RNA–Protein interactions for RNA: ENST00000395548.6

AP3S1-202, Transcript of adaptor related protein complex 3 subunit sigma 1, humanhuman

TSL 1 (best)

Gene AP3S1, Length 1,180 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S1-202ENST00000395548 AEBP2Q6ZN18 517 aaPredicted RBP26.27■■□□□ 1.8
AP3S1-202ENST00000395548 CHIC1Q5VXU3 224 aa25.38■■□□□ 1.65
AP3S1-202ENST00000395548 SENP3Q9H4L4 574 aaPredicted RBP22.45■■□□□ 1.18
AP3S1-202ENST00000395548 PHF23Q9BUL5 403 aaPredicted RBP22.23■■□□□ 1.15
AP3S1-202ENST00000395548 FOXD1Q16676 465 aa20.81■□□□□ 0.92
AP3S1-202ENST00000395548 PLPPR3Q6T4P5 718 aa20.49■□□□□ 0.87
AP3S1-202ENST00000395548 PPP6R1Q9UPN7 881 aa19.73■□□□□ 0.75
AP3S1-202ENST00000395548 ADRA2BP18089 450 aa19.7■□□□□ 0.74
AP3S1-202ENST00000395548 PIAS4Q8N2W9 510 aaPredicted RBP19.57■□□□□ 0.72
AP3S1-202ENST00000395548 MSH5O43196 834 aa19.41■□□□□ 0.7
AP3S1-202ENST00000395548 POTEDQ86YR6 584 aa18.94■□□□□ 0.62
AP3S1-202ENST00000395548 SCAF1Q9H7N4 1312 aaKnown RBP18.15■□□□□ 0.5
AP3S1-202ENST00000395548 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
AP3S1-202ENST00000395548 MAPK8IP2Q13387 824 aaPredicted RBP17.97■□□□□ 0.47
AP3S1-202ENST00000395548 DMRT2Q9Y5R5 561 aa17.84■□□□□ 0.45
AP3S1-202ENST00000395548 CNKSR2Q8WXI2 1034 aa17.59■□□□□ 0.41
AP3S1-202ENST00000395548 NCBP3Q53F19 620 aaKnown RBP17.48■□□□□ 0.39
AP3S1-202ENST00000395548 HOXD11P31277 338 aaPredicted RBP17.33■□□□□ 0.36
AP3S1-202ENST00000395548 RNF216Q9NWF9 866 aaPredicted RBP17.32■□□□□ 0.36
AP3S1-202ENST00000395548 NPM3O75607 178 aaKnown RBP17.13■□□□□ 0.33
AP3S1-202ENST00000395548 KCNA4P22459 653 aa17.12■□□□□ 0.33
AP3S1-202ENST00000395548 DCAF8L1A6NGE4 600 aa17.1■□□□□ 0.33
AP3S1-202ENST00000395548 DNAJC5BQ9UF47 199 aa16.73■□□□□ 0.27
AP3S1-202ENST00000395548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.24
AP3S1-202ENST00000395548 RNF39Q9H2S5 420 aa16.55■□□□□ 0.24
AP3S1-202ENST00000395548 CACNB1Q02641 598 aaPredicted RBP16.41■□□□□ 0.22
AP3S1-202ENST00000395548 C1QBPQ07021 282 aaKnown RBP16.38■□□□□ 0.21
AP3S1-202ENST00000395548 SLC4A1APQ9BWU0 796 aaKnown RBP16.29■□□□□ 0.2
AP3S1-202ENST00000395548 SLC4A2P04920 1241 aa16.24■□□□□ 0.19
AP3S1-202ENST00000395548 U3KPZ7 1027 aaPredicted RBP16.18■□□□□ 0.18
AP3S1-202ENST00000395548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.97■□□□□ 0.15
AP3S1-202ENST00000395548 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
AP3S1-202ENST00000395548 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
AP3S1-202ENST00000395548 APLP2Q06481 763 aa15.9■□□□□ 0.14
AP3S1-202ENST00000395548 MYCNP04198 464 aaPredicted RBP15.88■□□□□ 0.13
AP3S1-202ENST00000395548 SAMD1Q6SPF0 538 aaPredicted RBP15.87■□□□□ 0.13
AP3S1-202ENST00000395548 CAPN15O75808 1086 aa15.83■□□□□ 0.12
AP3S1-202ENST00000395548 SPINK5Q9NQ38 1064 aaPredicted RBP15.82■□□□□ 0.12
AP3S1-202ENST00000395548 ZBTB22O15209 634 aa15.71■□□□□ 0.11
AP3S1-202ENST00000395548 ZNF219Q9P2Y4 722 aaPredicted RBP15.68■□□□□ 0.1
AP3S1-202ENST00000395548 TRHP20396 242 aaPredicted RBP15.66■□□□□ 0.1
AP3S1-202ENST00000395548 DSG3P32926 999 aa15.62■□□□□ 0.09
AP3S1-202ENST00000395548 ABCB7O75027 752 aa15.46■□□□□ 0.07
AP3S1-202ENST00000395548 ATXN8OSP0DMR3 200 aa15.43■□□□□ 0.06
AP3S1-202ENST00000395548 ATF5Q9Y2D1 282 aaPredicted RBP15.4■□□□□ 0.06
AP3S1-202ENST00000395548 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
AP3S1-202ENST00000395548 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
AP3S1-202ENST00000395548 POLA2Q14181 598 aa15.33■□□□□ 0.04
AP3S1-202ENST00000395548 ZBTB12Q9Y330 459 aaPredicted RBP15.12■□□□□ 0.01
AP3S1-202ENST00000395548 RBM42Q9BTD8 480 aaKnown RBP14.97□□□□□ -0.01
AP3S1-202ENST00000395548 FBLN2P98095 1184 aa14.9□□□□□ -0.02
AP3S1-202ENST00000395548 OSCARQ8IYS5 282 aa14.79□□□□□ -0.04
AP3S1-202ENST00000395548 MKRN4PQ13434 485 aaPredicted RBP14.72□□□□□ -0.05
AP3S1-202ENST00000395548 AKT1S1Q96B36 256 aa14.69□□□□□ -0.06
AP3S1-202ENST00000395548 SPDYE2BA6NHP3 402 aa14.65□□□□□ -0.06
AP3S1-202ENST00000395548 SPDYE6P0CI01 402 aa14.65□□□□□ -0.06
AP3S1-202ENST00000395548 SPDYE2Q495Y8 402 aa14.65□□□□□ -0.06
AP3S1-202ENST00000395548 POTEHQ6S545 545 aa14.64□□□□□ -0.07
AP3S1-202ENST00000395548 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
AP3S1-202ENST00000395548 REM2Q8IYK8 340 aaPredicted RBP14.51□□□□□ -0.09
AP3S1-202ENST00000395548 SSUH2Q9Y2M2 353 aa14.45□□□□□ -0.1
AP3S1-202ENST00000395548 CHRDL2Q6WN34 429 aa14.44□□□□□ -0.1
AP3S1-202ENST00000395548 PITPNM1O00562 1244 aa14.33□□□□□ -0.12
AP3S1-202ENST00000395548 SPDYE1Q8NFV5 336 aaPredicted RBP14.31□□□□□ -0.12
AP3S1-202ENST00000395548 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
AP3S1-202ENST00000395548 SPDYE4A6NLX3 237 aa14.29□□□□□ -0.12
AP3S1-202ENST00000395548 CLEC11AQ9Y240 323 aa14.24□□□□□ -0.13
AP3S1-202ENST00000395548 PIP4P2Q8N4L2 257 aa14.16□□□□□ -0.14
AP3S1-202ENST00000395548 FXR2P51116 673 aaKnown RBP eCLIP14.15□□□□□ -0.14
AP3S1-202ENST00000395548 PRR29P0C7W0 189 aa14.08□□□□□ -0.16
AP3S1-202ENST00000395548 STAG3Q9UJ98 1225 aa14.06□□□□□ -0.16
AP3S1-202ENST00000395548 PRKAR2AP13861 404 aaKnown RBP13.99□□□□□ -0.17
AP3S1-202ENST00000395548 PROM2Q8N271 834 aa13.96□□□□□ -0.17
AP3S1-202ENST00000395548 FKBP8Q14318 412 aa13.94□□□□□ -0.18
AP3S1-202ENST00000395548 CHADLQ6NUI6 762 aa13.87□□□□□ -0.19
AP3S1-202ENST00000395548 HAX1O00165 279 aa13.84□□□□□ -0.19
AP3S1-202ENST00000395548 NISCHQ9Y2I1 1504 aa13.77□□□□□ -0.21
AP3S1-202ENST00000395548 CREBZFQ9NS37 354 aa13.76□□□□□ -0.21
AP3S1-202ENST00000395548 FARP1Q9Y4F1 1045 aaPredicted RBP13.75□□□□□ -0.21
AP3S1-202ENST00000395548 C19orf67A6NJJ6 358 aa13.68□□□□□ -0.22
AP3S1-202ENST00000395548 ABCC9O60706 1549 aa13.68□□□□□ -0.22
AP3S1-202ENST00000395548 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
AP3S1-202ENST00000395548 PLEKHG5O94827 1062 aa13.64□□□□□ -0.23
AP3S1-202ENST00000395548 FBXO3Q9UK99 471 aa13.62□□□□□ -0.23
AP3S1-202ENST00000395548 NPM1P06748 294 aaKnown RBP eCLIP13.61□□□□□ -0.23
AP3S1-202ENST00000395548 MIER1Q8N108 512 aa13.61□□□□□ -0.23
AP3S1-202ENST00000395548 EVX2Q03828 476 aa13.6□□□□□ -0.23
AP3S1-202ENST00000395548 CD44P16070 742 aaKnown RBP13.57□□□□□ -0.24
AP3S1-202ENST00000395548 PLCD3Q8N3E9 789 aa13.56□□□□□ -0.24
AP3S1-202ENST00000395548 MNX1P50219 401 aaPredicted RBP13.55□□□□□ -0.24
AP3S1-202ENST00000395548 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
AP3S1-202ENST00000395548 ZBTB47Q9UFB7 747 aaPredicted RBP13.47□□□□□ -0.25
AP3S1-202ENST00000395548 ZRANB1Q9UGI0 708 aa13.45□□□□□ -0.26
AP3S1-202ENST00000395548 CLCN6P51797 869 aa13.42□□□□□ -0.26
AP3S1-202ENST00000395548 GABBR2O75899 941 aa13.38□□□□□ -0.27
AP3S1-202ENST00000395548 VASPP50552 380 aaPredicted RBP13.38□□□□□ -0.27
AP3S1-202ENST00000395548 ZNF579Q8NAF0 562 aaKnown RBP13.38□□□□□ -0.27
AP3S1-202ENST00000395548 DNAJC5Q9H3Z4 198 aa13.35□□□□□ -0.27
AP3S1-202ENST00000395548 TSPYL2Q9H2G4 693 aaPredicted RBP13.32□□□□□ -0.28
AP3S1-202ENST00000395548 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 242.9 ms