Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.081e-6■■□□□ 12.2
RPS3P23396 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.041e-6■■□□□ 12.2
RPS3P23396 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.029e-9■■□□□ 12.2
RPS3P23396 MIIP-202ENST00000460823 955 ntTSL 515.15■□□□□ 0.021e-6■■□□□ 12.2
RPS3P23396 FOXRED1-202ENST00000524751 895 ntTSL 314.97□□□□□ -0.011e-6■■□□□ 12.2
RPS3P23396 FOXRED1-212ENST00000532101 1030 ntTSL 514.58□□□□□ -0.081e-6■■□□□ 12.2
RPS3P23396 FOXRED1-204ENST00000525770 1427 ntTSL 214.12□□□□□ -0.151e-6■■□□□ 12.2
RPS3P23396 CLK3-204ENST00000483723 1749 ntTSL 213.97□□□□□ -0.171e-6■■□□□ 12.2
RPS3P23396 FOXRED1-217ENST00000534011 1955 ntTSL 213.58□□□□□ -0.241e-6■■□□□ 12.2
RPS3P23396 MIIP-206ENST00000492256 806 ntTSL 213.49□□□□□ -0.251e-6■■□□□ 12.2
RPS3P23396 FOXRED1-218ENST00000534315 2210 ntTSL 1 (best)13.48□□□□□ -0.251e-6■■□□□ 12.2
RPS3P23396 CLK3-203ENST00000454830 3787 ntTSL 513.43□□□□□ -0.261e-6■■□□□ 12.2
RPS3P23396 CLK3-213ENST00000563842 860 ntTSL 513.04□□□□□ -0.321e-6■■□□□ 12.2
RPS3P23396 CLK3-216ENST00000564468 929 ntTSL 313.04□□□□□ -0.321e-6■■□□□ 12.2
RPS3P23396 CLK3-218ENST00000566926 646 ntTSL 513.04□□□□□ -0.321e-6■■□□□ 12.2
RPS3P23396 SEC61B-202ENST00000481573 687 ntTSL 213.02□□□□□ -0.331e-6■■□□□ 12.2
RPS3P23396 CLK3-206ENST00000562078 2455 ntTSL 212.87□□□□□ -0.351e-6■■□□□ 12.2
RPS3P23396 IRF2BP2-203ENST00000491430 683 ntTSL 1 (best)12.78□□□□□ -0.361e-8■■□□□ 12.2
RPS3P23396 CLK3-201ENST00000345005 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.381e-6■■□□□ 12.2
RPS3P23396 CLK3-226ENST00000569406 3591 ntTSL 210.67□□□□□ -0.71e-6■■□□□ 12.2
RPS3P23396 CLK3-205ENST00000561673 639 ntTSL 39.91□□□□□ -0.821e-6■■□□□ 12.2
RPS3P23396 FOXRED1-216ENST00000533839 559 ntTSL 49.33□□□□□ -0.921e-6■■□□□ 12.2
RPS3P23396 RBMX-202ENST00000419968 940 ntTSL 58.96□□□□□ -0.981e-6■■□□□ 12.2
RPS3P23396 FOXRED1-210ENST00000530642 3045 ntTSL 28.25□□□□□ -1.091e-6■■□□□ 12.2
RPS3P23396 HUWE1-213ENST00000489876 754 ntTSL 47.83□□□□□ -1.161e-6■■□□□ 12.2
RPS3P23396 KDM1A-206ENST00000602503 2810 nt7.63□□□□□ -1.191e-7■■□□□ 12.2
RPS3P23396 AC104109.4-201ENST00000520515 1744 ntTSL 27.32□□□□□ -1.241e-6■■□□□ 12.2
RPS3P23396 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.97□□□□□ -1.291e-6■■□□□ 12.2
RPS3P23396 MIR6729-201ENST00000618194 65 ntBASIC4.99□□□□□ -1.611e-6■■□□□ 12.2
RPS3P23396 CLK3-219ENST00000567805 327 ntTSL 34.62□□□□□ -1.671e-6■■□□□ 12.2
RPS3P23396 RSRP1-213ENST00000566395 824 ntTSL 34.45□□□□□ -1.71e-16■■□□□ 12.2
RPS3P23396 COPA-203ENST00000481040 578 ntTSL 32.69□□□□□ -1.981e-6■■□□□ 12.2
RPS3P23396 RNA5SP99-201ENST00000364020 114 ntBASIC1.25□□□□□ -2.211e-6■■□□□ 12.2
RPS3P23396 PARK7-206ENST00000465354 949 ntTSL 213.62□□□□□ -0.233e-6■■□□□ 12.2
RPS3P23396 REEP6-204ENST00000591735 1026 ntTSL 221.33■■□□□ 1.016e-7■■□□□ 12.2
RPS3P23396 SUN2-211ENST00000455125 872 ntTSL 212.8□□□□□ -0.362e-7■■□□□ 12.2
RPS3P23396 SUN2-215ENST00000470642 571 ntTSL 38.83□□□□□ -12e-7■■□□□ 12.2
RPS3P23396 PPIF-204ENST00000492149 646 ntTSL 216.66■□□□□ 0.263e-7■■□□□ 12.2
RPS3P23396 AKR1A1-212ENST00000496999 775 ntTSL 216.5■□□□□ 0.232e-6■■□□□ 12.2
RPS3P23396 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.24■□□□□ 0.192e-6■■□□□ 12.2
RPS3P23396 CAT-202ENST00000525707 562 ntTSL 27.66□□□□□ -1.181e-6■■□□□ 12.1
RPS3P23396 CAT-204ENST00000530343 752 ntTSL 25.34□□□□□ -1.551e-6■■□□□ 12.1
RPS3P23396 EWSR1-211ENST00000437155 933 ntTSL 59.15□□□□□ -0.942e-9■■□□□ 12.1
RPS3P23396 EWSR1-214ENST00000455726 710 ntTSL 37.01□□□□□ -1.292e-9■■□□□ 12.1
RPS3P23396 CLU-207ENST00000520796 737 ntTSL 518.11■□□□□ 0.497e-13■■□□□ 12.1
RPS3P23396 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.42e-9■■□□□ 12.1
RPS3P23396 TFRC-210ENST00000465288 560 ntTSL 58.43□□□□□ -1.062e-7■■□□□ 12.1
RPS3P23396 TFRC-212ENST00000477148 570 ntTSL 45.16□□□□□ -1.582e-7■■□□□ 12.1
RPS3P23396 PTK7-217ENST00000490710 582 ntTSL 215.38■□□□□ 0.055e-7■■□□□ 12.1
RPS3P23396 NAGPA-212ENST00000567739 583 ntTSL 216.13■□□□□ 0.172e-6■■□□□ 12.1
RPS3P23396 NAGPA-211ENST00000566137 574 ntTSL 313.59□□□□□ -0.232e-6■■□□□ 12.1
RPS3P23396 LEMD2-202ENST00000421671 2323 ntTSL 321.11■□□□□ 0.973e-7■■□□□ 12.1
RPS3P23396 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.533e-7■■□□□ 12.1
RPS3P23396 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.43e-7■■□□□ 12.1
RPS3P23396 DAG1-216ENST00000479935 711 ntTSL 1 (best)14.38□□□□□ -0.116e-7■■□□□ 12.1
RPS3P23396 EEF2K-204ENST00000568269 2367 ntTSL 1 (best)15.76■□□□□ 0.119e-12■■□□□ 12.1
RPS3P23396 SMOC1-203ENST00000553839 551 ntTSL 511□□□□□ -0.656e-8■■□□□ 12.1
RPS3P23396 FGFR1-223ENST00000496296 1898 ntTSL 1 (best)20.84■□□□□ 0.936e-8■■□□□ 12.1
RPS3P23396 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.26■□□□□ 0.676e-8■■□□□ 12.1
RPS3P23396 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.646e-8■■□□□ 12.1
RPS3P23396 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.576e-8■■□□□ 12.1
RPS3P23396 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.66■□□□□ 0.426e-8■■□□□ 12.1
RPS3P23396 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.336e-8■■□□□ 12.1
RPS3P23396 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.1□□□□□ -0.156e-8■■□□□ 12.1
RPS3P23396 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.97□□□□□ -0.176e-8■■□□□ 12.1
RPS3P23396 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.9□□□□□ -0.186e-8■■□□□ 12.1
RPS3P23396 PTCD3-203ENST00000409783 587 ntTSL 521.91■■□□□ 1.11e-6■■□□□ 12.1
RPS3P23396 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.92■□□□□ 0.781e-6■■□□□ 12.1
RPS3P23396 PTCD3-202ENST00000409326 522 ntTSL 419.92■□□□□ 0.781e-6■■□□□ 12.1
RPS3P23396 PTCD3-206ENST00000465560 747 ntTSL 319.92■□□□□ 0.781e-6■■□□□ 12.1
RPS3P23396 PTCD3-210ENST00000473829 587 ntTSL 318.44■□□□□ 0.541e-6■■□□□ 12.1
RPS3P23396 NDUFA3-213ENST00000484103 541 ntTSL 1 (best)18.41■□□□□ 0.541e-6■■□□□ 12.1
RPS3P23396 PTCD3-204ENST00000418628 532 ntTSL 418.29■□□□□ 0.521e-6■■□□□ 12.1
RPS3P23396 PTCD3-217ENST00000488801 568 ntTSL 418.29■□□□□ 0.521e-6■■□□□ 12.1
RPS3P23396 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.271e-6■■□□□ 12.1
RPS3P23396 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.52■□□□□ 0.241e-6■■□□□ 12.1
RPS3P23396 NDUFA3-206ENST00000419113 654 ntTSL 316.22■□□□□ 0.191e-6■■□□□ 12.1
RPS3P23396 CDK8-205ENST00000536792 3032 ntTSL 1 (best)15.78■□□□□ 0.121e-6■■□□□ 12.1
RPS3P23396 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.77■□□□□ 0.121e-6■■□□□ 12.1
RPS3P23396 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.16■□□□□ 0.021e-6■■□□□ 12.1
RPS3P23396 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.86□□□□□ -0.031e-6■■□□□ 12.1
RPS3P23396 NDUFA3-205ENST00000417903 666 ntTSL 314.78□□□□□ -0.041e-6■■□□□ 12.1
RPS3P23396 DPF2-212ENST00000532492 438 ntTSL 213.5□□□□□ -0.251e-6■■□□□ 12.1
RPS3P23396 FBXO5-201ENST00000229758 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.31e-6■■□□□ 12.1
RPS3P23396 GRN-217ENST00000590984 562 ntTSL 213.02□□□□□ -0.333e-9■■□□□ 12.1
RPS3P23396 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.371e-6■■□□□ 12.1
RPS3P23396 ITGB1-202ENST00000396033 3784 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.494e-8■■□□□ 12.1
RPS3P23396 DPF2-206ENST00000530973 702 ntTSL 212.01□□□□□ -0.491e-6■■□□□ 12.1
RPS3P23396 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.51e-6■■□□□ 12.1
RPS3P23396 NDUFA3-209ENST00000451517 445 ntTSL 1 (best)11.16□□□□□ -0.621e-6■■□□□ 12.1
RPS3P23396 NDUFA3-210ENST00000471292 646 ntTSL 2 BASIC11.16□□□□□ -0.621e-6■■□□□ 12.1
RPS3P23396 NDUFA3-208ENST00000422029 694 ntTSL 310.8□□□□□ -0.681e-6■■□□□ 12.1
RPS3P23396 NDUFA3-202ENST00000391762 435 ntTSL 5 BASIC8.85□□□□□ -0.991e-6■■□□□ 12.1
RPS3P23396 INTS7-201ENST00000366992 3380 ntTSL 2 BASIC8.67□□□□□ -1.021e-6■■□□□ 12.1
RPS3P23396 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.081e-6■■□□□ 12.1
RPS3P23396 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC7.43□□□□□ -1.221e-6■■□□□ 12.1
RPS3P23396 INTS7-211ENST00000619805 571 ntTSL 47.36□□□□□ -1.231e-6■■□□□ 12.1
RPS3P23396 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC7.22□□□□□ -1.251e-6■■□□□ 12.1
RPS3P23396 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.261e-6■■□□□ 12.1
RPS3P23396 UQCRB-205ENST00000518876 3968 ntTSL 1 (best)6.52□□□□□ -1.371e-6■■□□□ 12.1
Retrieved 100 of 24,271 protein–RNA pairs in 213.7 ms