RNA–Protein interactions for RNA: ENST00000448497.1

RFC4-209, Transcript of replication factor C subunit 4, humanhuman

TSL 5

Gene RFC4, Length 453 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-209ENST00000448497 AEBP2Q6ZN18 517 aaPredicted RBP18.83■□□□□ 0.6
RFC4-209ENST00000448497 CHIC1Q5VXU3 224 aa18.56■□□□□ 0.56
RFC4-209ENST00000448497 PHF23Q9BUL5 403 aaPredicted RBP16.25■□□□□ 0.19
RFC4-209ENST00000448497 SENP3Q9H4L4 574 aaPredicted RBP16.09■□□□□ 0.17
RFC4-209ENST00000448497 NISCHQ9Y2I1 1504 aa15.62■□□□□ 0.09
RFC4-209ENST00000448497 PLPPR3Q6T4P5 718 aa15.15■□□□□ 0.02
RFC4-209ENST00000448497 FOXD1Q16676 465 aa14.83□□□□□ -0.04
RFC4-209ENST00000448497 ADRA2BP18089 450 aa14.29□□□□□ -0.12
RFC4-209ENST00000448497 PPP6R1Q9UPN7 881 aa14.29□□□□□ -0.12
RFC4-209ENST00000448497 PIAS4Q8N2W9 510 aaPredicted RBP14.04□□□□□ -0.16
RFC4-209ENST00000448497 MSH5O43196 834 aa13.76□□□□□ -0.21
RFC4-209ENST00000448497 CCDC180Q9P1Z9 1646 aa13.69□□□□□ -0.22
RFC4-209ENST00000448497 PPP4R3CPQ6ZMV5 832 aa13.3□□□□□ -0.28
RFC4-209ENST00000448497 SCAF1Q9H7N4 1312 aaKnown RBP13.24□□□□□ -0.29
RFC4-209ENST00000448497 ZCCHC6Q5VYS8 1495 aaKnown RBP13.15□□□□□ -0.3
RFC4-209ENST00000448497 NCBP3Q53F19 620 aaKnown RBP13.07□□□□□ -0.32
RFC4-209ENST00000448497 KCNA4P22459 653 aa13.06□□□□□ -0.32
RFC4-209ENST00000448497 DCAF1Q9Y4B6 1507 aa13.02□□□□□ -0.33
RFC4-209ENST00000448497 CNKSR2Q8WXI2 1034 aa12.96□□□□□ -0.33
RFC4-209ENST00000448497 MAPK8IP2Q13387 824 aaPredicted RBP12.91□□□□□ -0.34
RFC4-209ENST00000448497 MYO15BQ96JP2 1530 aa12.86□□□□□ -0.35
RFC4-209ENST00000448497 DMRT2Q9Y5R5 561 aa12.83□□□□□ -0.36
RFC4-209ENST00000448497 NPM3O75607 178 aaKnown RBP12.78□□□□□ -0.36
RFC4-209ENST00000448497 RNF216Q9NWF9 866 aaPredicted RBP12.7□□□□□ -0.38
RFC4-209ENST00000448497 NACADO15069 1562 aa12.69□□□□□ -0.38
RFC4-209ENST00000448497 ABCC9O60706 1549 aa12.65□□□□□ -0.38
RFC4-209ENST00000448497 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
RFC4-209ENST00000448497 HOXD11P31277 338 aaPredicted RBP12.61□□□□□ -0.39
RFC4-209ENST00000448497 SHROOM4Q9ULL8 1493 aa12.57□□□□□ -0.4
RFC4-209ENST00000448497 RB1CC1Q8TDY2 1594 aa12.52□□□□□ -0.4
RFC4-209ENST00000448497 DNAJC5BQ9UF47 199 aa12.52□□□□□ -0.41
RFC4-209ENST00000448497 SLC4A1APQ9BWU0 796 aaKnown RBP12.49□□□□□ -0.41
RFC4-209ENST00000448497 SCRIBQ14160 1630 aa12.43□□□□□ -0.42
RFC4-209ENST00000448497 UNC13AQ9UPW8 1703 aa12.31□□□□□ -0.44
RFC4-209ENST00000448497 POTEDQ86YR6 584 aa12.28□□□□□ -0.44
RFC4-209ENST00000448497 DCAF8L1A6NGE4 600 aa12.22□□□□□ -0.45
RFC4-209ENST00000448497 EHMT2Q96KQ7 1210 aa12.17□□□□□ -0.46
RFC4-209ENST00000448497 BICRAQ9NZM4 1560 aa12.14□□□□□ -0.47
RFC4-209ENST00000448497 SUPT5HO00267 1087 aaKnown RBP12.14□□□□□ -0.47
RFC4-209ENST00000448497 RSF1Q96T23 1441 aaPredicted RBP12.11□□□□□ -0.47
RFC4-209ENST00000448497 BAZ1AQ9NRL2 1556 aaPredicted RBP12.07□□□□□ -0.48
RFC4-209ENST00000448497 FOXD4L1Q9NU39 408 aa12.06□□□□□ -0.48
RFC4-209ENST00000448497 CECR2Q9BXF3 1484 aa12.05□□□□□ -0.48
RFC4-209ENST00000448497 MROH2BQ7Z745 1585 aa12.02□□□□□ -0.49
RFC4-209ENST00000448497 SLC4A2P04920 1241 aa12.02□□□□□ -0.49
RFC4-209ENST00000448497 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
RFC4-209ENST00000448497 SMARCA4P51532 1647 aa12□□□□□ -0.49
RFC4-209ENST00000448497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12□□□□□ -0.498e-14■■■□□ 16.6
RFC4-209ENST00000448497 ZBTB22O15209 634 aa11.98□□□□□ -0.49
RFC4-209ENST00000448497 WIZO95785 1651 aa11.94□□□□□ -0.5
RFC4-209ENST00000448497 PEG3Q9GZU2 1588 aa11.92□□□□□ -0.5
RFC4-209ENST00000448497 PABPN1Q86U42 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
RFC4-209ENST00000448497 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
RFC4-209ENST00000448497 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
RFC4-209ENST00000448497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.8□□□□□ -0.52
RFC4-209ENST00000448497 HNRNPUL2Q1KMD3 747 aaKnown RBP11.8□□□□□ -0.52
RFC4-209ENST00000448497 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
RFC4-209ENST00000448497 U3KPZ7 1027 aaPredicted RBP11.78□□□□□ -0.52
RFC4-209ENST00000448497 ATAD2BQ9ULI0 1458 aa11.75□□□□□ -0.53
RFC4-209ENST00000448497 EIF4G1Q04637 1599 aaKnown RBP11.75□□□□□ -0.53
RFC4-209ENST00000448497 RNF39Q9H2S5 420 aa11.74□□□□□ -0.53
RFC4-209ENST00000448497 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
RFC4-209ENST00000448497 HMGXB3Q12766 1538 aa11.7□□□□□ -0.54
RFC4-209ENST00000448497 ATXN8OSP0DMR3 200 aa11.69□□□□□ -0.54
RFC4-209ENST00000448497 CCDC88BA6NC98 1476 aa11.69□□□□□ -0.54
RFC4-209ENST00000448497 APLP2Q06481 763 aa11.68□□□□□ -0.54
RFC4-209ENST00000448497 NCAPD3P42695 1498 aa11.68□□□□□ -0.54
RFC4-209ENST00000448497 BAZ1BQ9UIG0 1483 aaKnown RBP11.67□□□□□ -0.54
RFC4-209ENST00000448497 C1QBPQ07021 282 aaKnown RBP11.66□□□□□ -0.54
RFC4-209ENST00000448497 CC2D2AQ9P2K1 1620 aa11.54□□□□□ -0.56
RFC4-209ENST00000448497 TRIM41Q8WV44 630 aa11.48□□□□□ -0.57
RFC4-209ENST00000448497 PRDM2Q13029 1718 aa11.48□□□□□ -0.57
RFC4-209ENST00000448497 ZNF219Q9P2Y4 722 aaPredicted RBP11.44□□□□□ -0.58
RFC4-209ENST00000448497 CFTRP13569 1480 aa11.43□□□□□ -0.58
RFC4-209ENST00000448497 ABCC8Q09428 1581 aa11.42□□□□□ -0.58
RFC4-209ENST00000448497 ATF5Q9Y2D1 282 aaPredicted RBP11.42□□□□□ -0.58
RFC4-209ENST00000448497 CAPN15O75808 1086 aa11.39□□□□□ -0.59
RFC4-209ENST00000448497 SPINK5Q9NQ38 1064 aaPredicted RBP11.39□□□□□ -0.59
RFC4-209ENST00000448497 WRNQ14191 1432 aaPredicted RBP eCLIP11.38□□□□□ -0.59
RFC4-209ENST00000448497 BIVM-ERCC5R4GMW8 1640 aa11.36□□□□□ -0.59
RFC4-209ENST00000448497 CACNB1Q02641 598 aaPredicted RBP11.36□□□□□ -0.59
RFC4-209ENST00000448497 TOP2BQ02880 1626 aa11.35□□□□□ -0.59
RFC4-209ENST00000448497 SYNJ1O43426 1573 aa11.35□□□□□ -0.59
RFC4-209ENST00000448497 EEA1Q15075 1411 aa11.35□□□□□ -0.59
RFC4-209ENST00000448497 CADPSQ9ULU8 1353 aa11.34□□□□□ -0.59
RFC4-209ENST00000448497 TRHP20396 242 aaPredicted RBP11.34□□□□□ -0.59
RFC4-209ENST00000448497 LAMC3Q9Y6N6 1575 aa11.28□□□□□ -0.6
RFC4-209ENST00000448497 CUX1P39880 1505 aa11.25□□□□□ -0.61
RFC4-209ENST00000448497 LOC105371045A0A1W2PR82 267 aa11.22□□□□□ -0.61
RFC4-209ENST00000448497 SOGA1O94964 1423 aa11.21□□□□□ -0.61
RFC4-209ENST00000448497 FANCD2Q9BXW9 1451 aa11.19□□□□□ -0.62
RFC4-209ENST00000448497 POLA2Q14181 598 aa11.19□□□□□ -0.62
RFC4-209ENST00000448497 KIF21BO75037 1637 aa11.19□□□□□ -0.62
RFC4-209ENST00000448497 DSG3P32926 999 aa11.18□□□□□ -0.62
RFC4-209ENST00000448497 DNMBPQ6XZF7 1577 aa11.17□□□□□ -0.62
RFC4-209ENST00000448497 RUSC2Q8N2Y8 1516 aa11.16□□□□□ -0.62
RFC4-209ENST00000448497 FAM9AQ8IZU1 332 aaPredicted RBP11.16□□□□□ -0.62
RFC4-209ENST00000448497 NESP48681 1621 aa11.14□□□□□ -0.63
RFC4-209ENST00000448497 PDS5BQ9NTI5 1447 aa11.14□□□□□ -0.63
RFC4-209ENST00000448497 ABCB7O75027 752 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms