RNA–Protein interactions for RNA: ENST00000602503.1

KDM1A-206, Transcript of lysine demethylase 1A, humanhuman

Gene KDM1A, Length 2,810 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1A-206ENST00000602503 AEBP2Q6ZN18 517 aaPredicted RBP15.85■□□□□ 0.13
KDM1A-206ENST00000602503 CHIC1Q5VXU3 224 aa15.48■□□□□ 0.07
KDM1A-206ENST00000602503 NISCHQ9Y2I1 1504 aa14.86□□□□□ -0.03
KDM1A-206ENST00000602503 PELP1Q8IZL8 1130 aaKnown RBP13.71□□□□□ -0.21
KDM1A-206ENST00000602503 PHF23Q9BUL5 403 aaPredicted RBP13.61□□□□□ -0.23
KDM1A-206ENST00000602503 MYT1Q01538 1121 aa13.47□□□□□ -0.25
KDM1A-206ENST00000602503 SENP3Q9H4L4 574 aaPredicted RBP13.45□□□□□ -0.26
KDM1A-206ENST00000602503 HRCP23327 699 aa13.12□□□□□ -0.31
KDM1A-206ENST00000602503 CCDC180Q9P1Z9 1646 aa12.84□□□□□ -0.35
KDM1A-206ENST00000602503 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
KDM1A-206ENST00000602503 DCAF8L2P0C7V8 631 aa12.63□□□□□ -0.39
KDM1A-206ENST00000602503 ZCCHC6Q5VYS8 1495 aaKnown RBP12.61□□□□□ -0.39
KDM1A-206ENST00000602503 PLPPR3Q6T4P5 718 aa12.55□□□□□ -0.4
KDM1A-206ENST00000602503 SCAF1Q9H7N4 1312 aaKnown RBP12.53□□□□□ -0.4
KDM1A-206ENST00000602503 PPARGC1BQ86YN6 1023 aaKnown RBP12.49□□□□□ -0.41
KDM1A-206ENST00000602503 FOXD1Q16676 465 aa12.48□□□□□ -0.41
KDM1A-206ENST00000602503 PCGF6Q9BYE7 350 aa12.45□□□□□ -0.42
KDM1A-206ENST00000602503 SHROOM4Q9ULL8 1493 aa12.43□□□□□ -0.42
KDM1A-206ENST00000602503 ZEB1P37275 1124 aaPredicted RBP12.42□□□□□ -0.42
KDM1A-206ENST00000602503 DCAF1Q9Y4B6 1507 aa12.41□□□□□ -0.42
KDM1A-206ENST00000602503 ABCC9O60706 1549 aa12.32□□□□□ -0.44
KDM1A-206ENST00000602503 ACIN1Q9UKV3 1341 aaKnown RBP12.23□□□□□ -0.45
KDM1A-206ENST00000602503 CENPBP07199 599 aaPredicted RBP12.17□□□□□ -0.46
KDM1A-206ENST00000602503 TRIM26Q12899 539 aaPredicted RBP12.16□□□□□ -0.46
KDM1A-206ENST00000602503 MYO15BQ96JP2 1530 aa12.14□□□□□ -0.47
KDM1A-206ENST00000602503 GTF3C3Q9Y5Q9 886 aa12.05□□□□□ -0.48
KDM1A-206ENST00000602503 SUPT5HO00267 1087 aaKnown RBP12.04□□□□□ -0.48
KDM1A-206ENST00000602503 BCL11AQ9H165 835 aa12.04□□□□□ -0.48
KDM1A-206ENST00000602503 ERICH6Q7L0X2 663 aa12.04□□□□□ -0.48
KDM1A-206ENST00000602503 NEUROD1Q13562 356 aa12.02□□□□□ -0.49
KDM1A-206ENST00000602503 PPP6R1Q9UPN7 881 aa11.99□□□□□ -0.49
KDM1A-206ENST00000602503 ADRA2BP18089 450 aa11.96□□□□□ -0.5
KDM1A-206ENST00000602503 PRKCSHP14314 528 aaPredicted RBP11.91□□□□□ -0.5
KDM1A-206ENST00000602503 SCRIBQ14160 1630 aa11.87□□□□□ -0.51
KDM1A-206ENST00000602503 ANP32EQ9BTT0 268 aa11.84□□□□□ -0.51
KDM1A-206ENST00000602503 FAM9AQ8IZU1 332 aaPredicted RBP11.84□□□□□ -0.51
KDM1A-206ENST00000602503 NACADO15069 1562 aa11.79□□□□□ -0.52
KDM1A-206ENST00000602503 PABPN1Q86U42 306 aaKnown RBP eCLIP11.78□□□□□ -0.52
KDM1A-206ENST00000602503 CLSPNQ9HAW4 1339 aa11.78□□□□□ -0.52
KDM1A-206ENST00000602503 APLP2Q06481 763 aa11.77□□□□□ -0.53
KDM1A-206ENST00000602503 DIEXFQ68CQ4 756 aaKnown RBP11.73□□□□□ -0.53
KDM1A-206ENST00000602503 PIAS4Q8N2W9 510 aaPredicted RBP11.73□□□□□ -0.53
KDM1A-206ENST00000602503 RB1CC1Q8TDY2 1594 aa11.68□□□□□ -0.54
KDM1A-206ENST00000602503 RSF1Q96T23 1441 aaPredicted RBP11.67□□□□□ -0.54
KDM1A-206ENST00000602503 LOC105371045A0A1W2PR82 267 aa11.59□□□□□ -0.55
KDM1A-206ENST00000602503 CSRNP3Q8WYN3 585 aa11.56□□□□□ -0.56
KDM1A-206ENST00000602503 TRIM41Q8WV44 630 aa11.55□□□□□ -0.56
KDM1A-206ENST00000602503 MSH5O43196 834 aa11.53□□□□□ -0.56
KDM1A-206ENST00000602503 CECR2Q9BXF3 1484 aa11.52□□□□□ -0.57
KDM1A-206ENST00000602503 UNC13AQ9UPW8 1703 aa11.5□□□□□ -0.57
KDM1A-206ENST00000602503 MYT1LQ9UL68 1186 aa11.49□□□□□ -0.57
KDM1A-206ENST00000602503 CCER1Q8TC90 406 aaPredicted RBP11.48□□□□□ -0.57
KDM1A-206ENST00000602503 BAZ1AQ9NRL2 1556 aaPredicted RBP11.48□□□□□ -0.57
KDM1A-206ENST00000602503 TSHZ2Q9NRE2 1034 aa11.47□□□□□ -0.57
KDM1A-206ENST00000602503 ZNF316A6NFI3 1004 aaPredicted RBP11.45□□□□□ -0.58
KDM1A-206ENST00000602503 MROH2BQ7Z745 1585 aa11.44□□□□□ -0.58
KDM1A-206ENST00000602503 SUPT16HQ9Y5B9 1047 aaKnown RBP11.41□□□□□ -0.58
KDM1A-206ENST00000602503 EIF4G1Q04637 1599 aaKnown RBP11.39□□□□□ -0.59
KDM1A-206ENST00000602503 YTHDC1Q96MU7 727 aaKnown RBP11.39□□□□□ -0.59
KDM1A-206ENST00000602503 WIZO95785 1651 aa11.38□□□□□ -0.59
KDM1A-206ENST00000602503 BICRAQ9NZM4 1560 aa11.38□□□□□ -0.59
KDM1A-206ENST00000602503 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
KDM1A-206ENST00000602503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.33□□□□□ -0.6
KDM1A-206ENST00000602503 SMARCA4P51532 1647 aa11.33□□□□□ -0.6
KDM1A-206ENST00000602503 ERICH6BQ5W0A0 696 aa11.3□□□□□ -0.6
KDM1A-206ENST00000602503 MIER1Q8N108 512 aa11.29□□□□□ -0.6
KDM1A-206ENST00000602503 PEG3Q9GZU2 1588 aa11.24□□□□□ -0.61
KDM1A-206ENST00000602503 UBE2Q2Q8WVN8 375 aa11.23□□□□□ -0.61
KDM1A-206ENST00000602503 SMARCA2P51531 1590 aa11.23□□□□□ -0.61
KDM1A-206ENST00000602503 EHMT2Q96KQ7 1210 aa11.22□□□□□ -0.61
KDM1A-206ENST00000602503 EEA1Q15075 1411 aa11.21□□□□□ -0.61
KDM1A-206ENST00000602503 RBM19Q9Y4C8 960 aaKnown RBP11.18□□□□□ -0.62
KDM1A-206ENST00000602503 CCDC88BA6NC98 1476 aa11.17□□□□□ -0.62
KDM1A-206ENST00000602503 FANCIQ9NVI1 1328 aa11.16□□□□□ -0.62
KDM1A-206ENST00000602503 WRNQ14191 1432 aaPredicted RBP eCLIP11.15□□□□□ -0.63
KDM1A-206ENST00000602503 DNAJC5BQ9UF47 199 aa11.14□□□□□ -0.63
KDM1A-206ENST00000602503 ANO8Q9HCE9 1232 aaPredicted RBP11.13□□□□□ -0.63
KDM1A-206ENST00000602503 SLC24A1O60721 1099 aa11.12□□□□□ -0.63
KDM1A-206ENST00000602503 DEKP35659 375 aaKnown RBP11.09□□□□□ -0.63
KDM1A-206ENST00000602503 TNIKQ9UKE5 1360 aa11.07□□□□□ -0.64
KDM1A-206ENST00000602503 EIF5BO60841 1220 aaKnown RBP11.06□□□□□ -0.64
KDM1A-206ENST00000602503 ABCC8Q09428 1581 aa11.04□□□□□ -0.64
KDM1A-206ENST00000602503 NEFLP07196 543 aa11.04□□□□□ -0.64
KDM1A-206ENST00000602503 PPP4R3CPQ6ZMV5 832 aa11.04□□□□□ -0.64
KDM1A-206ENST00000602503 ATAD2BQ9ULI0 1458 aa11.03□□□□□ -0.64
KDM1A-206ENST00000602503 KIF21BO75037 1637 aa11.02□□□□□ -0.65
KDM1A-206ENST00000602503 DAXXQ9UER7 740 aaPredicted RBP11.01□□□□□ -0.65
KDM1A-206ENST00000602503 GOLGA3Q08378 1498 aa11□□□□□ -0.65
KDM1A-206ENST00000602503 BAZ1BQ9UIG0 1483 aaKnown RBP10.99□□□□□ -0.65
KDM1A-206ENST00000602503 CEP162Q5TB80 1403 aa10.99□□□□□ -0.65
KDM1A-206ENST00000602503 SALL2Q9Y467 1007 aaPredicted RBP10.98□□□□□ -0.65
KDM1A-206ENST00000602503 FKBP8Q14318 412 aa10.97□□□□□ -0.65
KDM1A-206ENST00000602503 CEP164Q9UPV0 1460 aa10.96□□□□□ -0.66
KDM1A-206ENST00000602503 CC2D2AQ9P2K1 1620 aa10.95□□□□□ -0.66
KDM1A-206ENST00000602503 SOGA1O94964 1423 aa10.94□□□□□ -0.66
KDM1A-206ENST00000602503 CDK11AQ9UQ88 783 aaPredicted RBP10.93□□□□□ -0.66
KDM1A-206ENST00000602503 HMGXB3Q12766 1538 aa10.91□□□□□ -0.66
KDM1A-206ENST00000602503 BIVM-ERCC5R4GMW8 1640 aa10.91□□□□□ -0.66
KDM1A-206ENST00000602503 SYNJ1O43426 1573 aa10.91□□□□□ -0.66
KDM1A-206ENST00000602503 TOP2BQ02880 1626 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms