RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 NISCHQ9Y2I1 1504 aa30.22■■■□□ 2.43
CKAP4-201ENST00000378026 SHROOM4Q9ULL8 1493 aa27.07■■□□□ 1.92
CKAP4-201ENST00000378026 SUPT5HO00267 1087 aaKnown RBP26.92■■□□□ 1.9
CKAP4-201ENST00000378026 HRCP23327 699 aa26.74■■□□□ 1.87
CKAP4-201ENST00000378026 PCGF6Q9BYE7 350 aa26.48■■□□□ 1.83
CKAP4-201ENST00000378026 PPARGC1BQ86YN6 1023 aaKnown RBP26.42■■□□□ 1.82
CKAP4-201ENST00000378026 MYO15BQ96JP2 1530 aa26.32■■□□□ 1.8
CKAP4-201ENST00000378026 CHIC1Q5VXU3 224 aa26.23■■□□□ 1.79
CKAP4-201ENST00000378026 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
CKAP4-201ENST00000378026 DCAF8L2P0C7V8 631 aa25.74■■□□□ 1.71
CKAP4-201ENST00000378026 ZCCHC6Q5VYS8 1495 aaKnown RBP25.64■■□□□ 1.69
CKAP4-201ENST00000378026 DCAF1Q9Y4B6 1507 aa25.53■■□□□ 1.68
CKAP4-201ENST00000378026 TRIM26Q12899 539 aaPredicted RBP25.49■■□□□ 1.67
CKAP4-201ENST00000378026 PELP1Q8IZL8 1130 aaKnown RBP25.37■■□□□ 1.65
CKAP4-201ENST00000378026 SCAF1Q9H7N4 1312 aaKnown RBP25.27■■□□□ 1.64
CKAP4-201ENST00000378026 CCDC180Q9P1Z9 1646 aa25.15■■□□□ 1.62
CKAP4-201ENST00000378026 ZEB1P37275 1124 aaPredicted RBP25.14■■□□□ 1.61
CKAP4-201ENST00000378026 EHMT2Q96KQ7 1210 aa25.02■■□□□ 1.6
CKAP4-201ENST00000378026 FAM9AQ8IZU1 332 aaPredicted RBP24.97■■□□□ 1.59
CKAP4-201ENST00000378026 TRIM41Q8WV44 630 aa24.8■■□□□ 1.56
CKAP4-201ENST00000378026 NEUROD1Q13562 356 aa24.68■■□□□ 1.54
CKAP4-201ENST00000378026 ACIN1Q9UKV3 1341 aaKnown RBP24.66■■□□□ 1.54
CKAP4-201ENST00000378026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.62■■□□□ 1.53
CKAP4-201ENST00000378026 GTF3C3Q9Y5Q9 886 aa24.55■■□□□ 1.52
CKAP4-201ENST00000378026 CCER1Q8TC90 406 aaPredicted RBP24.53■■□□□ 1.52
CKAP4-201ENST00000378026 DIEXFQ68CQ4 756 aaKnown RBP24.41■■□□□ 1.5
CKAP4-201ENST00000378026 CENPBP07199 599 aaPredicted RBP24.38■■□□□ 1.49
CKAP4-201ENST00000378026 TTBK1Q5TCY1 1321 aaPredicted RBP24.35■■□□□ 1.49
CKAP4-201ENST00000378026 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
CKAP4-201ENST00000378026 ABCC9O60706 1549 aa24.31■■□□□ 1.48
CKAP4-201ENST00000378026 MYT1Q01538 1121 aa24.25■■□□□ 1.47
CKAP4-201ENST00000378026 RB1CC1Q8TDY2 1594 aa24.24■■□□□ 1.47
CKAP4-201ENST00000378026 YTHDC1Q96MU7 727 aaKnown RBP24.19■■□□□ 1.46
CKAP4-201ENST00000378026 SCRIBQ14160 1630 aa24.1■■□□□ 1.45
CKAP4-201ENST00000378026 ZNF316A6NFI3 1004 aaPredicted RBP23.92■■□□□ 1.42
CKAP4-201ENST00000378026 MIER1Q8N108 512 aa23.82■■□□□ 1.4
CKAP4-201ENST00000378026 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
CKAP4-201ENST00000378026 MROH2BQ7Z745 1585 aa23.69■■□□□ 1.38
CKAP4-201ENST00000378026 HNRNPUL2Q1KMD3 747 aaKnown RBP23.65■■□□□ 1.38
CKAP4-201ENST00000378026 CEP162Q5TB80 1403 aa23.63■■□□□ 1.37
CKAP4-201ENST00000378026 UBTFP17480 764 aaKnown RBP23.62■■□□□ 1.37
CKAP4-201ENST00000378026 WIZO95785 1651 aa23.61■■□□□ 1.37
CKAP4-201ENST00000378026 WRNQ14191 1432 aaPredicted RBP eCLIP23.56■■□□□ 1.36
CKAP4-201ENST00000378026 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
CKAP4-201ENST00000378026 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
CKAP4-201ENST00000378026 SOGA1O94964 1423 aa23.47■■□□□ 1.35
CKAP4-201ENST00000378026 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
CKAP4-201ENST00000378026 CSRNP3Q8WYN3 585 aa23.39■■□□□ 1.34
CKAP4-201ENST00000378026 RUSC2Q8N2Y8 1516 aa23.34■■□□□ 1.33
CKAP4-201ENST00000378026 SUPT16HQ9Y5B9 1047 aaKnown RBP23.34■■□□□ 1.33
CKAP4-201ENST00000378026 EIF4G1Q04637 1599 aaKnown RBP23.31■■□□□ 1.32
CKAP4-201ENST00000378026 RANGAP1P46060 587 aaPredicted RBP23.31■■□□□ 1.32
CKAP4-201ENST00000378026 BAZ1AQ9NRL2 1556 aaPredicted RBP23.28■■□□□ 1.32
CKAP4-201ENST00000378026 APLP2Q06481 763 aa23.19■■□□□ 1.3
CKAP4-201ENST00000378026 TSHZ2Q9NRE2 1034 aa23.19■■□□□ 1.3
CKAP4-201ENST00000378026 GOLGA3Q08378 1498 aa23.14■■□□□ 1.29
CKAP4-201ENST00000378026 ANP32EQ9BTT0 268 aa23.11■■□□□ 1.29
CKAP4-201ENST00000378026 BCANQ96GW7 911 aa23.1■■□□□ 1.29
CKAP4-201ENST00000378026 EEA1Q15075 1411 aa23.07■■□□□ 1.28
CKAP4-201ENST00000378026 NACADO15069 1562 aa23.07■■□□□ 1.28
CKAP4-201ENST00000378026 CLIP1P30622 1438 aa23.04■■□□□ 1.28
CKAP4-201ENST00000378026 CLSPNQ9HAW4 1339 aa23.04■■□□□ 1.28
CKAP4-201ENST00000378026 TOP2AP11388 1531 aaKnown RBP23.03■■□□□ 1.28
CKAP4-201ENST00000378026 SMARCA2P51531 1590 aa23■■□□□ 1.27
CKAP4-201ENST00000378026 KCNH8Q96L42 1107 aa23■■□□□ 1.27
CKAP4-201ENST00000378026 BCL11AQ9H165 835 aa22.98■■□□□ 1.27
CKAP4-201ENST00000378026 VPS8Q8N3P4 1428 aa22.93■■□□□ 1.26
CKAP4-201ENST00000378026 DHX57Q6P158 1386 aaKnown RBP22.92■■□□□ 1.26
CKAP4-201ENST00000378026 CEP164Q9UPV0 1460 aa22.9■■□□□ 1.26
CKAP4-201ENST00000378026 FKBP8Q14318 412 aa22.86■■□□□ 1.25
CKAP4-201ENST00000378026 ITGAEP38570 1179 aa22.84■■□□□ 1.25
CKAP4-201ENST00000378026 SMARCA4P51532 1647 aa22.83■■□□□ 1.24
CKAP4-201ENST00000378026 RAPGEF2Q9Y4G8 1499 aa22.78■■□□□ 1.24
CKAP4-201ENST00000378026 KANK4Q5T7N3 995 aaPredicted RBP22.77■■□□□ 1.24
CKAP4-201ENST00000378026 KIF21BO75037 1637 aa22.71■■□□□ 1.23
CKAP4-201ENST00000378026 DDX10Q13206 875 aaKnown RBP22.7■■□□□ 1.22
CKAP4-201ENST00000378026 SYNJ1O43426 1573 aa22.69■■□□□ 1.22
CKAP4-201ENST00000378026 RBM19Q9Y4C8 960 aaKnown RBP22.68■■□□□ 1.22
CKAP4-201ENST00000378026 NEFLP07196 543 aa22.64■■□□□ 1.21
CKAP4-201ENST00000378026 TRIM52Q96A61 297 aa22.63■■□□□ 1.21
CKAP4-201ENST00000378026 PABPN1Q86U42 306 aaKnown RBP eCLIP22.61■■□□□ 1.21
CKAP4-201ENST00000378026 HIRIP3Q9BW71 556 aaPredicted RBP22.6■■□□□ 1.21
CKAP4-201ENST00000378026 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
CKAP4-201ENST00000378026 SIN3AQ96ST3 1273 aa22.51■■□□□ 1.19
CKAP4-201ENST00000378026 CCNB3Q8WWL7 1395 aa22.47■■□□□ 1.19
CKAP4-201ENST00000378026 ARAP1Q96P48 1450 aa22.47■■□□□ 1.19
CKAP4-201ENST00000378026 MSH5O43196 834 aa22.46■■□□□ 1.19
CKAP4-201ENST00000378026 RAB3GAP2Q9H2M9 1393 aa22.45■■□□□ 1.18
CKAP4-201ENST00000378026 RRBP1Q9P2E9 1410 aaKnown RBP22.43■■□□□ 1.18
CKAP4-201ENST00000378026 IRX6P78412 446 aaPredicted RBP22.4■■□□□ 1.18
CKAP4-201ENST00000378026 ANP32CO43423 234 aa22.38■■□□□ 1.17
CKAP4-201ENST00000378026 PPP1R15AO75807 674 aaPredicted RBP22.37■■□□□ 1.17
CKAP4-201ENST00000378026 ERICH6Q7L0X2 663 aa22.36■■□□□ 1.17
CKAP4-201ENST00000378026 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
CKAP4-201ENST00000378026 MAPKBP1O60336 1514 aa22.34■■□□□ 1.17
CKAP4-201ENST00000378026 FAM50AQ14320 339 aaKnown RBP22.33■■□□□ 1.16
CKAP4-201ENST00000378026 UNC13AQ9UPW8 1703 aa22.31■■□□□ 1.16
CKAP4-201ENST00000378026 CUX2O14529 1486 aa22.31■■□□□ 1.16
CKAP4-201ENST00000378026 PRXQ9BXM0 1461 aa22.26■■□□□ 1.15
CKAP4-201ENST00000378026 CCER2I3L3R5 266 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms