RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 NISCHQ9Y2I1 1504 aa46.36■■■■■ 5.01
PTCD3-210ENST00000473829 CCDC180Q9P1Z9 1646 aa41.28■■■■■ 4.2
PTCD3-210ENST00000473829 ABCC9O60706 1549 aa40.45■■■■■ 4.07
PTCD3-210ENST00000473829 RB1CC1Q8TDY2 1594 aa38.84■■■■□ 3.81
PTCD3-210ENST00000473829 NACADO15069 1562 aa38.77■■■■□ 3.8
PTCD3-210ENST00000473829 DCAF8L2P0C7V8 631 aa38.65■■■■□ 3.78
PTCD3-210ENST00000473829 ZCCHC6Q5VYS8 1495 aaKnown RBP38.63■■■■□ 3.77
PTCD3-210ENST00000473829 MYO15BQ96JP2 1530 aa38.5■■■■□ 3.75
PTCD3-210ENST00000473829 DCAF1Q9Y4B6 1507 aa38.33■■■■□ 3.73
PTCD3-210ENST00000473829 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
PTCD3-210ENST00000473829 BICRAQ9NZM4 1560 aa37.76■■■■□ 3.63
PTCD3-210ENST00000473829 PABPN1Q86U42 306 aaKnown RBP eCLIP37.74■■■■□ 3.63
PTCD3-210ENST00000473829 SCRIBQ14160 1630 aa37.69■■■■□ 3.62
PTCD3-210ENST00000473829 SHROOM4Q9ULL8 1493 aa37.24■■■■□ 3.55
PTCD3-210ENST00000473829 DNAJC5BQ9UF47 199 aa37.19■■■■□ 3.54
PTCD3-210ENST00000473829 EIF4G1Q04637 1599 aaKnown RBP36.73■■■■□ 3.47
PTCD3-210ENST00000473829 CC2D2AQ9P2K1 1620 aa36.6■■■■□ 3.45
PTCD3-210ENST00000473829 CECR2Q9BXF3 1484 aa36.32■■■■□ 3.41
PTCD3-210ENST00000473829 SMARCA4P51532 1647 aa36.02■■■■□ 3.36
PTCD3-210ENST00000473829 BAZ1AQ9NRL2 1556 aaPredicted RBP35.93■■■■□ 3.34
PTCD3-210ENST00000473829 ATAD2BQ9ULI0 1458 aa35.81■■■■□ 3.32
PTCD3-210ENST00000473829 MROH2BQ7Z745 1585 aa35.77■■■■□ 3.32
PTCD3-210ENST00000473829 NCAPD3P42695 1498 aa35.77■■■■□ 3.32
PTCD3-210ENST00000473829 SMARCA2P51531 1590 aa35.73■■■■□ 3.31
PTCD3-210ENST00000473829 PEG3Q9GZU2 1588 aa35.65■■■■□ 3.3
PTCD3-210ENST00000473829 HMGXB3Q12766 1538 aa35.62■■■■□ 3.29
PTCD3-210ENST00000473829 BAZ1BQ9UIG0 1483 aaKnown RBP35.49■■■■□ 3.27
PTCD3-210ENST00000473829 WIZO95785 1651 aa35.4■■■■□ 3.26
PTCD3-210ENST00000473829 RSF1Q96T23 1441 aaPredicted RBP35.29■■■■□ 3.24
PTCD3-210ENST00000473829 NESP48681 1621 aa35.02■■■■□ 3.2
PTCD3-210ENST00000473829 TOP2AP11388 1531 aaKnown RBP34.98■■■■□ 3.19
PTCD3-210ENST00000473829 LAMC3Q9Y6N6 1575 aa34.86■■■■□ 3.17
PTCD3-210ENST00000473829 ERCC6Q03468 1493 aa34.81■■■■□ 3.16
PTCD3-210ENST00000473829 CADPSQ9ULU8 1353 aa34.71■■■■□ 3.15
PTCD3-210ENST00000473829 KIF21AQ7Z4S6 1674 aa34.63■■■■□ 3.13
PTCD3-210ENST00000473829 PDS5BQ9NTI5 1447 aa34.56■■■■□ 3.12
PTCD3-210ENST00000473829 CCDC88BA6NC98 1476 aa34.55■■■■□ 3.12
PTCD3-210ENST00000473829 THOC2Q8NI27 1593 aaKnown RBP34.53■■■■□ 3.12
PTCD3-210ENST00000473829 CFTRP13569 1480 aa34.52■■■■□ 3.12
PTCD3-210ENST00000473829 CUX2O14529 1486 aa34.47■■■■□ 3.11
PTCD3-210ENST00000473829 FANCD2Q9BXW9 1451 aa34.35■■■■□ 3.09
PTCD3-210ENST00000473829 PRDM2Q13029 1718 aa34.34■■■■□ 3.09
PTCD3-210ENST00000473829 CEP164Q9UPV0 1460 aa34.31■■■■□ 3.08
PTCD3-210ENST00000473829 SUPT5HO00267 1087 aaKnown RBP34.29■■■■□ 3.08
PTCD3-210ENST00000473829 MRC2Q9UBG0 1479 aa34.27■■■■□ 3.08
PTCD3-210ENST00000473829 WDR62O43379 1518 aa34.2■■■■□ 3.06
PTCD3-210ENST00000473829 URB2Q14146 1524 aaKnown RBP34.05■■■■□ 3.04
PTCD3-210ENST00000473829 TOPBP1Q92547 1522 aa33.81■■■■□ 3
PTCD3-210ENST00000473829 DNMBPQ6XZF7 1577 aa33.77■■■■□ 3
PTCD3-210ENST00000473829 ABCC8Q09428 1581 aa33.71■■■□□ 2.99
PTCD3-210ENST00000473829 IFT140Q96RY7 1462 aa33.57■■■□□ 2.97
PTCD3-210ENST00000473829 CUX1P39880 1505 aa33.56■■■□□ 2.96
PTCD3-210ENST00000473829 POLA1P09884 1462 aaPredicted RBP33.52■■■□□ 2.96
PTCD3-210ENST00000473829 ZNF608Q9ULD9 1512 aaPredicted RBP33.5■■■□□ 2.95
PTCD3-210ENST00000473829 TARBP1Q13395 1621 aaKnown RBP33.49■■■□□ 2.95
PTCD3-210ENST00000473829 DNAJC5Q9H3Z4 198 aa33.46■■■□□ 2.95
PTCD3-210ENST00000473829 FGD5Q6ZNL6 1462 aa33.44■■■□□ 2.94
PTCD3-210ENST00000473829 EIF4G3O43432 1585 aaKnown RBP33.38■■■□□ 2.93
PTCD3-210ENST00000473829 RAD54L2Q9Y4B4 1467 aa33.38■■■□□ 2.93
PTCD3-210ENST00000473829 SOGA1O94964 1423 aa33.33■■■□□ 2.93
PTCD3-210ENST00000473829 SYNJ1O43426 1573 aa33.26■■■□□ 2.92
PTCD3-210ENST00000473829 AQRO60306 1485 aaKnown RBP eCLIP33.26■■■□□ 2.922e-7■■■■■ 29.4
PTCD3-210ENST00000473829 BIVM-ERCC5R4GMW8 1640 aa33.26■■■□□ 2.91
PTCD3-210ENST00000473829 WRNQ14191 1432 aaPredicted RBP eCLIP33.25■■■□□ 2.91
PTCD3-210ENST00000473829 WDR97A6NE52 1622 aa33.24■■■□□ 2.91
PTCD3-210ENST00000473829 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
PTCD3-210ENST00000473829 TDRD9Q8NDG6 1382 aaKnown RBP33.17■■■□□ 2.9
PTCD3-210ENST00000473829 ABCA10Q8WWZ4 1543 aa33.08■■■□□ 2.89
PTCD3-210ENST00000473829 ABCA5Q8WWZ7 1642 aa33.02■■■□□ 2.88
PTCD3-210ENST00000473829 CHD1O14646 1710 aa32.99■■■□□ 2.87
PTCD3-210ENST00000473829 PBRM1Q86U86 1689 aa32.98■■■□□ 2.87
PTCD3-210ENST00000473829 SNAPC4Q5SXM2 1469 aa32.98■■■□□ 2.87
PTCD3-210ENST00000473829 GRIN2BQ13224 1484 aa32.96■■■□□ 2.87
PTCD3-210ENST00000473829 GAPVD1Q14C86 1478 aa32.96■■■□□ 2.87
PTCD3-210ENST00000473829 OSCARQ8IYS5 282 aa32.95■■■□□ 2.87
PTCD3-210ENST00000473829 MAGI1Q96QZ7 1491 aaPredicted RBP32.88■■■□□ 2.85
PTCD3-210ENST00000473829 FBLN2P98095 1184 aa32.8■■■□□ 2.84
PTCD3-210ENST00000473829 SYNJ2O15056 1496 aa32.76■■■□□ 2.84
PTCD3-210ENST00000473829 ADAMTS12P58397 1594 aa32.7■■■□□ 2.83
PTCD3-210ENST00000473829 ERICH3Q5RHP9 1530 aa32.68■■■□□ 2.82
PTCD3-210ENST00000473829 CHMP7Q8WUX9 453 aaPredicted RBP32.68■■■□□ 2.82
PTCD3-210ENST00000473829 CLASP1Q7Z460 1538 aa32.61■■■□□ 2.81
PTCD3-210ENST00000473829 RIMBP3CA6NJZ7 1639 aa32.59■■■□□ 2.81
PTCD3-210ENST00000473829 RIMBP3BA6NNM3 1639 aa32.59■■■□□ 2.81
PTCD3-210ENST00000473829 RIMBP3Q9UFD9 1639 aa32.59■■■□□ 2.81
PTCD3-210ENST00000473829 GRIN2AQ12879 1464 aa32.56■■■□□ 2.8
PTCD3-210ENST00000473829 FHAD1B1AJZ9 1412 aa32.56■■■□□ 2.8
PTCD3-210ENST00000473829 ARHGEF11O15085 1522 aa32.55■■■□□ 2.8
PTCD3-210ENST00000473829 KIF27Q86VH2 1401 aa32.52■■■□□ 2.8
PTCD3-210ENST00000473829 CEP170Q5SW79 1584 aa32.46■■■□□ 2.79
PTCD3-210ENST00000473829 IGF1RP08069 1367 aa32.43■■■□□ 2.78
PTCD3-210ENST00000473829 NUP160Q12769 1436 aa32.42■■■□□ 2.78
PTCD3-210ENST00000473829 CUL7Q14999 1698 aa32.4■■■□□ 2.78
PTCD3-210ENST00000473829 TRIM41Q8WV44 630 aa32.35■■■□□ 2.77
PTCD3-210ENST00000473829 RUSC2Q8N2Y8 1516 aa32.32■■■□□ 2.76
PTCD3-210ENST00000473829 ARAP1Q96P48 1450 aa32.3■■■□□ 2.76
PTCD3-210ENST00000473829 SHROOM2Q13796 1616 aa32.23■■■□□ 2.75
PTCD3-210ENST00000473829 CARMIL1Q5VZK9 1371 aa32.21■■■□□ 2.75
PTCD3-210ENST00000473829 ERCC6L2Q5T890 1561 aa32.19■■■□□ 2.74
PTCD3-210ENST00000473829 CYB5RLQ6IPT4 315 aa32.17■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms