RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 DCAF8L2P0C7V8 631 aa15.2■□□□□ 0.02
PTCD3-201ENST00000254630 NISCHQ9Y2I1 1504 aa14.59□□□□□ -0.07
PTCD3-201ENST00000254630 SUPT5HO00267 1087 aaKnown RBP14.31□□□□□ -0.12
PTCD3-201ENST00000254630 SHROOM4Q9ULL8 1493 aa14.2□□□□□ -0.14
PTCD3-201ENST00000254630 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
PTCD3-201ENST00000254630 APLP2Q06481 763 aa13.74□□□□□ -0.21
PTCD3-201ENST00000254630 FAM9AQ8IZU1 332 aaPredicted RBP13.65□□□□□ -0.22
PTCD3-201ENST00000254630 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
PTCD3-201ENST00000254630 TTBK1Q5TCY1 1321 aaPredicted RBP13.49□□□□□ -0.25
PTCD3-201ENST00000254630 RANGAP1P46060 587 aaPredicted RBP13.4□□□□□ -0.26
PTCD3-201ENST00000254630 ATP1B4Q9UN42 357 aaPredicted RBP13.34□□□□□ -0.27
PTCD3-201ENST00000254630 TRIM41Q8WV44 630 aa13.3□□□□□ -0.28
PTCD3-201ENST00000254630 PCGF6Q9BYE7 350 aa13.25□□□□□ -0.29
PTCD3-201ENST00000254630 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
PTCD3-201ENST00000254630 CCER1Q8TC90 406 aaPredicted RBP13.16□□□□□ -0.3
PTCD3-201ENST00000254630 ZEB1P37275 1124 aaPredicted RBP13.15□□□□□ -0.3
PTCD3-201ENST00000254630 ERICH6Q7L0X2 663 aa13.1□□□□□ -0.31
PTCD3-201ENST00000254630 CENPBP07199 599 aaPredicted RBP13.07□□□□□ -0.32
PTCD3-201ENST00000254630 MYT1LQ9UL68 1186 aa12.9□□□□□ -0.34
PTCD3-201ENST00000254630 NEFLP07196 543 aa12.9□□□□□ -0.35
PTCD3-201ENST00000254630 PPARGC1BQ86YN6 1023 aaKnown RBP12.89□□□□□ -0.35
PTCD3-201ENST00000254630 YTHDC1Q96MU7 727 aaKnown RBP12.87□□□□□ -0.35
PTCD3-201ENST00000254630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.86□□□□□ -0.35
PTCD3-201ENST00000254630 HNRNPUL2Q1KMD3 747 aaKnown RBP12.86□□□□□ -0.35
PTCD3-201ENST00000254630 ITGAEP38570 1179 aa12.77□□□□□ -0.36
PTCD3-201ENST00000254630 TRIM26Q12899 539 aaPredicted RBP12.76□□□□□ -0.37
PTCD3-201ENST00000254630 POLR3GLQ9BT43 218 aa12.73□□□□□ -0.37
PTCD3-201ENST00000254630 ABCC9O60706 1549 aa12.69□□□□□ -0.38
PTCD3-201ENST00000254630 CHIC1Q5VXU3 224 aa12.65□□□□□ -0.38
PTCD3-201ENST00000254630 LOC105371045A0A1W2PR82 267 aa12.58□□□□□ -0.4
PTCD3-201ENST00000254630 PABPN1Q86U42 306 aaKnown RBP eCLIP12.58□□□□□ -0.44e-6■□□□□ 9.3
PTCD3-201ENST00000254630 SLC4A1APQ9BWU0 796 aaKnown RBP12.58□□□□□ -0.4
PTCD3-201ENST00000254630 DAXXQ9UER7 740 aaPredicted RBP12.57□□□□□ -0.4
PTCD3-201ENST00000254630 CNGB1Q14028 1251 aaPredicted RBP12.54□□□□□ -0.4
PTCD3-201ENST00000254630 FAM50AQ14320 339 aaKnown RBP12.51□□□□□ -0.41
PTCD3-201ENST00000254630 HRCP23327 699 aa12.49□□□□□ -0.41
PTCD3-201ENST00000254630 TRIM52Q96A61 297 aa12.45□□□□□ -0.42
PTCD3-201ENST00000254630 MYT1Q01538 1121 aa12.4□□□□□ -0.43
PTCD3-201ENST00000254630 FBLN2P98095 1184 aa12.36□□□□□ -0.43
PTCD3-201ENST00000254630 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
PTCD3-201ENST00000254630 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
PTCD3-201ENST00000254630 ZNF316A6NFI3 1004 aaPredicted RBP12.31□□□□□ -0.44
PTCD3-201ENST00000254630 CLSPNQ9HAW4 1339 aa12.3□□□□□ -0.44
PTCD3-201ENST00000254630 DIEXFQ68CQ4 756 aaKnown RBP12.28□□□□□ -0.44
PTCD3-201ENST00000254630 ZNF326Q5BKZ1 582 aaKnown RBP12.27□□□□□ -0.45
PTCD3-201ENST00000254630 BCANQ96GW7 911 aa12.21□□□□□ -0.46
PTCD3-201ENST00000254630 CCDC180Q9P1Z9 1646 aa12.19□□□□□ -0.46
PTCD3-201ENST00000254630 ANP32CO43423 234 aa12.19□□□□□ -0.46
PTCD3-201ENST00000254630 ARID3CA6NKF2 412 aa12.19□□□□□ -0.46
PTCD3-201ENST00000254630 P3H3Q8IVL6 736 aa12.19□□□□□ -0.46
PTCD3-201ENST00000254630 RTL5Q5HYW3 569 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-201ENST00000254630 ZBTB47Q9UFB7 747 aaPredicted RBP12.15□□□□□ -0.46
PTCD3-201ENST00000254630 SLC24A1O60721 1099 aa12.15□□□□□ -0.46
PTCD3-201ENST00000254630 ZNF777Q9ULD5 760 aaPredicted RBP12.13□□□□□ -0.47
PTCD3-201ENST00000254630 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
PTCD3-201ENST00000254630 NEFMP07197 916 aa12.09□□□□□ -0.47
PTCD3-201ENST00000254630 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
PTCD3-201ENST00000254630 CDK11AQ9UQ88 783 aaPredicted RBP12.06□□□□□ -0.48
PTCD3-201ENST00000254630 CSRNP3Q8WYN3 585 aa12.06□□□□□ -0.48
PTCD3-201ENST00000254630 ESF1Q9H501 851 aaKnown RBP12.05□□□□□ -0.48
PTCD3-201ENST00000254630 BCL11AQ9H165 835 aa12.01□□□□□ -0.49
PTCD3-201ENST00000254630 RB1CC1Q8TDY2 1594 aa12.01□□□□□ -0.49
PTCD3-201ENST00000254630 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
PTCD3-201ENST00000254630 PLPPR3Q6T4P5 718 aa11.97□□□□□ -0.49
PTCD3-201ENST00000254630 NPM1P06748 294 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTCD3-201ENST00000254630 CHGAP10645 457 aaKnown RBP11.96□□□□□ -0.49
PTCD3-201ENST00000254630 GTF3C3Q9Y5Q9 886 aa11.94□□□□□ -0.5
PTCD3-201ENST00000254630 TONSLQ96HA7 1378 aa11.93□□□□□ -0.5
PTCD3-201ENST00000254630 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.515e-7■□□□□ 10.9
PTCD3-201ENST00000254630 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
PTCD3-201ENST00000254630 ANP32AP39687 249 aaKnown RBP11.84□□□□□ -0.51
PTCD3-201ENST00000254630 CHIC2Q9UKJ5 165 aa11.83□□□□□ -0.52
PTCD3-201ENST00000254630 CHMP7Q8WUX9 453 aaPredicted RBP11.82□□□□□ -0.52
PTCD3-201ENST00000254630 NPM2Q86SE8 214 aaKnown RBP11.81□□□□□ -0.52
PTCD3-201ENST00000254630 NACADO15069 1562 aa11.79□□□□□ -0.52
PTCD3-201ENST00000254630 MTUS2Q5JR59 1369 aa11.79□□□□□ -0.52
PTCD3-201ENST00000254630 FAM9BQ8IZU0 186 aa11.76□□□□□ -0.53
PTCD3-201ENST00000254630 BAZ1BQ9UIG0 1483 aaKnown RBP11.76□□□□□ -0.53
PTCD3-201ENST00000254630 ACIN1Q9UKV3 1341 aaKnown RBP11.75□□□□□ -0.53
PTCD3-201ENST00000254630 SCAF1Q9H7N4 1312 aaKnown RBP11.75□□□□□ -0.53
PTCD3-201ENST00000254630 TSPY4P0CV99 314 aa11.74□□□□□ -0.53
PTCD3-201ENST00000254630 TSPY10P0CW01 314 aa11.74□□□□□ -0.53
PTCD3-201ENST00000254630 WDR43Q15061 677 aaKnown RBP eCLIP11.74□□□□□ -0.53
PTCD3-201ENST00000254630 GOLGA3Q08378 1498 aa11.74□□□□□ -0.53
PTCD3-201ENST00000254630 KDM2AQ9Y2K7 1162 aa11.74□□□□□ -0.53
PTCD3-201ENST00000254630 CLIP1P30622 1438 aa11.73□□□□□ -0.53
PTCD3-201ENST00000254630 HNRNPUQ00839 825 aaKnown RBP eCLIP11.73□□□□□ -0.53
PTCD3-201ENST00000254630 FKBP8Q14318 412 aa11.72□□□□□ -0.53
PTCD3-201ENST00000254630 RSF1Q96T23 1441 aaPredicted RBP11.72□□□□□ -0.53
PTCD3-201ENST00000254630 DDX10Q13206 875 aaKnown RBP11.72□□□□□ -0.53
PTCD3-201ENST00000254630 HSP90AA1P07900 732 aaKnown RBP11.71□□□□□ -0.53
PTCD3-201ENST00000254630 UPF2Q9HAU5 1272 aaKnown RBP11.71□□□□□ -0.53
PTCD3-201ENST00000254630 SALL2Q9Y467 1007 aaPredicted RBP11.7□□□□□ -0.54
PTCD3-201ENST00000254630 ERCC6Q03468 1493 aa11.7□□□□□ -0.54
PTCD3-201ENST00000254630 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.69□□□□□ -0.54
PTCD3-201ENST00000254630 TMC1Q8TDI8 760 aa11.69□□□□□ -0.54
PTCD3-201ENST00000254630 ZBTB7CA1YPR0 619 aa11.69□□□□□ -0.54
PTCD3-201ENST00000254630 ANP32BQ92688 251 aaKnown RBP11.67□□□□□ -0.54
PTCD3-201ENST00000254630 KCNH8Q96L42 1107 aa11.67□□□□□ -0.54
PTCD3-201ENST00000254630 PPP1R15AO75807 674 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms