RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 NISCHQ9Y2I1 1504 aa32.09■■■□□ 2.73
SCLT1-208ENST00000506368 CCDC180Q9P1Z9 1646 aa28.27■■■□□ 2.12
SCLT1-208ENST00000506368 ABCC9O60706 1549 aa27.47■■□□□ 1.99
SCLT1-208ENST00000506368 DCAF8L2P0C7V8 631 aa26.83■■□□□ 1.89
SCLT1-208ENST00000506368 ZCCHC6Q5VYS8 1495 aaKnown RBP26.81■■□□□ 1.88
SCLT1-208ENST00000506368 HRCP23327 699 aa26.7■■□□□ 1.86
SCLT1-208ENST00000506368 NACADO15069 1562 aa26.48■■□□□ 1.83
SCLT1-208ENST00000506368 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
SCLT1-208ENST00000506368 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
SCLT1-208ENST00000506368 MYO15BQ96JP2 1530 aa26.36■■□□□ 1.81
SCLT1-208ENST00000506368 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
SCLT1-208ENST00000506368 SUPT5HO00267 1087 aaKnown RBP26.12■■□□□ 1.77
SCLT1-208ENST00000506368 PELP1Q8IZL8 1130 aaKnown RBP26.05■■□□□ 1.76
SCLT1-208ENST00000506368 SCRIBQ14160 1630 aa26.01■■□□□ 1.75
SCLT1-208ENST00000506368 UNC13AQ9UPW8 1703 aa26.01■■□□□ 1.75
SCLT1-208ENST00000506368 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
SCLT1-208ENST00000506368 PCGF6Q9BYE7 350 aa25.91■■□□□ 1.74
SCLT1-208ENST00000506368 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
SCLT1-208ENST00000506368 BICRAQ9NZM4 1560 aa25.73■■□□□ 1.71
SCLT1-208ENST00000506368 PPARGC1BQ86YN6 1023 aaKnown RBP25.64■■□□□ 1.7
SCLT1-208ENST00000506368 ZEB1P37275 1124 aaPredicted RBP25.51■■□□□ 1.67
SCLT1-208ENST00000506368 TRIM26Q12899 539 aaPredicted RBP25.48■■□□□ 1.67
SCLT1-208ENST00000506368 MYT1Q01538 1121 aa25.21■■□□□ 1.63
SCLT1-208ENST00000506368 CECR2Q9BXF3 1484 aa25.06■■□□□ 1.6
SCLT1-208ENST00000506368 LOC105371045A0A1W2PR82 267 aa25.03■■□□□ 1.6
SCLT1-208ENST00000506368 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
SCLT1-208ENST00000506368 SCAF1Q9H7N4 1312 aaKnown RBP24.98■■□□□ 1.59
SCLT1-208ENST00000506368 DNAJC5BQ9UF47 199 aa24.93■■□□□ 1.58
SCLT1-208ENST00000506368 SMARCA4P51532 1647 aa24.83■■□□□ 1.57
SCLT1-208ENST00000506368 CC2D2AQ9P2K1 1620 aa24.82■■□□□ 1.56
SCLT1-208ENST00000506368 MROH2BQ7Z745 1585 aa24.82■■□□□ 1.56
SCLT1-208ENST00000506368 BAZ1AQ9NRL2 1556 aaPredicted RBP24.8■■□□□ 1.56
SCLT1-208ENST00000506368 RSF1Q96T23 1441 aaPredicted RBP24.64■■□□□ 1.54
SCLT1-208ENST00000506368 ACIN1Q9UKV3 1341 aaKnown RBP24.62■■□□□ 1.53
SCLT1-208ENST00000506368 WIZO95785 1651 aa24.6■■□□□ 1.53
SCLT1-208ENST00000506368 ATAD2BQ9ULI0 1458 aa24.59■■□□□ 1.53
SCLT1-208ENST00000506368 SMARCA2P51531 1590 aa24.51■■□□□ 1.51
SCLT1-208ENST00000506368 PEG3Q9GZU2 1588 aa24.5■■□□□ 1.51
SCLT1-208ENST00000506368 CENPBP07199 599 aaPredicted RBP24.49■■□□□ 1.51
SCLT1-208ENST00000506368 NCAPD3P42695 1498 aa24.45■■□□□ 1.51
SCLT1-208ENST00000506368 TRIM41Q8WV44 630 aa24.45■■□□□ 1.5
SCLT1-208ENST00000506368 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
SCLT1-208ENST00000506368 HMGXB3Q12766 1538 aa24.36■■□□□ 1.49
SCLT1-208ENST00000506368 NEUROD1Q13562 356 aa24.34■■□□□ 1.49
SCLT1-208ENST00000506368 TOP2AP11388 1531 aaKnown RBP24.24■■□□□ 1.47
SCLT1-208ENST00000506368 GTF3C3Q9Y5Q9 886 aa24.23■■□□□ 1.47
SCLT1-208ENST00000506368 DIEXFQ68CQ4 756 aaKnown RBP24.19■■□□□ 1.46
SCLT1-208ENST00000506368 CCER1Q8TC90 406 aaPredicted RBP24.15■■□□□ 1.46
SCLT1-208ENST00000506368 FAM9AQ8IZU1 332 aaPredicted RBP24.03■■□□□ 1.44
SCLT1-208ENST00000506368 CCDC88BA6NC98 1476 aa24.02■■□□□ 1.44
SCLT1-208ENST00000506368 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24■■□□□ 1.43
SCLT1-208ENST00000506368 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
SCLT1-208ENST00000506368 NESP48681 1621 aa23.93■■□□□ 1.42
SCLT1-208ENST00000506368 ZNF316A6NFI3 1004 aaPredicted RBP23.85■■□□□ 1.41
SCLT1-208ENST00000506368 CADPSQ9ULU8 1353 aa23.79■■□□□ 1.4
SCLT1-208ENST00000506368 CLSPNQ9HAW4 1339 aa23.79■■□□□ 1.4
SCLT1-208ENST00000506368 LAMC3Q9Y6N6 1575 aa23.75■■□□□ 1.39
SCLT1-208ENST00000506368 CFTRP13569 1480 aa23.74■■□□□ 1.39
SCLT1-208ENST00000506368 TTBK1Q5TCY1 1321 aaPredicted RBP23.69■■□□□ 1.38
SCLT1-208ENST00000506368 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
SCLT1-208ENST00000506368 TNIKQ9UKE5 1360 aa23.62■■□□□ 1.37
SCLT1-208ENST00000506368 EEA1Q15075 1411 aa23.6■■□□□ 1.37
SCLT1-208ENST00000506368 CEP162Q5TB80 1403 aa23.6■■□□□ 1.37
SCLT1-208ENST00000506368 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
SCLT1-208ENST00000506368 EHMT2Q96KQ7 1210 aa23.59■■□□□ 1.37
SCLT1-208ENST00000506368 ERCC6Q03468 1493 aa23.58■■□□□ 1.36
SCLT1-208ENST00000506368 PDS5BQ9NTI5 1447 aa23.56■■□□□ 1.36
SCLT1-208ENST00000506368 FANCD2Q9BXW9 1451 aa23.56■■□□□ 1.36
SCLT1-208ENST00000506368 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
SCLT1-208ENST00000506368 MIER1Q8N108 512 aa23.44■■□□□ 1.34
SCLT1-208ENST00000506368 YTHDC1Q96MU7 727 aaKnown RBP23.44■■□□□ 1.34
SCLT1-208ENST00000506368 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
SCLT1-208ENST00000506368 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
SCLT1-208ENST00000506368 GOLGA3Q08378 1498 aa23.34■■□□□ 1.33
SCLT1-208ENST00000506368 URB2Q14146 1524 aaKnown RBP23.33■■□□□ 1.33
SCLT1-208ENST00000506368 MRC2Q9UBG0 1479 aa23.33■■□□□ 1.33
SCLT1-208ENST00000506368 WDR62O43379 1518 aa23.25■■□□□ 1.31
SCLT1-208ENST00000506368 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
SCLT1-208ENST00000506368 CUX1P39880 1505 aa23.24■■□□□ 1.31
SCLT1-208ENST00000506368 TOPBP1Q92547 1522 aa23.23■■□□□ 1.31
SCLT1-208ENST00000506368 ANP32EQ9BTT0 268 aa23.2■■□□□ 1.3
SCLT1-208ENST00000506368 SUPT16HQ9Y5B9 1047 aaKnown RBP23.2■■□□□ 1.3
SCLT1-208ENST00000506368 SOGA1O94964 1423 aa23.2■■□□□ 1.3
SCLT1-208ENST00000506368 DNMBPQ6XZF7 1577 aa23.19■■□□□ 1.3
SCLT1-208ENST00000506368 SYNJ1O43426 1573 aa23.19■■□□□ 1.3
SCLT1-208ENST00000506368 KIF21BO75037 1637 aa23.17■■□□□ 1.3
SCLT1-208ENST00000506368 UBTFP17480 764 aaKnown RBP23.12■■□□□ 1.29
SCLT1-208ENST00000506368 TOP2BQ02880 1626 aa23.09■■□□□ 1.29
SCLT1-208ENST00000506368 VPS8Q8N3P4 1428 aa23.09■■□□□ 1.29
SCLT1-208ENST00000506368 FGD5Q6ZNL6 1462 aa23.08■■□□□ 1.29
SCLT1-208ENST00000506368 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
SCLT1-208ENST00000506368 CUX2O14529 1486 aa23.08■■□□□ 1.28
SCLT1-208ENST00000506368 POLA1P09884 1462 aaPredicted RBP23.07■■□□□ 1.28
SCLT1-208ENST00000506368 TSHZ2Q9NRE2 1034 aa23.04■■□□□ 1.28
SCLT1-208ENST00000506368 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
SCLT1-208ENST00000506368 HNRNPUL2Q1KMD3 747 aaKnown RBP23.01■■□□□ 1.27
SCLT1-208ENST00000506368 CLIP1P30622 1438 aa23■■□□□ 1.27
SCLT1-208ENST00000506368 RUSC2Q8N2Y8 1516 aa22.97■■□□□ 1.27
SCLT1-208ENST00000506368 APLP2Q06481 763 aa22.96■■□□□ 1.27
SCLT1-208ENST00000506368 TARBP1Q13395 1621 aaKnown RBP22.95■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 157.8 ms