RNA–Protein interactions for RNA: ENST00000535094.6

MCF2L-232, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2L, Length 3,752 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-232ENST00000535094 NISCHQ9Y2I1 1504 aa29.83■■■□□ 2.37
MCF2L-232ENST00000535094 SHROOM4Q9ULL8 1493 aa27.44■■□□□ 1.98
MCF2L-232ENST00000535094 SUPT5HO00267 1087 aaKnown RBP27.35■■□□□ 1.97
MCF2L-232ENST00000535094 DCAF8L2P0C7V8 631 aa26.93■■□□□ 1.9
MCF2L-232ENST00000535094 PCGF6Q9BYE7 350 aa26.43■■□□□ 1.82
MCF2L-232ENST00000535094 HRCP23327 699 aa26.13■■□□□ 1.77
MCF2L-232ENST00000535094 PPARGC1BQ86YN6 1023 aaKnown RBP26.06■■□□□ 1.76
MCF2L-232ENST00000535094 CHIC1Q5VXU3 224 aa26■■□□□ 1.75
MCF2L-232ENST00000535094 EHMT2Q96KQ7 1210 aa25.82■■□□□ 1.72
MCF2L-232ENST00000535094 LOC105371045A0A1W2PR82 267 aa25.78■■□□□ 1.72
MCF2L-232ENST00000535094 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
MCF2L-232ENST00000535094 FAM9AQ8IZU1 332 aaPredicted RBP25.52■■□□□ 1.68
MCF2L-232ENST00000535094 TRIM26Q12899 539 aaPredicted RBP25.25■■□□□ 1.63
MCF2L-232ENST00000535094 ZCCHC6Q5VYS8 1495 aaKnown RBP25.13■■□□□ 1.61
MCF2L-232ENST00000535094 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
MCF2L-232ENST00000535094 TTBK1Q5TCY1 1321 aaPredicted RBP25.02■■□□□ 1.6
MCF2L-232ENST00000535094 ZEB1P37275 1124 aaPredicted RBP24.89■■□□□ 1.57
MCF2L-232ENST00000535094 DCAF1Q9Y4B6 1507 aa24.78■■□□□ 1.56
MCF2L-232ENST00000535094 CCER1Q8TC90 406 aaPredicted RBP24.71■■□□□ 1.55
MCF2L-232ENST00000535094 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.64■■□□□ 1.53
MCF2L-232ENST00000535094 PELP1Q8IZL8 1130 aaKnown RBP24.58■■□□□ 1.53
MCF2L-232ENST00000535094 SCAF1Q9H7N4 1312 aaKnown RBP24.54■■□□□ 1.52
MCF2L-232ENST00000535094 CCDC180Q9P1Z9 1646 aa24.4■■□□□ 1.5
MCF2L-232ENST00000535094 YTHDC1Q96MU7 727 aaKnown RBP24.38■■□□□ 1.49
MCF2L-232ENST00000535094 CENPBP07199 599 aaPredicted RBP24.3■■□□□ 1.48
MCF2L-232ENST00000535094 DIEXFQ68CQ4 756 aaKnown RBP24.23■■□□□ 1.47
MCF2L-232ENST00000535094 GTF3C3Q9Y5Q9 886 aa24.22■■□□□ 1.47
MCF2L-232ENST00000535094 NEUROD1Q13562 356 aa24.19■■□□□ 1.46
MCF2L-232ENST00000535094 RANGAP1P46060 587 aaPredicted RBP24.16■■□□□ 1.46
MCF2L-232ENST00000535094 ACIN1Q9UKV3 1341 aaKnown RBP24.15■■□□□ 1.46
MCF2L-232ENST00000535094 UBTFP17480 764 aaKnown RBP24.13■■□□□ 1.45
MCF2L-232ENST00000535094 RSF1Q96T23 1441 aaPredicted RBP24.09■■□□□ 1.45
MCF2L-232ENST00000535094 SCRIBQ14160 1630 aa24.07■■□□□ 1.44
MCF2L-232ENST00000535094 HNRNPUL2Q1KMD3 747 aaKnown RBP23.98■■□□□ 1.43
MCF2L-232ENST00000535094 RB1CC1Q8TDY2 1594 aa23.83■■□□□ 1.41
MCF2L-232ENST00000535094 APLP2Q06481 763 aa23.82■■□□□ 1.4
MCF2L-232ENST00000535094 ABCC9O60706 1549 aa23.81■■□□□ 1.4
MCF2L-232ENST00000535094 ZNF316A6NFI3 1004 aaPredicted RBP23.71■■□□□ 1.39
MCF2L-232ENST00000535094 CECR2Q9BXF3 1484 aa23.67■■□□□ 1.38
MCF2L-232ENST00000535094 MIER1Q8N108 512 aa23.57■■□□□ 1.36
MCF2L-232ENST00000535094 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
MCF2L-232ENST00000535094 MYT1Q01538 1121 aa23.45■■□□□ 1.34
MCF2L-232ENST00000535094 ITGAEP38570 1179 aa23.44■■□□□ 1.34
MCF2L-232ENST00000535094 MROH2BQ7Z745 1585 aa23.43■■□□□ 1.34
MCF2L-232ENST00000535094 CEP162Q5TB80 1403 aa23.41■■□□□ 1.34
MCF2L-232ENST00000535094 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.341e-6■■■□□ 15.2
MCF2L-232ENST00000535094 SOGA1O94964 1423 aa23.31■■□□□ 1.32
MCF2L-232ENST00000535094 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
MCF2L-232ENST00000535094 WIZO95785 1651 aa23.27■■□□□ 1.32
MCF2L-232ENST00000535094 CCDC88BA6NC98 1476 aa23.26■■□□□ 1.31
MCF2L-232ENST00000535094 BCANQ96GW7 911 aa23.21■■□□□ 1.31
MCF2L-232ENST00000535094 ATP1B4Q9UN42 357 aaPredicted RBP23.14■■□□□ 1.29
MCF2L-232ENST00000535094 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
MCF2L-232ENST00000535094 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
MCF2L-232ENST00000535094 CLIP1P30622 1438 aa22.99■■□□□ 1.27
MCF2L-232ENST00000535094 GOLGA3Q08378 1498 aa22.94■■□□□ 1.26
MCF2L-232ENST00000535094 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
MCF2L-232ENST00000535094 NACADO15069 1562 aa22.9■■□□□ 1.26
MCF2L-232ENST00000535094 BAZ1AQ9NRL2 1556 aaPredicted RBP22.88■■□□□ 1.25
MCF2L-232ENST00000535094 SUPT16HQ9Y5B9 1047 aaKnown RBP22.88■■□□□ 1.25
MCF2L-232ENST00000535094 NEFLP07196 543 aa22.88■■□□□ 1.25
MCF2L-232ENST00000535094 HIRIP3Q9BW71 556 aaPredicted RBP22.83■■□□□ 1.25
MCF2L-232ENST00000535094 EEA1Q15075 1411 aa22.8■■□□□ 1.24
MCF2L-232ENST00000535094 DDX10Q13206 875 aaKnown RBP22.8■■□□□ 1.24
MCF2L-232ENST00000535094 FAM50AQ14320 339 aaKnown RBP22.8■■□□□ 1.24
MCF2L-232ENST00000535094 FKBP8Q14318 412 aa22.79■■□□□ 1.24
MCF2L-232ENST00000535094 KCNH8Q96L42 1107 aa22.76■■□□□ 1.23
MCF2L-232ENST00000535094 KANK4Q5T7N3 995 aaPredicted RBP22.74■■□□□ 1.23
MCF2L-232ENST00000535094 TRIM52Q96A61 297 aa22.71■■□□□ 1.23
MCF2L-232ENST00000535094 CEP164Q9UPV0 1460 aa22.7■■□□□ 1.22
MCF2L-232ENST00000535094 P3H3Q8IVL6 736 aa22.69■■□□□ 1.22
MCF2L-232ENST00000535094 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
MCF2L-232ENST00000535094 VPS8Q8N3P4 1428 aa22.66■■□□□ 1.22
MCF2L-232ENST00000535094 TSHZ2Q9NRE2 1034 aa22.62■■□□□ 1.21
MCF2L-232ENST00000535094 ERICH6Q7L0X2 663 aa22.61■■□□□ 1.21
MCF2L-232ENST00000535094 CNGB1Q14028 1251 aaPredicted RBP22.6■■□□□ 1.21
MCF2L-232ENST00000535094 RAPGEF2Q9Y4G8 1499 aa22.59■■□□□ 1.21
MCF2L-232ENST00000535094 SMARCA2P51531 1590 aa22.59■■□□□ 1.21
MCF2L-232ENST00000535094 SIN3AQ96ST3 1273 aa22.58■■□□□ 1.2
MCF2L-232ENST00000535094 DHX57Q6P158 1386 aaKnown RBP22.54■■□□□ 1.2
MCF2L-232ENST00000535094 CLSPNQ9HAW4 1339 aa22.52■■□□□ 1.2
MCF2L-232ENST00000535094 ANP32CO43423 234 aa22.51■■□□□ 1.19
MCF2L-232ENST00000535094 ANP32EQ9BTT0 268 aa22.51■■□□□ 1.19
MCF2L-232ENST00000535094 SMARCA4P51532 1647 aa22.5■■□□□ 1.19
MCF2L-232ENST00000535094 IRX6P78412 446 aaPredicted RBP22.5■■□□□ 1.19
MCF2L-232ENST00000535094 CCNB3Q8WWL7 1395 aa22.36■■□□□ 1.17
MCF2L-232ENST00000535094 EIF4G1Q04637 1599 aaKnown RBP22.35■■□□□ 1.17
MCF2L-232ENST00000535094 HNRNPUQ00839 825 aaKnown RBP eCLIP22.34■■□□□ 1.17
MCF2L-232ENST00000535094 POLR3GLQ9BT43 218 aa22.32■■□□□ 1.16
MCF2L-232ENST00000535094 BAZ1BQ9UIG0 1483 aaKnown RBP22.31■■□□□ 1.16
MCF2L-232ENST00000535094 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
MCF2L-232ENST00000535094 RAB3GAP2Q9H2M9 1393 aa22.3■■□□□ 1.16
MCF2L-232ENST00000535094 KIF21BO75037 1637 aa22.29■■□□□ 1.16
MCF2L-232ENST00000535094 RBM19Q9Y4C8 960 aaKnown RBP22.27■■□□□ 1.16
MCF2L-232ENST00000535094 CDK11AQ9UQ88 783 aaPredicted RBP22.23■■□□□ 1.15
MCF2L-232ENST00000535094 BCL11AQ9H165 835 aa22.22■■□□□ 1.15
MCF2L-232ENST00000535094 TONSLQ96HA7 1378 aa22.2■■□□□ 1.15
MCF2L-232ENST00000535094 SENP3-EIF4A1A0A087X0R7 540 aa22.18■■□□□ 1.14
MCF2L-232ENST00000535094 ARID3CA6NKF2 412 aa22.18■■□□□ 1.14
MCF2L-232ENST00000535094 FAM9BQ8IZU0 186 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms