8N3P4 1428 aa24.39■■□□□ 1.5
C19orf48-201ENST00000345523 KIF27Q86VH2 1401 aa24.37■■□□□ 1.49
C19orf48-201ENST00000345523 PRXQ9BXM0 1461 aa24.37■■□□□ 1.49
C19orf48-201ENST00000345523 RAPGEF2Q9Y4G8 1499 aa24.35■■□□□ 1.49
C19orf48-201ENST00000345523 CUX1P39880 1505 aa24.33■■□□□ 1.48
C19orf48-201ENST00000345523 APLP2Q06481 763 aa24.31■■□□□ 1.48
C19orf48-201ENST00000345523 CCER1Q8TC90 406 aaPredicted RBP24.3■■□□□ 1.48
C19orf48-201ENST00000345523 NESP48681 1621 aa24.28■■□□□ 1.48
C19orf48-201ENST00000345523 FANCD2Q9BXW9 1451 aa24.2■■□□□ 1.46
C19orf48-201ENST00000345523 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
C19orf48-201ENST00000345523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.15■■□□□ 1.46
C19orf48-201ENST00000345523 KIF21AQ7Z4S6 1674 aa24.11■■□□□ 1.45
C19orf48-201ENST00000345523 ARAP1Q96P48 1450 aa24.01■■□□□ 1.43
C19orf48-201ENST00000345523 IGF1RP08069 1367 aa24■■□□□ 1.43
C19orf48-201ENST00000345523 CUX2O14529 1486 aa24■■□□□ 1.43
C19orf48-201ENST00000345523 DNMBPQ6XZF7 1577 aa23.99■■□□□ 1.43
C19orf48-201ENST00000345523 TTBK1Q5TCY1 1321 aaPredicted RBP23.97■■□□□ 1.43
C19orf48-201ENST00000345523 FGD5Q6ZNL6 1462 aa23.96■■□□□ 1.43
C19orf48-201ENST00000345523 CLSPNQ9HAW4 1339 aa23.93■■□□□ 1.42
C19orf48-201ENST00000345523 CARMIL1Q5VZK9 1371 aa23.92■■□□□ 1.42
C19orf48-201ENST00000345523 MAP3K1Q13233 1512 aa23.92■■□□□ 1.42
C19orf48-201ENST00000345523 TOPBP1Q92547 1522 aa23.91■■□□□ 1.42
C19orf48-201ENST00000345523 ERCC6Q03468 1493 aa23.91■■□□□ 1.42
C19orf48-201ENST00000345523 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.41
C19orf48-201ENST00000345523 URB2Q14146 1524 aaKnown RBP23.89■■□□□ 1.41
C19orf48-201ENST00000345523 ARHGAP35Q9NRY4 1499 aa23.87■■□□□ 1.41
C19orf48-201ENST00000345523 ABCA10Q8WWZ4 1543 aa23.86■■□□□ 1.41
C19orf48-201ENST00000345523 RRBP1Q9P2E9 1410 aaKnown RBP23.83■■□□□ 1.4
C19orf48-201ENST00000345523 FHAD1B1AJZ9 1412 aa23.8■■□□□ 1.4
C19orf48-201ENST00000345523 HNRNPUL2Q1KMD3 747 aaKnown RBP23.79■■□□□ 1.4
C19orf48-201ENST00000345523 WDR62O43379 1518 aa23.79■■□□□ 1.4
C19orf48-201ENST00000345523 RANGAP1P46060 587 aaPredicted RBP23.79■■□□□ 1.4
C19orf48-201ENST00000345523 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
C19orf48-201ENST00000345523 POLA1P09884 1462 aaPredicted RBP23.76■■□□□ 1.39
C19orf48-201ENST00000345523 CUL7Q14999 1698 aa23.74■■□□□ 1.39
C19orf48-201ENST00000345523 ZNF316A6NFI3 1004 aaPredicted RBP23.71■■□□□ 1.39
C19orf48-201ENST00000345523 EFCAB5A4FU69 1503 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms