Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.22■□□□□ 0.19
VAPBO95292 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 GPX1P2-201ENST00000429271 606 ntBASIC16.22■□□□□ 0.19
VAPBO95292 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.22■□□□□ 0.19
VAPBO95292 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.22■□□□□ 0.19
VAPBO95292 AC098859.1-201ENST00000502915 1238 ntBASIC16.22■□□□□ 0.19
VAPBO95292 PGAM5P1-201ENST00000518923 814 ntBASIC16.22■□□□□ 0.19
VAPBO95292 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 AC105233.2-201ENST00000523697 349 ntBASIC16.22■□□□□ 0.19
VAPBO95292 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.22■□□□□ 0.19
VAPBO95292 FAM86C2P-203ENST00000528684 1004 ntBASIC16.22■□□□□ 0.19
VAPBO95292 AF228730.5-201ENST00000530288 346 ntBASIC16.22■□□□□ 0.19
VAPBO95292 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.22■□□□□ 0.19
VAPBO95292 AC027307.2-201ENST00000591252 911 ntBASIC16.22■□□□□ 0.19
VAPBO95292 SPTSSB-204ENST00000617024 1292 ntBASIC16.22■□□□□ 0.19
VAPBO95292 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 FOXO1B-201ENST00000504678 1527 ntBASIC16.22■□□□□ 0.19
VAPBO95292 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
VAPBO95292 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
VAPBO95292 DBET-201ENST00000630918 3363 ntBASIC16.22■□□□□ 0.19
VAPBO95292 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.22■□□□□ 0.19
VAPBO95292 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VAPBO95292 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 AC144831.1-201ENST00000573312 2656 ntBASIC16.21■□□□□ 0.19
VAPBO95292 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 MCCD1P2-201ENST00000423228 335 ntBASIC16.21■□□□□ 0.19
VAPBO95292 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.21■□□□□ 0.19
VAPBO95292 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.21■□□□□ 0.19
VAPBO95292 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 AC008267.7-201ENST00000624570 1194 ntBASIC16.21■□□□□ 0.19
VAPBO95292 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VAPBO95292 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.21■□□□□ 0.19
VAPBO95292 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VAPBO95292 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
VAPBO95292 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VAPBO95292 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VAPBO95292 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VAPBO95292 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VAPBO95292 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
VAPBO95292 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.21■□□□□ 0.18
VAPBO95292 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VAPBO95292 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.2■□□□□ 0.18
VAPBO95292 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VAPBO95292 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VAPBO95292 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms