RNA–Protein interactions for RNA: ENST00000539721.5

TRAF3-204, Transcript of TNF receptor associated factor 3, humanhuman

TSL 2 BASIC

Gene TRAF3, Length 1,786 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-204ENST00000539721 NISCHQ9Y2I1 1504 aa37.47■■■■□ 3.59
TRAF3-204ENST00000539721 CCDC180Q9P1Z9 1646 aa32.93■■■□□ 2.86
TRAF3-204ENST00000539721 ZCCHC6Q5VYS8 1495 aaKnown RBP31.41■■■□□ 2.62
TRAF3-204ENST00000539721 ABCC9O60706 1549 aa31.4■■■□□ 2.62
TRAF3-204ENST00000539721 DCAF8L2P0C7V8 631 aa31.02■■■□□ 2.56
TRAF3-204ENST00000539721 DCAF1Q9Y4B6 1507 aa30.99■■■□□ 2.55
TRAF3-204ENST00000539721 MYO15BQ96JP2 1530 aa30.77■■■□□ 2.52
TRAF3-204ENST00000539721 NACADO15069 1562 aa30.71■■■□□ 2.51
TRAF3-204ENST00000539721 RB1CC1Q8TDY2 1594 aa30.56■■■□□ 2.48
TRAF3-204ENST00000539721 SHROOM4Q9ULL8 1493 aa30.26■■■□□ 2.43
TRAF3-204ENST00000539721 SCRIBQ14160 1630 aa30.19■■■□□ 2.42
TRAF3-204ENST00000539721 UNC13AQ9UPW8 1703 aa29.95■■■□□ 2.38
TRAF3-204ENST00000539721 BICRAQ9NZM4 1560 aa29.6■■■□□ 2.33
TRAF3-204ENST00000539721 PABPN1Q86U42 306 aaKnown RBP eCLIP29.49■■■□□ 2.31
TRAF3-204ENST00000539721 CECR2Q9BXF3 1484 aa29.11■■■□□ 2.25
TRAF3-204ENST00000539721 BAZ1AQ9NRL2 1556 aaPredicted RBP28.99■■■□□ 2.23
TRAF3-204ENST00000539721 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
TRAF3-204ENST00000539721 SMARCA4P51532 1647 aa28.91■■■□□ 2.22
TRAF3-204ENST00000539721 SUPT5HO00267 1087 aaKnown RBP28.91■■■□□ 2.22
TRAF3-204ENST00000539721 RSF1Q96T23 1441 aaPredicted RBP28.88■■■□□ 2.21
TRAF3-204ENST00000539721 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
TRAF3-204ENST00000539721 WIZO95785 1651 aa28.69■■■□□ 2.18
TRAF3-204ENST00000539721 PEG3Q9GZU2 1588 aa28.57■■■□□ 2.16
TRAF3-204ENST00000539721 SMARCA2P51531 1590 aa28.5■■■□□ 2.15
TRAF3-204ENST00000539721 ATAD2BQ9ULI0 1458 aa28.49■■■□□ 2.15
TRAF3-204ENST00000539721 CC2D2AQ9P2K1 1620 aa28.43■■■□□ 2.14
TRAF3-204ENST00000539721 TOP2AP11388 1531 aaKnown RBP28.39■■■□□ 2.14
TRAF3-204ENST00000539721 BAZ1BQ9UIG0 1483 aaKnown RBP28.34■■■□□ 2.13
TRAF3-204ENST00000539721 NCAPD3P42695 1498 aa28.31■■■□□ 2.12
TRAF3-204ENST00000539721 HMGXB3Q12766 1538 aa28.28■■■□□ 2.12
TRAF3-204ENST00000539721 CCDC88BA6NC98 1476 aa28.06■■■□□ 2.08
TRAF3-204ENST00000539721 DNAJC5BQ9UF47 199 aa27.96■■■□□ 2.07
TRAF3-204ENST00000539721 CFTRP13569 1480 aa27.57■■■□□ 2
TRAF3-204ENST00000539721 CADPSQ9ULU8 1353 aa27.56■■■□□ 2
TRAF3-204ENST00000539721 PRDM2Q13029 1718 aa27.53■■■□□ 2
TRAF3-204ENST00000539721 CHIC1Q5VXU3 224 aa27.48■■□□□ 1.99
TRAF3-204ENST00000539721 LAMC3Q9Y6N6 1575 aa27.46■■□□□ 1.99
TRAF3-204ENST00000539721 NESP48681 1621 aa27.44■■□□□ 1.98
TRAF3-204ENST00000539721 ABCC8Q09428 1581 aa27.36■■□□□ 1.97
TRAF3-204ENST00000539721 FANCD2Q9BXW9 1451 aa27.27■■□□□ 1.96
TRAF3-204ENST00000539721 TRIM41Q8WV44 630 aa27.23■■□□□ 1.95
TRAF3-204ENST00000539721 PDS5BQ9NTI5 1447 aa27.23■■□□□ 1.95
TRAF3-204ENST00000539721 WRNQ14191 1432 aaPredicted RBP eCLIP27.22■■□□□ 1.95
TRAF3-204ENST00000539721 KIF21AQ7Z4S6 1674 aa27.17■■□□□ 1.94
TRAF3-204ENST00000539721 CEP164Q9UPV0 1460 aa27.15■■□□□ 1.94
TRAF3-204ENST00000539721 SYNJ1O43426 1573 aa27.15■■□□□ 1.94
TRAF3-204ENST00000539721 TOP2BQ02880 1626 aa27.08■■□□□ 1.93
TRAF3-204ENST00000539721 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
TRAF3-204ENST00000539721 CUX1P39880 1505 aa27.07■■□□□ 1.92
TRAF3-204ENST00000539721 DNMBPQ6XZF7 1577 aa26.99■■□□□ 1.91
TRAF3-204ENST00000539721 ERCC6Q03468 1493 aa26.98■■□□□ 1.91
TRAF3-204ENST00000539721 URB2Q14146 1524 aaKnown RBP26.94■■□□□ 1.9
TRAF3-204ENST00000539721 TOPBP1Q92547 1522 aa26.93■■□□□ 1.9
TRAF3-204ENST00000539721 MRC2Q9UBG0 1479 aa26.92■■□□□ 1.9
TRAF3-204ENST00000539721 FGD5Q6ZNL6 1462 aa26.85■■□□□ 1.89
TRAF3-204ENST00000539721 THOC2Q8NI27 1593 aaKnown RBP26.81■■□□□ 1.88
TRAF3-204ENST00000539721 WDR62O43379 1518 aa26.79■■□□□ 1.88
TRAF3-204ENST00000539721 POLA1P09884 1462 aaPredicted RBP26.77■■□□□ 1.88
TRAF3-204ENST00000539721 SOGA1O94964 1423 aa26.74■■□□□ 1.87
TRAF3-204ENST00000539721 FAM9AQ8IZU1 332 aaPredicted RBP26.71■■□□□ 1.87
TRAF3-204ENST00000539721 RAD54L2Q9Y4B4 1467 aa26.66■■□□□ 1.86
TRAF3-204ENST00000539721 RUSC2Q8N2Y8 1516 aa26.66■■□□□ 1.86
TRAF3-204ENST00000539721 EEA1Q15075 1411 aa26.65■■□□□ 1.86
TRAF3-204ENST00000539721 ABCA10Q8WWZ4 1543 aa26.6■■□□□ 1.85
TRAF3-204ENST00000539721 WDR97A6NE52 1622 aa26.6■■□□□ 1.85
TRAF3-204ENST00000539721 CUX2O14529 1486 aa26.59■■□□□ 1.85
TRAF3-204ENST00000539721 KIF27Q86VH2 1401 aa26.58■■□□□ 1.84
TRAF3-204ENST00000539721 TARBP1Q13395 1621 aaKnown RBP26.57■■□□□ 1.84
TRAF3-204ENST00000539721 IFT140Q96RY7 1462 aa26.53■■□□□ 1.84
TRAF3-204ENST00000539721 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
TRAF3-204ENST00000539721 ABCA5Q8WWZ7 1642 aa26.44■■□□□ 1.82
TRAF3-204ENST00000539721 TDRD9Q8NDG6 1382 aaKnown RBP26.42■■□□□ 1.82
TRAF3-204ENST00000539721 LOC105371045A0A1W2PR82 267 aa26.38■■□□□ 1.81
TRAF3-204ENST00000539721 GAPVD1Q14C86 1478 aa26.38■■□□□ 1.81
TRAF3-204ENST00000539721 ZNF608Q9ULD9 1512 aaPredicted RBP26.36■■□□□ 1.81
TRAF3-204ENST00000539721 KIF21BO75037 1637 aa26.35■■□□□ 1.81
TRAF3-204ENST00000539721 IGF1RP08069 1367 aa26.34■■□□□ 1.81
TRAF3-204ENST00000539721 EHMT2Q96KQ7 1210 aa26.34■■□□□ 1.81
TRAF3-204ENST00000539721 PBRM1Q86U86 1689 aa26.33■■□□□ 1.81
TRAF3-204ENST00000539721 AQRO60306 1485 aaKnown RBP eCLIP26.33■■□□□ 1.814e-6■■■■■ 31
TRAF3-204ENST00000539721 EIF4G3O43432 1585 aaKnown RBP26.32■■□□□ 1.8
TRAF3-204ENST00000539721 ERICH3Q5RHP9 1530 aa26.3■■□□□ 1.8
TRAF3-204ENST00000539721 PRXQ9BXM0 1461 aa26.28■■□□□ 1.8
TRAF3-204ENST00000539721 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
TRAF3-204ENST00000539721 CUL7Q14999 1698 aa26.27■■□□□ 1.8
TRAF3-204ENST00000539721 GRIN2BQ13224 1484 aa26.24■■□□□ 1.79
TRAF3-204ENST00000539721 RAPGEF2Q9Y4G8 1499 aa26.23■■□□□ 1.79
TRAF3-204ENST00000539721 CARMIL1Q5VZK9 1371 aa26.22■■□□□ 1.79
TRAF3-204ENST00000539721 UBTFP17480 764 aaKnown RBP26.14■■□□□ 1.78
TRAF3-204ENST00000539721 ADAMTS12P58397 1594 aa26.13■■□□□ 1.77
TRAF3-204ENST00000539721 SNAPC4Q5SXM2 1469 aa26.11■■□□□ 1.77
TRAF3-204ENST00000539721 FHAD1B1AJZ9 1412 aa26.09■■□□□ 1.77
TRAF3-204ENST00000539721 TNIKQ9UKE5 1360 aa26.08■■□□□ 1.77
TRAF3-204ENST00000539721 MAGI1Q96QZ7 1491 aaPredicted RBP26.07■■□□□ 1.76
TRAF3-204ENST00000539721 SYNJ2O15056 1496 aa25.97■■□□□ 1.75
TRAF3-204ENST00000539721 CTTNBP2Q8WZ74 1663 aa25.94■■□□□ 1.74
TRAF3-204ENST00000539721 CEP162Q5TB80 1403 aa25.93■■□□□ 1.74
TRAF3-204ENST00000539721 GRIN2AQ12879 1464 aa25.92■■□□□ 1.74
TRAF3-204ENST00000539721 CHMP7Q8WUX9 453 aaPredicted RBP25.9■■□□□ 1.74
TRAF3-204ENST00000539721 FBLN2P98095 1184 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms